LOC110509798 (LOC106563283)


Basic Information

Item Value
gene id LOC110509798
gene name LOC106563283
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20880412 ~ 20885181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590911.2
ATTAGAGAGGGGTCAGACCAGCAACTTATAAAGAGGACCCTCGCTGCAGGAGGACGGCACATTTCCACCCAGCCGTCAAACGGGAAGGAATATCCACTTTGCATTTAAAGACACTCATATCTGAACACGGCTTGCAATAGTTTGCGATATGGGCTCGGTATTACCTGCAGAGGCTTTAGCCCTGAAGTCTGGATTTAAATGCCAGAGTCGGTCCTTGTCTGATATTATCACCTCAGACATTCTGCACAGTTTCCTGTATGGACGGTGGAGAAATGTGATCGGGGAGCACCTGATGGAGGAGAGGCAGAGCAGCATCGGTCCCAAGACAGCCTTCACTGCCGAGGTCCTCGCACAGTCGTTCGTTGGAGAGGTCCAGAAGCTGTCCAGCCTGGTGCTGCCCAGTGAGGTGATCATTGCCCAGAGCTCTATACCTGGCGAGGGCCTGGGCATCTTCTCCAAGACCTGGATCAAGGCAGGCACAGAGATGGGTCCATTTACTGGCACCGTCATCTCCCCTGAACACGTGGACCTGCTAAAGAACAACAACCTCATGTGGGAGGTGTTCAACGATGATGGCACGGTACGCTACTTCATTGATGCCAGTCAGGAGGACCATCGCAGCTGGATGACCTACATCAAGTGTGCGCGCAACGAGCAGGAGCAGAACCTGGAGGTGGTGCAGATTGGCAGCAGCATCTTCTACAGGGCCGTGGAGACTATCCCTCCAGACCAGGAGCTGCTAGTGTGGTACGGAAACTCCCACAACACCTTCCTTGGTATTCCTGGCGTTCCCGGTACAGAAGAAGAGCATCAGAAAAAGAGCCGCAATGAGGACTCCCACTCATGTGACGGCTCTTCATCTTGCTccccctcgtcctcctcctcttcctcgtctgCGACTAGCCGCATGCGTTGCGTCATCTGCCACCGGGGCTTCAACTCGCGTAGTAACCTGCGCTCCCACATGCGCATCCACACCCTGGACAAGCCCTTCGTCTGTCGCTTCTGCAACCGCCGCTTCAGCCAGTCGTCCACCTTGCGCAACCACGTGCGCCTGCACACCGGAGAGCGCCCCTACAAGTGCCATGTGTGCCAGAGCGCCTACTCCCAACTGGCAGGGCTGCGGGCACACCAGAAGAGTGCCAGGCACAGACCAGGGGCGGGGGGCGCAGACACTGCCTCCCAAATctcacctccacccccaccaATCACCAGCCTGTCCCAACACCAGGTCCCCCTGGTTCACCATATCCCCACCATGGTGCTATGATAGCAGAGAAGAAAGAGAAACGTGCTAATGCAAACAACTCTGCACTTTACCTCTGCACACTTGAGCCACAGGTTGcgctctccctccttctcagAGAGGCTACTGTTTGCTGGTGTGGCAGGCATCGCTATGACTTTGCAATGAACCAGAGTATGTCCGGGTGTACTATGTCTGGTGGGTTGAGCTGATAGTACAGACGTTCTCAAATACATTTCTACTGGTTGCCTTATTTACAATCCAGTCTGCTTAGACTTATTGGGTATTATGTTTGTAATGGTCACAAAAAAATCAGAGTGTGTCAAAAACACTTTGTTGTTCCAAAGGAAACTGTTGTACTATTGCCTGTACAGAGAATCTGAACAAAGGACTGAATGTTGGTTCCAAGAGTAGGCTAACTGTCCATTATTCATCTGTTTGTATAGTCAATACAGTATTGCCAGGATGCAGCATGTCAAAGGAAATACTTTGCTATTCTAGTTAATAATTCTATTGGTCAAGACGAGTACTCTGTATTTCAGATAAGGATGTTTTACCATAACAGATTTTAGTTTTTGGGTGGTTCCTTCATGCTGTCATTAAATACAATTATCCTCACTTTACGTCCTGTCATCGTAGGCCTTCCAACTCAGGAGGAAGGTTGTTTGAAAAAGTCAAGTAAAAAAGTTGAATTCCAATTAAATGTACAGTATGAAGAAGTAGGTGTACATTTTTCAACATTTTACACTGTAATAAATTGTCCCTGTATCTCTGTATATTAATGTAAAGTGTTGTGTAATGATGAACTGTATGTGAATGTAAAGACGTGTGCTTTCCTTATATTCTAAATAAAGAATGAAATTAA
>TU2473101
TGGTCACAAAAAAATCAGAGTGTGTCAAAAACACTTTGTTGTTCCAAAGGAAACTGTTGTACTATTGCCTGTACAGAGAATCTGAACAAAGGACTGAATGTTGGTTCCAAGAGTAGGCTAACTGTCCATTATTCATCTGTTTGTATAGTCAATACAGTATTGCCAGGATGCAGCATGTCAAAGGAAATACTTTGCTATTCTAGTTAATAATTCTATTGGTCAAGACGAGTACTCTGTATTTCAGATAAGGATGTTTTACCATAACAGATTTTAGTTTTTGGGTGGTTCCTTCATGCTGTCATTAAATACAATTATCCTCACTTTACGTCCTGTCATCGTAGGCCTTCCAACTCAGGAGGAAGGTTGTTTGAAAAAGTCAAGTAAAAAAGTTGAATTCCAATTAAATGTACAGTATGAAGAAGTAGGTGTACATTTTTCAACATTTTACACTGTAATAAATTGTCCCTGTATCTCTGTATATTAATGTAAAGTGTTGTGTAATGATGAACTGTATGTGAATGTAAAGACGTGTGCTTTCCTTATATTCTAAATAAAGAATGAAATTAATA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590911.2 False 2111 mRNA 0.49 5 20880414 20885181
TU2473101 True 569 lncRNA 0.34 1 20880412 20880980

