LOC110509792 (LOC106563286)


Basic Information

Item Value
gene id LOC110509792
gene name LOC106563286
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20692911 ~ 20712554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590904.2
GACTATACTTGAGGGTGACCATTCCTGTTCAGGCACTGGATAGGCAGAGAGGACAACCCAAACTAGCTCGTCACAGACTCAGCGCTTCCGCTTCGTAAAGCGTACTACTGTGGATCGTTGGtgtgtgaagggagggagagagagagaggagggaggaaagaagCTTGGTGACGGACTTGCTCCTCTGGAACACTGCTACTATATTGCTATGTGCTATCACCAGGGAAGGCTTCCCGAACATATCGACTATAAGATGTACAATAAAGTAACACCGCGCGCGTTATTTTAGCCATCTTTGCAAGACTCTTGAATGGTCTTGGTCGCTAGGGCGCAGTCAATCTGAAGATAGAGACAATCCATGGAGATACTGGATAGCCTTTTCTGGCTACACATTGGGATATACATTGAATTGGGTGGAAACTCTTAGCAAACATTTTTTGAAGTAACTACGTCGGCTGTTCCATAGCTTCACAAGATTGAAAGTGACGTTTCTGGTTACAAGTTGAGGCCTTGGTCTCCGGAGCTCCAGACATGGCGGACCAGGATGAAACCGTTGGGCTCCAAAATTCGACAAGCGGTTCAGAGTCAAAGGAATTGCACTCCGAGAGTAAAGCAGATAAACCAAATGGAACTTCGGGCAAATCTCCATCCTCCCAGACGACATATATTCAACAGGGAATGGAGGGGATAAAAGTGTACCTGCACGAGAGGGAACTGTGGGAGAAGTTTCACGAGGTGGGGACGGAGATGATTATCACCAAAGCGGGAAGAAGAATGTTTCCCAGCTTCAAAGTGAAGGTCACTGGATTGAACCCTAAAACAAAATACATACTCCTGATGGATGTCGTGCCTGCGGACGACCATCGCTACAAGTTCGCCGATAATAAATGGTCTGTGACCGGGAAGGCCGAACCTGCCATGCCCGGGAGGCTCTACGTTCACCCGGACTCTCCTGCAACTGGGGCGCATTGGATGAGGCAGCTAGTCTCTTTCCAGAAGCTGAAACTGACGAACAACCACCTGGATCCTTTTGGACATATTATCCTGAACTCCATGCATAAATACCAACCCAGGATTCACATCGTGAAAGCGGATGAAAATAACGGCTTTGGCTCCAAGAACACGGCGTTTTGTACCCACGTCTTCCCAGAGACTGCCTTCATTGCGGTTACGTCCTACCAGAACCATAAGATAACCCAGTTGAAGATAGAGAACAACCCATTTGCCAAAGGCTTCCGCGGGAGTGATGACATGGAGCTCCATCGGATGTCCAGAATGCAAAGCACTAAGGAGTACCCGGTGGTCCCTCGCAGTACGGTGCGCCAGAGGGTGGGCACCAGCCAGAGCCCATTCAGTGGGGAGGTGCAGGGTATTGCCAACCCCAGTGGCCTGGCCTCCCAGTACACCCAGTGTGAGAACGGGGCCACCAGCACCTCACAGGATCTCCTGCCCCAGTCTGGCTCCTACCCTCTCCCACACGAGCACAGCCAGGACTACCACTGCATCAAGAGAAAAGTGGAGGATGACTGTCACTCAGGAGAGCACACCTACAAGAAGGCTTACCTGGAGAGTTCCTCCAGCGAGGACGACCATTACTACCGTCCCGTCAGCTACCCACAGAGCCTGGGCCTGCCCGGGGGGCCCTACAGGACCGAGTCCAGCCAGAGGCAGGCCTGTATGTACGCTAGCGCCTCCCAGGGGGCCGAGCCCGTCCCCAGCCTGGAGGACATCAGCTGCAACACCTGGGCCGGCGTCTCACCCTACAGCAGCTGCTCCGTCACCACCATGCAGCCAATGGAGCGGCTGCCCTACCAGCACTTCTCTGCCCACTTCACCTCGGGGCCCCTGGTGTCCAGACTGAGTGGGTTGGCAGGCCACGCCTCTCCGCAGCTGGGTGACGCCCACCACGCCATGTACCAGGGCCCCATGGCCCATCAGACTCTGGGCCGCCAGTGCAGCCCCGGGGCAGGCATCCAGTCACCCACTGCAGGTCTCCAAGGCAGCGAGTACCTGTACTCACACGGGATCCCGCGCACGCTGTCGCCTCATCAGTACCACGCGGTGCACAGCGCCAGCATCATGCCAGAGTGGAATGAGAGCAGCTAAAAGGGATTTCTTCATAGGAACGATGAAGAAGTTATAGAAAAAAAGGACAGTGAGAAGGTGGGACTTTAGATAcatctatatttatattttttaagcTATATACAGTATGGCAGTGCAGTCTCGTGAGATTAGTGGGTGATCCATGAATGCCTCAAGCATTGGACATTGGACATTGGACTCAGAGGAAGTGGGAATGTCTTTGCAGTTACTGCGCCTATGGGCAAACATCATGAGGATGATCAAAACAAGGTGGAGACAAGCATTAACCATCGAGTTTTTAGGAGTCTTATTAGGACAACTAAATACGAGTTTAAAAGCCAATGCTTTTAAACGAGGGACAGAAGTGACTTTATCAAGAGACTCCCATTTTTAAAATGTCCTGTTTTGACAGTGTATTATACATCTTGGTGCGTGAAGGATATGTTTTCTTCTTTTTTCTGCTTCAAGTTGAAATCTTGTTGACCTTTACCCTGTCGACCTTTACCCTGTCGACCTTTACATGCTTTAGATTTTGtgcaaaaaaaaagttttcaTTCTGTTTGGGGCTTTTGTAGTGAAACACTTACTTTCTAAAAAGCATTCTACAGAAATTCAGAAGATGTGATTCTTATTCTGTGGCTATTTTGAAAACATACTCGGTGAGTTGCTGGCCAGATTCGTCAATCAAAATGACAAAGGGCAGAAAACATTCGATACTTACATGAAAGACATTGTATTGCTCGGCATTAAACTTGAATACATGACCACCATATCCATGGATACGGGTCGACATAACGGTGAGGTCATAGGCAGTTGACAGGTCAATAAGCTGACAGTGTGTTCTGTAGAGGAAGTGTGTATTGATATCCTCTCTAACTCTGGCATGTACAACATACACTTTGACCTGGAAATATTTGGATGTGGTTTACCGTTTGTCTGGGGAAGGTGTGTGGAAAAATGTACCTGCAACGAAAGCTAAGACACAAGAAACCTTCTGACATAGTGGTTCTCATTCAGACACTGCCCTTATAAGAGATATAAGCTAGAACCGGTGAAAAGTTGATTGCATATTTTTATTTGGGTAATTGAAAACACAATTTTTTTTAGTCTATGTTGTACCCAGTAAATGTGTGTTGTTTCTCAATCTTTTCATTTATGCTCCTACAATTGGCACTTCTCCCACGACTACAGTCATGAACTCAACTAGAGCAAACAAAGATATGTCTGGTGTGTGACGCCTTTAACAATGTAGAATGCAAAGAACCAGAGGCAAAGATTGATATAGACAAATAATGATAATATGAAATCATGGTCACTTCAGAGATTATACAAGACATCAGTCAAAATACACGTCATTTCTGCCAACATATGGAAGTCATGTTATATGTTAAAGGTCAGTTTTTATGTATGGACAAAGACTTTTAAAATGCTTGTAGTTGATAGAACGTTACTTGTCGatagtatttatttttttcctgtATTGTAAATCAACTTGTTCCTGTTGTATCGACAACGAAATGTGTTAGTCGGTCCCGTTCTTTTTGTTACTTTGTCATTtaggctaaatgtattttatttttttaatcctcCTGCTTTAGACATCAGGACATTCATTTACAGTTGTCAAAAGTCTAAGAAAGACAGAGATTGATTACTGTGGTGTAAATAAACACAGGTGTATATAGAATACGGAATACTTGCAATACATTTAAAAGAGGATTCTG

