lman2la (lman2l)


Basic Information

Item Value
gene id lman2la
gene name lman2l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20138956 ~ 20143762 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590898.2
TTGTTGAATGGGAGGAGTCGTAATCTGAAATGGCCGCCGCCACAAACAACAACTGACAGATATTGAATATTCTCTCCGATATTTTTATTCGTCAGACCATGACTCTAAAAACATATTGGACGTTTGTGATTATTCTTATTACAACTTGTCGATCTTTTGCCGACGATGATAATCATGAAATGGAGGAGTTTCTGAAAAGGGAGCATTCATTGTCAAAACCCTATCAAGGTGTCGGGTCGTCCAGCTCCTCCCATTGGGAATTGATGGGCGATGCCATGGTAACCACAGAGCAGGTGCGCCTCACAACAGACATGCAGAGCAAGCAGGGGGCAGTGTGGAGCCGCATTCCCTGTCACCTAAGGGACTGGGAGTTACAAGTGCACTTTAAGATTCATGGCCAAGGCAAGAAGAATCTGAATGGGGATGGACTGGCAATTTGGTACACCAAGGAGCGCATGCAGAAAGGTCCTGTGTTTgggaatcaggaccttttcacaGGGCTGGGTGTATTTGTGGACACGTACCCCAATgaggaaaaacaccttgagGCACAGAAGACGAGGTACACCACACGCACACAGAGGATCTTCCCCTTTGTGTTGGCCATGGTGGGGAACGGAAGCATTAGTTACGACCACGAACGAGACGGGCGTCCCACTGAGCTGGGCGGCTGCAACGCCATGGTGCGCAACCTCAACCACGACACCTTCATCTTCATCAGATATGTCCGTCGCAGGCTCACGATTATGATTGACATTGATGGGCAGCATGAATGGAGGGACTGCCTGGACATACCGGGGGTACGGCTGCCCCAGGGCTACTACTTTGGAGCCTCGGCCGTCACTGGAGATCTCTCTGACAATCATGATGTGGTCTCCCTGAAACTGTACCAGCTGACTGTGTTACGCAGTGAGacagaggaaaaggaggaggaagatgagatcACTCTACCCAGTGTAGATAACATGGACCTACTAAAGAtgGGTGAGAATGAAGAAGGGTGGAGTAGTATTGCTATGTTCTTCACCATCCTCTTCTCCATGCTGGGCTGTTTCCTGCTCATCGTGGTCGGCCTCATCGTCTACAGCCACTGGAACGAGAACAGACGCAAACGCTTCTactgagacggagagagggggaaaagagcgGGAGGGAGGCCTCCCATCATAACCACTACTGTAGTCTGCCGACAACTGCACTGAGATATTGAAATGACTGGCAAGATGGAGACAATGTAACTGACCTCCCAATGTAGACCAATATGCTTGATGGACAGAGGTACCATTGGGACAACACTAATGAATCCTGGGAAAGACTGAGCAGCGGTGGATGCATTTCAACTACAGTAGCCAACCACACTGACCCCTGCCATGAGTAGACATACAGAAAGTTTGTCTGTCCCCACCCCTACTCTCACCAACCAGGCCTTACTCTACACAAATATAgagcatattattattattattattatgtacttACTGTGTGAAAATGACCTCCGTGTTGTCAGACAGTGCCATTGCTGGTTAATAGTTTGGTTGTCTTTTTAAGGGTCTGGGGAGATGGATTTATACTCAGTTTTAGCGTTTTGAATGTCAGAGACAAAGTAACCGATGTGTTCTGACTCCACATGACCAGGTCCCATCAGCGCTTGATCCGTGTCACACCAAAGATGTTTTCAATGGCCTATCTGGCAATTGATCCGTCACTTTTCTGCTTCGCTCTAGAAACAGCATCATGTCATATTTGCCTCTATGGTGCTTGCAATCAATGTAAGTCTTTGTGCGTTTCAATTGATTCAGACGGTTTCAATGAATTCTCATACTCAATTTTATTAGTTTGAAAAATGTATGGTTGCAGAGAATATGCTTTTGTTGTCAAACTGAATCTACAGTAGAATGCATGAAGGTGCTAGACTAGTCATTATTTCACCACTATTTATGTTAAGTGATTAGGTCGTTTTTCTTTTATTCTGTATATGAAATGAAAAGGTGACCAATCCCTC
>XM_021590899.2
TTGTTGAATGGGAGGAGTCGTAATCTGAAATGGCCGCCGCCACAAACAACAACTGACAGATATTGAATATTCTCTCCGATATTTTTATTCGTCAGACCATGACTCTAAAAACATATTGGACGTTTGTGATTATTCTTATTACAACTTGTCGATCTTTTGCCGACGATGATAATCATGAAATGGAGGAGTTTCTGAAAAGGGAGCATTCATTGTCAAAACCCTATCAAGGTGTCGGGTCGTCCAGCTCCTCCCATTGGGAATTGATGGGCGATGCCATGGTAACCACAGAGCAGGTGCGCCTCACAACAGACATGCAGAGCAAGCAGGGGGCAGTGTGGAGCCGCATTCCCTGTCACCTAAGGGACTGGGAGTTACAAGTGCACTTTAAGATTCATGGCCAAGGCAAGAAGAATCTGAATGGGGATGGACTGGCAATTTGGTACACCAAGGAGCGCATGCAGAAAGGTCCTGTGTTTgggaatcaggaccttttcacaGGGCTGGGTGTATTTGTGGACACGTACCCCAATgaggaaaaacaccttgagGCACAGAAGACGAGGTACACCACACGCACACAGAGGATCTTCCCCTTTGTGTTGGCCATGGTGGGGAACGGAAGCATTAGTTACGACCACGAACGAGACGGGCGTCCCACTGAGCTGGGCGGCTGCAACGCCATGGTGCGCAACCTCAACCACGACACCTTCATCTTCATCAGATATGTCCGTCGCAGGCTCACGATTATGATTGACATTGATGGGCAGCATGAATGGAGGGACTGCCTGGACATACCGGGGGTACGGCTGCCCCAGGGCTACTACTTTGGAGCCTCGGCCGTCACTGGAGATCTCTCTGACAATCATGATGTGGTCTCCCTGAAACTGTACCAGCTGACTGTGTTACGCAGTGAGacagaggaaaaggaggaggaagatgagatcACTCTACCCAGTGTAGATAACATGGACCTACTAAAGACCACTGGAACGAGAACAGACGCAAACGCTTCTactgagacggagagagggggaaaagagcgGGAGGGAGGCCTCCCATCATAACCACTACTGTAGTCTGCCGACAACTGCACTGAGATATTGAAATGACTGGCAAGATGGAGACAATGTAACTGACCTCCCAATGTAGACCAATATGCTTGATGGACAGAGGTACCATTGGGACAACACTAATGAATCCTGGGAAAGACTGAGCAGCGGTGGATGCATTTCAACTACAGTAGCCAACCACACTGACCCCTGCCATGAGTAGACATACAGAAAGTTTGTCTGTCCCCACCCCTACTCTCACCAACCAGGCCTTACTCTACACAAATATAgagcatattattattattattattatgtacttACTGTGTGAAAATGACCTCCGTGTTGTCAGACAGTGCCATTGCTGGTTAATAGTTTGGTTGTCTTTTTAAGGGTCTGGGGAGATGGATTTATACTCAGTTTTAGCGTTTTGAATGTCAGAGACAAAGTAACCGATGTGTTCTGACTCCACATGACCAGGTCCCATCAGCGCTTGATCCGTGTCACACCAAAGATGTTTTCAATGGCCTATCTGGCAATTGATCCGTCACTTTTCTGCTTCGCTCTAGAAACAGCATCATGTCATATTTGCCTCTATGGTGCTTGCAATCAATGTAAGTCTTTGTGCGTTTCAATTGATTCAGACGGTTTCAATGAATTCTCATACTCAATTTTATTAGTTTGAAAAATGTATGGTTGCAGAGAATATGCTTTTGTTGTCAAACTGAATCTACAGTAGAATGCATGAAGGTGCTAGACTAGTCATTATTTCACCACTATTTATGTTAAGTGATTAGGTCGTTTTTCTTTTATTCTGTATATGAAATGAAAAGGTGACCAATCCCTC

