XLOC_004035


Basic Information

Item Value
gene id XLOC_004035
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14308897 ~ 14311237 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008777
AGTGGGTGGGACCGGGATGGTTTGTTTACagggttgctatggtaacggTGAACCGCAAGAGTGTCATTACTAGAGCGCCTTGATTTTGAACAACAACGCAGCCGTCTCATCTTTTAGGTGGGTAAATCCTATCACAAAATCGATGAAATGTTAAGATAACATGTTACTCAAGTGTGTTTACAAGTTTAGTGAGGTAACGTGCAGTTAAAGAGTTAATTAGTAGCGAAGATTGTATCTGTTTGCTGGCATTGTATCAAAACGGCAGTTAGCGGCCGGTTGTGTTATATGATAACTGCAAAGTTAACTAAAGGGCTCCACCACGCTGGAATCCTCtgtaaatgttatgtttttatattcaagTTGTTAAAACGATATTAATATCACTTTCGATTGTATAAATACACTTTTGGTTTAAGACGATGGTTACAAGTTACAGAGTTGTTTACGTTTGGATTACACAGAGCTGTCCCAGAGATGCTGACTAGCCTAGCAACTGCTAGAAGGGCTCTGACCAGATAAAAAGATCATGCTGATCTGCAAAGCATTTAAAGGTAGAGTATGTAATGTTTCTATATTATAACCCTCTGTAACAGGAGTTAAAAGGAAATCTGAAGGAAAATTACTAGTCATGTACAGTAAGAACAGTAGAAACAGTTAAGTAAGTAACATTTATTTGTCCACAAATTTTTAAAGACTGAAACACTTTTCATAATCCTGGAGTCTTTTTACAACCCCAGGGGCTTTGTAacaactacaaataataatataagtttttaactttatttataatgttgGTCAATTTGTCTAATTTTAAAGCCTGCCAAGCACATCTTTTtcataatcataatatttttgGTCTGAGTATTAACAATTTAGAAACAGAAACAACCCTTAAAAGAAAATCTATCCTCAGATTCAATAGATGTGATATACGTTATGTATTAACTACTAGTATAATTGTAAGTGTACTACTTGAAAATTACACAATGACATTTTTCATCTGTACGGCAAGTGGTTATAAATACTTGTAAATATTTAGTTTCTGTACTCTATTCTATGCTCAGAACTTGACTATTGCACTTAACCATTACAACTGCACACACAGTAATAGatacacgcgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacacacacactgctgtataCTGAATATACTCCATACTTTCTTAATTATAGTTTAAAATGAATATACTAATAGTATACTtgagaatacatttttttttgtaagagtacatggacccttttcacaaaaaAGGTTATGATGTGTTGATGGTGATAAACATCTTAAATCTTTAGTTCTTtttcattttagatttttaaaaaaatatgtacactTCTAAAGCTATACTTTGTATTATGTCATCTGTGcgtcaaactacaaaaaaaaataaaataaaaaatattgcttgtgtcaggtgtttctaatgcagtgcctatgggcaggacagtaaatttgacgttgttcTCTCCTCTGGTtgccattatcagtctcacactattattattattttatttatttttttatttattgttttttttctgaaagtattGATAACACCATCATTTGGTTTTTCTTTGGTTATTGGagcaaaataaaatgcaaacattttgttGTATTCTGCCATTAGtatgatgacttctgctactTAACAACCCAgaattgtgaaaagggtccatcgAACCTAAATAACACATTGATTTTAACATTTGAAtttcaattgttttatttctCAGACACTGTCACAAAAATCAGCAAAGGAACAGCTTGCCAAGTAGAAGCAACAATAAAATCATGGTTAAGAAAGTCAAGAGACAGAGATGGTGGGCGCCAAGGAATGGCCAAAACTCAGAAAGGACTTACTTTTAATGAAATTTTTTGGAGTTAAAAATGGCTTTTTCTTTTCTGTGTTTAttcatgtttgattttgtattaaatataattctGTTTCAATATCAtacagttgttaatttttttgttattaaactctgtaaataaataattactaacATGACCCAGTTTAGTGTCAAGTAAAACTGTTCtgaaaatgcattgtataatggTTTTCTGTATGTACAAAGTAGAACCAGACTCAGTGGCTCAGACAGGATCATTGCGAGCAGCCCACTGTGGGCCCAATGGTG
>TCONS_00007696
CAATTATTTTCTTGGGGAAAGTGTGACACCCTGAATGTCACACGATTATATGTATGTTTTTCttataagtatatataataaaatcttcTTCTCTTTGTTAATTTTCTTCATGATTCATCTAAAGCTGTATTTATATGAAATATCATGAGTGGAGAGTGGGTGGGACCGGGATGGTTTGTTTACagggttgctatggtaacggTGAACCGCAAGAGTGTCATTACTAGAGCGCCTTGATTTTGAACAACAACGCAGCCGTCTCATCTTTTAGAGCTGTCCCAGAGATGCTGACTAGCCTAGCAACTGCTAGAAGGGCTCTGACCAGATAAAAAGATCATGCTGATCTGCAAAGCATTTAAAGACACTGTCACAAAAATCAGCAAAGGAACAGCTTGCCAAGTAGAAGCAACAATAAAATCATGGTTAAGAAAGTCAAGAGACAGAGATGGTGGGCGCCAAGGAATGGCCAAAACTCAGAAAGGACTTACTTTTAATGAAATTTTTTGGAGTTAAAAATGGCTTTTTCTTTTCTGTGTTTAttcatgtttgattttgtattaaatataattctGTTTCAATATCAtacagttgttaatttttttgttattaaactctgtaaataaataattactaacATGACCCAGTTTAGTGTCAAGTAAAACTGTTCtgaaaatgcattgtataatggTTTTCTGTATGTACAAAGTAGAACCAGACTCAGTGGCTCAGACAGGATCATTGCGAGCAGCCCACTGTGGGCCCAATGGTG