Function

NR:

description
T-box transcription factor TBX5-A-like

GO: NA

KEGG:

id description
K10179 TBX5, HOS; T-box protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590904.2 True 3809 mRNA 0.47 9 20692911 20712554

Neighbor

gene id symbol gene type direction distance location
LOC110509791 LOC106563287 coding upstream 46877 20636564 ~ 20646034 (+)
LOC110509342 LOC106563289 coding upstream 369875 20216712 ~ 20323036 (+)
LOC110509341 LOC106566934 coding upstream 511622 20173189 ~ 20181289 (+)
wbp1 LOC106563291 coding upstream 561530 20120015 ~ 20131381 (+)
LOC110509784 LOC106563296 coding upstream 650473 20025913 ~ 20042438 (+)
rab14l LOC106563285 coding downstream 81328 20793882 ~ 20811225 (+)
cyh9orf16 cssa11h9orf16 coding downstream 270909 20983463 ~ 20985277 (+)
dnm1a dnm1 coding downstream 291695 21004249 ~ 21096175 (+)
LOC100135840 grp78 coding downstream 420855 21133409 ~ 21137594 (+)
LOC110509811 LOC106563272 coding downstream 447572 21160126 ~ 21389662 (+)
G2162853 NA non-coding upstream 13773 20678492 ~ 20679138 (+)
G2162721 NA non-coding upstream 101697 20590967 ~ 20591214 (+)
G2162714 NA non-coding upstream 108487 20584220 ~ 20584424 (+)
G2162702 NA non-coding upstream 118041 20574636 ~ 20574870 (+)
G2162701 NA non-coding upstream 118289 20574263 ~ 20574622 (+)
G2162978 NA non-coding downstream 167860 20880414 ~ 20880989 (+)
G2162904 NA non-coding downstream 259708 20972262 ~ 20973279 (+)
G2163071 NA non-coding downstream 360043 21072597 ~ 21077941 (+)
G2163023 NA non-coding downstream 414916 21127470 ~ 21132783 (+)
G2163083 rabepk non-coding downstream 430330 21142884 ~ 21146376 (+)
G2161678 NA other upstream 895137 19795260 ~ 19797774 (+)
G2161635 LOC106563312 other upstream 940168 19741814 ~ 19752743 (+)
LOC110509766 LOC106566689 other upstream 1076400 19609602 ~ 19616511 (+)
LOC110509753 LOC106563373 other upstream 1555343 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 1624127 19066137 ~ 19068784 (+)
G2163804 LOC106613263 other downstream 887864 21600418 ~ 21601052 (+)
G2165628 LOC106563266 other downstream 2124517 22837071 ~ 22841481 (+)
G2165973 LOC106563265 other downstream 2413226 23125780 ~ 23134290 (+)
LOC110509345 LOC106563260 other downstream 2803068 23468400 ~ 23534217 (+)

Expression


Co-expression Network