surf4 (LOC106563281)


Basic Information

Item Value
gene id surf4
gene name LOC106563281
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 20970332 ~ 20978032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590916.2
CTGGATCAGTGTACGTGGCACACAGCAGTCGGTAGAGCAGCTCCGGGGGCTATCGTAGCAACGTGAAGCATTGTGGGGCAGAGGCGGCCTTCTCTTCATTGAGACCGGCAAGACTTGCTGAAttctTGCGGATGACGAAGCAGTACCTGCCTCACCTGGCTCGGCTGTGTCTAATCAGCACCTTCCTGGAGGACGGCATCCGTATGTGGTTCCAGTGGAACGAGCAAAAGGACTACATCGAGGCGACGTGGGGCTGTGGCTACTTCCTGGCCACCTGCTTTGTGCTGCTCAACCTCACAGGACAGCTTGGTGGCTGTGTCCTTATCCTCAGTAGAAATTTTGTACAGTATGCCTGCTTTGGATTATTTGGAGTCATAGCTCTACAGACGGTTGCATACAGTATTTTATGGGATATAAAATTTCTGATGAGGAACCTTGCTCTTGGCGGTGGACTCCTGCTGTTACTAGCGGAGTCGCGTTCAGAAGGGAAGAGCATGTTCGCTGGCGTCCCCTCCATGGGGGAGAGCTCACCGAAGCAGTACATGCAGCTGGGAGGGAGAGTCCTGTTGGTGCTCATGTTCATGACCCTGCTGCACTTTGACCCCAGCTTCTTCTCGATCCTCCAGAACATGGTGGGCACGGCTCTCATCATCCTGGTGGCCATTGGCTTCAAGACCAAGCTGGCCGCCCTGACCCTGGTAATATGGCTGCTGGCCATCAACGTCTACTTCAACGCCTTTTGGACGGTGCCCGCCTACAAGCCTATGCATGACTTCCTCAAGTACGATTTCTTCCAGACCACGTCCGTCATCGGAGGGCTGCTGTTGGTCGTAGCACTGGGGCCCGGCGGGGTGTCCATGGACGAGAAGAAGAAGgagtggtagggagagggagatgcaCAAACACCACTGACCCCAGGACACACAAGGACCCCCAGGGTACTCGTCATTTTTCTGACCATCCacagcaacctctccctccaCCGTTCTGTCTCCTcctttttttttcacattttgttttcCAGCTGCTGTTTGTTTTTATGAGGTCAATATGGTCGGTACTGGATTATTTTATACACCTATTTATGTCCCCTTTATTTTGGTGGCAAGGAAAAAGTCAGATTTTGAATAAACTGTCAAGTGCAAAGTAACTAATTCATGAGTGATGGGtggatgaaaaaaaaatattggttcTGTGTTGGAGAGGTATGAATATCACAATGTATTTATGGATGTTATCATAACCTTTCAGAAAGAAACAGTTTTTTGTGAATAGCTGAAAAACAGTGGTGAGTACGTGTATCAGTTTGCTGGCCAAGGAAGGCGCCTGCTTGTTGGACCATCTGTGACTTGCTCATATCAATACTGAGACCTCTGGCACTGAATACAATACGATTCTCCCTCACTCTGTAGGTTGCCATCTTCCCTGCTTTTCAGAAGTCCCAGGTCTCATCGTTACACACATCCAGTCCCATGGCTGTGACTCATGGATTGCATATGGAGATGAGTTGTGGGGGATGTGTGCATTGTATACTACTATTCAAAATGATGGATTGAAGTTGTGCTTgattgaatattgaaacaattgtTAGCACCAGAACTCTTTTTTGGGGCTCTTTGTTCTTTACATCTAGGGCAAATGCCTAACTAGTAACTGTATTTTAACAGGGCAGTAGTGGGAGTTTGACATTTGTGAAACGCCATATTCCTCAATCTAAAGAAGCAAGCAGAACTGAAGAGTCAACAATCACCCTGACTTTTTCCTTTGTTCAGTGTTTTTGCTTTatactgtataaggaaataaacaTCTTGAGTTTATTGATTTTCA
>XM_021590915.2