Neighbor

gene id symbol gene type direction distance location
LOC110509797 exos2 coding downstream 2326 20871472 ~ 20878088 (-)
LOC110509795 LOC106563284 coding downstream 10582 20811736 ~ 20869832 (-)
LOC110509794 ddx54 coding downstream 108371 20761661 ~ 20772043 (-)
lman2la lman2l coding downstream 736652 20138956 ~ 20143762 (-)
LOC110509788 LOC106563294 coding downstream 786719 20088225 ~ 20093695 (-)
LOC110509799 fubp3 coding upstream 6629 20891810 ~ 20921213 (-)
ass1 ass1 coding upstream 53257 20938438 ~ 20968130 (-)
surf4 LOC106563281 coding upstream 85151 20970332 ~ 20978032 (-)
LOC118945306 LOC106567027 coding upstream 93738 20978919 ~ 20980033 (-)
LOC110509803 surf2 coding upstream 96098 20981279 ~ 20983028 (-)
G2163313 LOC106563285 non-coding downstream 69214 20793913 ~ 20811200 (-)
G2162816 NA non-coding downstream 225549 20654650 ~ 20654865 (-)
G2162693 NA non-coding downstream 313592 20566610 ~ 20566822 (-)
G2162686 NA non-coding downstream 319002 20561181 ~ 20561412 (-)
G2162589 NA non-coding downstream 392856 20487286 ~ 20487558 (-)
G2163353 NA non-coding upstream 4557 20889738 ~ 20890839 (-)
G2163390 NA non-coding upstream 49485 20934666 ~ 20935014 (-)
G2163395 NA non-coding upstream 56089 20941270 ~ 20942268 (-)
G2163400 NA non-coding upstream 72255 20957436 ~ 20957977 (-)
G2163375 NA non-coding upstream 148543 21033724 ~ 21037984 (-)
G2162422 LOC106563345 other downstream 550276 20329748 ~ 20330138 (-)
G2162405 LOC106563289 other downstream 570612 20309189 ~ 20309802 (-)
G2162127 NA other downstream 796796 20083145 ~ 20083618 (-)
G2162005 NA other downstream 895635 19984545 ~ 19984779 (-)
rabepk rabepk other upstream 259968 21138218 ~ 21146494 (-)
G2163913 NA other upstream 711370 21596551 ~ 21597495 (-)
G2163923 NA other upstream 727382 21612563 ~ 21612961 (-)
LOC110509827 LOC106563259 other upstream 2655961 23540883 ~ 23552798 (-)

Expression


Co-expression Network