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0033334 fin morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008777 False 2187 lncRNA 0.33 1 14308897 14311083
TCONS_00007696 True 769 lncRNA 0.37 3 14308897 14311237

Neighbor

gene id symbol gene type direction distance location
XLOC_004034 NA coding downstream 160471 14147663 ~ 14148426 (-)
XLOC_004033 tmem259 coding downstream 206739 14071689 ~ 14102158 (-)
XLOC_004032 CR555295.1 coding downstream 508095 13798453 ~ 13800802 (-)
XLOC_004031 sid1 coding downstream 690485 13616015 ~ 13618412 (-)
XLOC_004030 si:ch211-1a19.2 coding downstream 697765 13605623 ~ 13611132 (-)
XLOC_004036 NA coding upstream 119685 14430922 ~ 14432200 (-)
XLOC_004037 adora1a coding upstream 355829 14667066 ~ 14669026 (-)
XLOC_004038 CR550307.1 coding upstream 382244 14693481 ~ 14695864 (-)
XLOC_004039 NA coding upstream 443668 14754905 ~ 14759088 (-)
XLOC_004040 sgta coding upstream 460671 14771908 ~ 14813063 (-)
XLOC_004019 CR450764.8 misc downstream 1617206 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 1687130 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 1717601 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 1795635 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 1808635 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 1816145 16127382 ~ 16127678 (-)
XLOC_004029 BX530062.1 non-coding downstream 826110 13482671 ~ 13482787 (-)
XLOC_004024 CR450764.5 non-coding downstream 1552622 12756143 ~ 12756275 (-)
XLOC_003998 NA non-coding downstream 1843488 12430155 ~ 12465409 (-)
XLOC_004041 CU019562.1 non-coding upstream 516137 14827374 ~ 14829324 (-)
XLOC_004042 NA non-coding upstream 562092 14873329 ~ 14874130 (-)

Expression


Co-expression Network