CGCAAACATGGCATGACGACAAACCCCCTGGATCAGTGTACGTGGCACACAGCAGTCGGTAGAGCAGCTCCGGGGGCTATCGTAGCAACGTGAAGCATTGTGGGGCAGAGGCGGCCTTCTCTTCATTGAGACCGGCAAGACTTGCTGAAGTAAATATCGGAGGCAGAAGATTTCTGTATTAGCTAATTAATAGTTTATTGACTAAAAGCACTAAGCCTCAGTTTCTTTAGACATGGGGCAGGAGGAGCTTATGAGTCGAGCCGAAGATGTGGCGGACCAGttctTGCGGATGACGAAGCAGTACCTGCCTCACCTGGCTCGGCTGTGTCTAATCAGCACCTTCCTGGAGGACGGCATCCGTATGTGGTTCCAGTGGAACGAGCAAAAGGACTACATCGAGGCGACGTGGGGCTGTGGCTACTTCCTGGCCACCTGCTTTGTGCTGCTCAACCTCACAGGACAGCTTGGTGGCTGTGTCCTTATCCTCAGTAGAAATTTTGTACAGTATGCCTGCTTTGGATTATTTGGAGTCATAGCTCTACAGACGGTTGCATACAGTATTTTATGGGATATAAAATTTCTGATGAGGAACCTTGCTCTTGGCGGTGGACTCCTGCTGTTACTAGCGGAGTCGCGTTCAGAAGGGAAGAGCATGTTCGCTGGCGTCCCCTCCATGGGGGAGAGCTCACCGAAGCAGTACATGCAGCTGGGAGGGAGAGTCCTGTTGGTGCTCATGTTCATGACCCTGCTGCACTTTGACCCCAGCTTCTTCTCGATCCTCCAGAACATGGTGGGCACGGCTCTCATCATCCTGGTGGCCATTGGCTTCAAGACCAAGCTGGCCGCCCTGACCCTGGTAATATGGCTGCTGGCCATCAACGTCTACTTCAACGCCTTTTGGACGGTGCCCGCCTACAAGCCTATGCATGACTTCCTCAAGTACGATTTCTTCCAGACCACGTCCGTCATCGGAGGGCTGCTGTTGGTCGTAGCACTGGGGCCCGGCGGGGTGTCCATGGACGAGAAGAAGAAGgagtggtagggagagggagatgcaCAAACACCACTGACCCCAGGACACACAAGGACCCCCAGGGTACTCGTCATTTTTCTGACCATCCacagcaacctctccctccaCCGTTCTGTCTCCTcctttttttttcacattttgttttcCAGCTGCTGTTTGTTTTTATGAGGTCAATATGGTCGGTACTGGATTATTTTATACACCTATTTATGTCCCCTTTATTTTGGTGGCAAGGAAAAAGTCAGATTTTGAATAAACTGTCAAGTGCAAAGTAACTAATTCATGAGTGATGGGtggatgaaaaaaaaatattggttcTGTGTTGGAGAGGTATGAATATCACAATGTATTTATGGATGTTATCATAACCTTTCAGAAAGAAACAGTTTTTTGTGAATAGCTGAAAAACAGTGGTGAGTACGTGTATCAGTTTGCTGGCCAAGGAAGGCGCCTGCTTGTTGGACCATCTGTGACTTGCTCATATCAATACTGAGACCTCTGGCACTGAATACAATACGATTCTCCCTCACTCTGTAGGTTGCCATCTTCCCTGCTTTTCAGAAGTCCCAGGTCTCATCGTTACACACATCCAGTCCCATGGCTGTGACTCATGGATTGCATATGGAGATGAGTTGTGGGGGATGTGTGCATTGTATACTACTATTCAAAATGATGGATTGAAGTTGTGCTTgattgaatattgaaacaattgtTAGCACCAGAACTCTTTTTTGGGGCTCTTTGTTCTTTACATCTAGGGCAAATGCCTAACTAGTAACTGTATTTTAACAGGGCAGTAGTGGGAGTTTGACATTTGTGAAACGCCATATTCCTCAATCTAAAGAAGCAAGCAGAACTGAAGAGTCAACAATCACCCTGACTTTTTCCTTTGTTCAGTGTTTTTGCTTTatactgtataaggaaataaacaTCTTGAGTTTATTGATTTTCA
>XM_021590914.2