Function

symbol description
lman2l Predicted to enable mannose binding activity. Involved in protein transport. Located in Golgi apparatus and endoplasmic reticulum membrane. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
VIP36-like protein isoform X2

GO: NA

KEGG:

id description
K10083 LMAN2L, VIPL; lectin, mannose-binding 2-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590898.2 False 2002 mRNA 0.46 9 20138956 20143762
XM_021590899.2 True 1896 mRNA 0.46 9 20138956 20143762
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509788 LOC106563294 coding downstream 45261 20088225 ~ 20093695 (-)
LOC110509787 LOC106563295 coding downstream 75173 20050795 ~ 20063783 (-)
LOC110509785 LOC106563298 coding downstream 113048 20023128 ~ 20025908 (-)
LOC110509780 LOC106563302 coding downstream 188332 19946567 ~ 19950624 (-)
traf2 LOC106563303 coding downstream 233083 19882762 ~ 19905873 (-)
LOC110509794 ddx54 coding upstream 617899 20761661 ~ 20772043 (-)
LOC110509795 LOC106563284 coding upstream 667974 20811736 ~ 20869832 (-)
LOC110509797 exos2 coding upstream 727710 20871472 ~ 20878088 (-)
LOC110509798 LOC106563283 coding upstream 736652 20880412 ~ 20885181 (-)
LOC110509799 fubp3 coding upstream 748048 20891810 ~ 20921213 (-)
G2162182 NA non-coding downstream 1222 20136815 ~ 20137734 (-)
G2162186 NA non-coding downstream 12495 20126207 ~ 20126461 (-)
G2162160 NA non-coding downstream 21937 20116294 ~ 20117019 (-)
G2162150 NA non-coding downstream 30670 20108034 ~ 20108286 (-)
G2162137 NA non-coding downstream 38597 20100143 ~ 20100359 (-)
G2162197 NA non-coding upstream 8851 20152613 ~ 20152830 (-)
G2162316 NA non-coding upstream 46484 20190246 ~ 20190722 (-)
G2162366 NA non-coding upstream 106681 20250443 ~ 20250664 (-)
G2162372 NA non-coding upstream 113551 20257313 ~ 20257520 (-)
G2162374 NA non-coding upstream 118338 20262100 ~ 20262391 (-)
G2162127 NA other downstream 55338 20083145 ~ 20083618 (-)
G2162005 NA other downstream 154177 19984545 ~ 19984779 (-)
LOC110509757 LOC106563370 other downstream 861950 19275539 ~ 19277044 (-)
G2158111 akna other downstream 3492359 16643681 ~ 16646597 (-)
G2162405 LOC106563289 other upstream 165427 20309189 ~ 20309802 (-)
G2162422 LOC106563345 other upstream 185986 20329748 ~ 20330138 (-)
surf4 LOC106563281 other upstream 826570 20970332 ~ 20978032 (-)
rabepk rabepk other upstream 1001387 21138218 ~ 21146494 (-)
G2163913 NA other upstream 1452789 21596551 ~ 21597495 (-)

Expression

lman2la(lman2l) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 10.
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lman2la(lman2l) Expression in each Bioproject

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lman2la(lman2l) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network