GTGAGCTGAAGATCATTGGCCAGTTCACGCTTCAGCTGTCCTCCCACCTAGGCTGAACTGTCTGGAAGGGTCATGGCTTCTTCTGTAGCCATCCGAAGACAGGTCTGGATTGCCAAGACCAACTACACAGACTCTCTGAAAGACACCTTCCATTTGTGGTCAGTCACACCTATGGGGTCAGCTCAGCTTCAGGCCCTAGCTCGACTGGAATGGTGTGCAAACAGGAACCGTCGTAATGGCTACTTGTTGCAGttctTGCGGATGACGAAGCAGTACCTGCCTCACCTGGCTCGGCTGTGTCTAATCAGCACCTTCCTGGAGGACGGCATCCGTATGTGGTTCCAGTGGAACGAGCAAAAGGACTACATCGAGGCGACGTGGGGCTGTGGCTACTTCCTGGCCACCTGCTTTGTGCTGCTCAACCTCACAGGACAGCTTGGTGGCTGTGTCCTTATCCTCAGTAGAAATTTTGTACAGTATGCCTGCTTTGGATTATTTGGAGTCATAGCTCTACAGACGGTTGCATACAGTATTTTATGGGATATAAAATTTCTGATGAGGAACCTTGCTCTTGGCGGTGGACTCCTGCTGTTACTAGCGGAGTCGCGTTCAGAAGGGAAGAGCATGTTCGCTGGCGTCCCCTCCATGGGGGAGAGCTCACCGAAGCAGTACATGCAGCTGGGAGGGAGAGTCCTGTTGGTGCTCATGTTCATGACCCTGCTGCACTTTGACCCCAGCTTCTTCTCGATCCTCCAGAACATGGTGGGCACGGCTCTCATCATCCTGGTGGCCATTGGCTTCAAGACCAAGCTGGCCGCCCTGACCCTGGTAATATGGCTGCTGGCCATCAACGTCTACTTCAACGCCTTTTGGACGGTGCCCGCCTACAAGCCTATGCATGACTTCCTCAAGTACGATTTCTTCCAGACCACGTCCGTCATCGGAGGGCTGCTGTTGGTCGTAGCACTGGGGCCCGGCGGGGTGTCCATGGACGAGAAGAAGAAGgagtggtagggagagggagatgcaCAAACACCACTGACCCCAGGACACACAAGGACCCCCAGGGTACTCGTCATTTTTCTGACCATCCacagcaacctctccctccaCCGTTCTGTCTCCTcctttttttttcacattttgttttcCAGCTGCTGTTTGTTTTTATGAGGTCAATATGGTCGGTACTGGATTATTTTATACACCTATTTATGTCCCCTTTATTTTGGTGGCAAGGAAAAAGTCAGATTTTGAATAAACTGTCAAGTGCAAAGTAACTAATTCATGAGTGATGGGtggatgaaaaaaaaatattggttcTGTGTTGGAGAGGTATGAATATCACAATGTATTTATGGATGTTATCATAACCTTTCAGAAAGAAACAGTTTTTTGTGAATAGCTGAAAAACAGTGGTGAGTACGTGTATCAGTTTGCTGGCCAAGGAAGGCGCCTGCTTGTTGGACCATCTGTGACTTGCTCATATCAATACTGAGACCTCTGGCACTGAATACAATACGATTCTCCCTCACTCTGTAGGTTGCCATCTTCCCTGCTTTTCAGAAGTCCCAGGTCTCATCGTTACACACATCCAGTCCCATGGCTGTGACTCATGGATTGCATATGGAGATGAGTTGTGGGGGATGTGTGCATTGTATACTACTATTCAAAATGATGGATTGAAGTTGTGCTTgattgaatattgaaacaattgtTAGCACCAGAACTCTTTTTTGGGGCTCTTTGTTCTTTACATCTAGGGCAAATGCCTAACTAGTAACTGTATTTTAACAGGGCAGTAGTGGGAGTTTGACATTTGTGAAACGCCATATTCCTCAATCTAAAGAAGCAAGCAGAACTGAAGAGTCAACAATCACCCTGACTTTTTCCTTTGTTCAGTGTTTTTGCTTTatactgtataaggaaataaacaTCTTGAGTTTATTGATTTTCA
>TU2473122
GTGAAGCATTGTGGGGCAGAGGCGGCCTTCTCTTCATTGAGACCGGCAAGACTTGCTGAAGTAAATATCGGAGGCAGAAGATTTCTGTATTAGCTAATTAATAGTTTATTGACTAAAAGCACTAAGCCTCAGTTTCTTTAGACATGGGGCAGGAGGAGCTTATGAGTCGAGCCGAAGATGTGGCGGACCAGttctTGCGGATGACGAAGCAGTACCTGCCTCACCTGGCTCGGCTGTGTCTAATCAGCACCTTCCTGGAGGACGGCATCCGTATGTGGTTCCAGTGGAACGAGCAAAAGGACTACATCGAGGCGACGTGGGGCTGTGGCTACTTCCTGGCCACCTGCTTTGTGCTGCTCAACCTCACAGGACAGCTTGGTGGCTGTGTCCTTATCCTCAGTAGAAATTTTGTACAGTATGCCTGCTTTGGATTATTTGGAGTCATAGCTCTACAGACGGTTGCATACAGTATTTTATGGGATATAAAATTTCTGATGAGGTAGGTCTCTTCCAATAAGTTGCTGAATAATATTTTTACATATTAAATTGAAAATATGCAATTGACTTTAGTCTCTTGTACATGACCAATTATATTAGTTGTTTAAGTGTCTTTaaaccactgtctgtctgtcccactaATTTTATACCCCCCATACATTGAACCAGTGTTGTAGTTGAGTCACTAAACCTTGAGGTTGAGTCACAAGTCCCCTATGCACGAGTCAGTCGAGGACAGTGGAAGGGTATGACGAGGCAACACGTTCAAAGATGGGCTACTTTTCTATTATCAAggccagagagagaaaaaaagttttACTATCAAggccagagagagacaaacagttTTACTATTCAACTCAATACTAGTGTTTTCAATTTTGTAAAGCAGTTTGTGTTTCTTAACCAGGCAAAGCtaaatagtagactggtgacTGGTGGTTACGGGGAAGCAAGAGAGTCACTTGCATGATGTGTAGCCAATGATCGGAGCGGAGTCTGCCTTCCCACAATCATCGCTTGCGCTCCCGcagctcaccagctgatgtaggCTGCGTGTGCCGGTGTGGCGAGTCCTTCCCACTGCAAGAGAACAGAACCCTCGCTGCTGAGCACATCCAGTGCTGCTAATATTCTGCTTATCATAGTAGCCTATCCAGTCCAAGTGCAAATACAAGTCACAAGAAGGCGAGTCACAAGTCATGAAAATCtggactcgagtcagactcgagtACTGCAGCACTGCGTTGAACTAAGTATTGGTCTTATTTCCCCTCTCCTACACAATGTCTCCCTCCCCCCCATTCCTCTATCAGGAACCTTGCTCTTGGCGGTGGACTCCTGCTGTTACTAGCGGAGTCGCGTTCAGAAGGGAAGAGCATGTTCGCTGGCGTCCCCTCCATGGGGGAGAGCTCACCGAAGCAGTACATGCAGCTGGGAGGGAGAGTCCTGTTGGTGCTCATGTTCATGACCCTGCTGCACTTTGACCCCAGCTTCTTCTCGATCCTCCAGAACATGGTGGGCACGGCTCTCATCATCCTGGTGGCCATTGGCTTCAAGACCAAGCTGGCCGCCCTGACCCTGGTAATATGGCTGCTGGCCATCAACGTCTACTTCAACGCCTTTTGGACGGTGCCCGCCTACAAGCCTATGCATGACTTCCTCAAGTACGATTTCTTCCAGACCACGTCCGTCATCGGAGGGCTGCTGTTGGTCGTAGCACTGGGGCCCGGCGGGGTGTCCATGGACGAGAAGAAGAAGgagtggtagggagagggagatgcaCAAACACCACTGACCCCAGGACACACAAGGACCCCCAGGGTACTCGTCATTTTTCTGACCATCCacagcaacctctccctccaCCGTTCTGTCTCCTcctttttttttcacattttgttttcCAGCTGCTGTTTGTTTTTATGAGGTCAATATGGTCGGTACTGGATTATTTTATACACCTATTTATGTCCCCTTTATTTTGGTGGCAAGGAAAAAGTCAGATTTTGAATAAACTGTCAAGTGCAAAGTAACTAATTCATGAGTGATGGGtggatgaaaaaaaaatattggttcTGTGTTGGAGAGGTATGAATATCACAATGTATTTATGGATGTTATCATAACCTTTCAGAAAGAAACAGTTTTTTGTGAATAGCTGAAAAACAGTGGTGAGTACGTGTATCAGTTTGCTGGCCAAGGAAGGCGCCTGCTTGTTGGACCATCTGTGACTTGCTCATATCAATACTGAGACCTCTGGCACTGAATACAATACGATTCTCCCTCACTCTGTAGGTTGCCATCTTCCCTGCTTTTCAGAAGTCCCAGGTCTCATCGTTACACACATCCAGTCCCATGGCTGTGACTCATGGATTGCATATGGAGATGAGTTGTGGGGGATGTGTGCATTGTATACTACTATTCAAAATGATGGATTGAAGTTGTGCTTgattgaatattgaaacaattgtTAGCACCAGAACTCTTTTTTGGGGCTCTTTGTTCTTTACATCTAGGGCAAATGCCTAACTAGTAACTGTATTTTAACAGGGCAGTAGTGGGAGTTTGACATTTGTGAAACGCCATATTCCTCAATCTAAAGAAGCAAGCAGAACTGAAGAGTCAACAATCACCCTGACTTTTTCCTTTGTTCAGTGTTTTTGCTTTatactgtataaggaaataaacaTCTTGAGTTTATTGATTTTCA

Function

NR:

description
surfeit locus protein 4 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590916.2 False 1827 mRNA 0.47 6 20970332 20977010
XM_021590915.2 False 1985 mRNA 0.47 6 20970332 20977037
XM_021590914.2 False 1957 mRNA 0.47 6 20970332 20978032
TU2473122 True 2710 TUCP 0.46 5 20970332 20976948

Neighbor

gene id symbol gene type direction distance location
ass1 ass1 coding downstream 2202 20938438 ~ 20968130 (-)
LOC110509799 fubp3 coding downstream 49119 20891810 ~ 20921213 (-)
LOC110509798 LOC106563283 coding downstream 85151 20880412 ~ 20885181 (-)
LOC110509797 exos2 coding downstream 92244 20871472 ~ 20878088 (-)
LOC110509795 LOC106563284 coding downstream 100500 20811736 ~ 20869832 (-)
LOC118945306 LOC106567027 coding upstream 887 20978919 ~ 20980033 (-)
LOC110509803 surf2 coding upstream 3247 20981279 ~ 20983028 (-)
ciz1a ciz1 coding upstream 7094 20985126 ~ 20998097 (-)
golga2 golga2 coding upstream 118253 21096285 ~ 21122009 (-)
LOC110509343 NA coding upstream 146127 21124159 ~ 21132785 (-)
G2163400 NA non-coding downstream 12355 20957436 ~ 20957977 (-)
G2163395 NA non-coding downstream 28064 20941270 ~ 20942268 (-)
G2163390 NA non-coding downstream 35318 20934666 ~ 20935014 (-)
G2163353 NA non-coding downstream 79493 20889738 ~ 20890839 (-)
G2163375 NA non-coding upstream 55692 21033724 ~ 21037984 (-)
G2163441 NA non-coding upstream 136497 21114529 ~ 21144466 (-)
G2163452 NA non-coding upstream 175745 21153777 ~ 21154014 (-)
G2163455 NA non-coding upstream 182083 21160115 ~ 21160344 (-)
G2162422 LOC106563345 other downstream 640194 20329748 ~ 20330138 (-)
G2162405 LOC106563289 other downstream 660530 20309189 ~ 20309802 (-)
LOC110509788 LOC106563294 other downstream 876672 20088225 ~ 20093695 (-)
G2162127 NA other downstream 886714 20083145 ~ 20083618 (-)
G2162005 NA other downstream 985553 19984545 ~ 19984779 (-)
rabepk rabepk other upstream 167117 21138218 ~ 21146494 (-)
G2163913 NA other upstream 618519 21596551 ~ 21597495 (-)
G2163923 NA other upstream 634531 21612563 ~ 21612961 (-)
LOC110509827 LOC106563259 other upstream 2563110 23540883 ~ 23552798 (-)
LOC110509849 enp2 other upstream 3305518 24231769 ~ 24286433 (-)

Expression


Co-expression Network