LOC110509828 (LOC106563258)


Basic Information

Item Value
gene id LOC110509828
gene name LOC106563258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23554932 ~ 23569102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590958.2
TTGTGCGTAGGCTACGTCATGTCCACGGAAAATGACTGACGATCGAAAAAAAGAGCTCTCATCTTTTGTAAATACTGAATGACTCGCCGAGCTGACTATGGATGCTTGTTCCTTGATTGACTTTAATAGTATCGGGGCTACAGTCTATCTGTCTAACTAAGAATTCCTTGACGCGTTCTCCAAATTCCAATCGTGTTCCAAACGAGAGGGATCTGAACAATAGCCCATTCTTATACATTGGCCTGGTAAGACGATAACAAAAATGTGTCTTTGTCGTTGAGCATAACAGACAAAGTAAAACCAGTGTATTTAGTTTCTACCGTTCAGGATCAAAACAAAACATTATGCCATTCCATGTTAGTTGCTGATGGTCGTATATTTTAGTTTATGACATGTTAAAAGCTGATGATGTTTCACTGTAGATTGTAATTCGTTTGATTGGCCCAGGCAGATGCCAGTCAAGCGTCTTTGTGCCTGCATGGATCTGGTTGTAGGCTTAACACAGCAGCATGGGCAGCGCGCATTCCAACCGGCCTAAATATATCTGATAGGGACGcagtgggggaaggagagggcgaCAGGGCTTAGCTCTGGATATTTAGGCTTCGTGGTTAAAACGAGAAATTGACCTTCTGAAACGTAGTACAGTAACCTTTTTCACCAAGGAGGCGAAGTGGGGCCAACCCAAAATGCCCGCAATTCCGAGTTCTAGGTCCAGGACGCGGGATCGGAACAACGTCCTGAGCAGACCCGAGTTCATGTCCCTGAACCAGCCCCTTTGGAGCGGCAACTCGGAGAGCCAGGGAAACTCAAGGCGACCTGGTCAACCCAAACACCAAGCAAACCTGCCGTGCGACCCGCAGGAACCTACTGACAATGCCAACAAGGATCGGAAAGAGCCCACGAAACTGCCCGAGGAGGACTGTATCCAGCTGAACCCTTCCTTCATGGGGATAGCGATGAGCTCCCTCCTCGCCATTGACATTTGTCTGTCCAAGCGTCTGGGGGTCTGCGCCTATACGTCGTCGTCTTGGGGCACGGTTCGTTCCATGGTCACCCTACTTGCGTTCACCGGGCACGGCATCACGTGGATCATTGGCACTATCGTGTGCCTGACAAGGAGTAATACGCAGGCGGGACAAGAGGTCTTGGTCAATCTATTACTTGCCCTCCTGCTTGACGTCATGACAGTGGCCGGAGTCCAGAAGCTGATCAAACGCAAAGGACCCTGGGAGATAAGTCCGGGATTCCTGGACTACAGTGTCATGGATGTGTACTCCTTCCCAGCGGCCCACGCCAGCCGTGCCGCCATGGTGTCCAAGTTCTTGCTTTCCCACCTGGTCCTGGCCGTCCCTCTTCGCATCCTGCTGGTGCTCTGGGCCTTCCTGGTGGGTATGTCCCGGGTGCTGTTGGGTAGACACCACCTGACCGACATGGCGTGCGGCTTCGCCCTGGGCCTTCTGCACTTCAGCCTGGTGGAGACAGTGTGGCTGTCGTCCAGCACCTGTCAAACCCTCATCTCTATAGGGACCCTCAGCTGGAGCTCCTTCTACTGAACACAGGGCCAGGAGTTCTTCCTGATGTGATCTGAGTTTTCCCTGATCAAGGCCTACTGTCAAAGGCTGCATTAGACCTACGTATAGGCTTTATCTTGATTTCCTTTCAATTATGTTGTTTGTATTTTTCTGCTGGAAACGATCATTTGTTTAAACTACACATTTTTGAGAAACAGGTGGACTGGACTCCAAATGTGAATAGATTTTTGCTGTCTTTGAATTGTGCTGTATGTGTTAAACAAAAACATGATTGTTGTCTTGAAAATCAGGGATTTTGCTACAATCTTAAATATTTATCCTATCCAAATACGTTTCAAAAGATAGTTTTGATTAGTTTAAGGCAAGCTGTTTCATCATAGATCTGTATGTTGTATATTCCACATTGTTTGCCTTCTCTGCTGCAATCTAAGCATTAACCAAGCAGATAGACACAGTTAGTTTATGGTGCTGATTTCATGCCTCACTGAGTAACTGAAAAACGTCTGTGGTGAAGTCAACTACAGTGCATCAGGCTTGGGGTTACCATTGATACTGtgacatatgtgtgtgtgtatatgggtgattgtgtgtgtgcatatgtgttacGCTCGTCGTTGGAAGGAGTAGACCAAGGTGTAGTGTGGTAGGCGTACATCTTTCTTTTATTGATGACactgaaaaaaacaacaaatacaaacCGAAACGCACAATTCTGTAGGGCTGGAAAGCAacagtacaaaaacaagatcccacaaactaaggtggaaaaaaggctgcctaagtatgatccccaatcagagacaacgatagacagctgcctctgattgggaaccatacccggccaacaaagaaatagacaacatagattgcccaccctagtcacaccctgacctaaccaaatagagaattaaaagatctctaaggtcagggcatgacaatatgtctgtgtgtgtttgtatgcctCCATGCAAGATTTCTTATGTGTGTACCTTTGTGAGTCAAACGTAATGTCTTTTGGAGGGTAAAAGTCACTGAGTAAACCTTTGCTGGTCCGGAATGTTCACTGGCATGTACAAAAAATGAATTATACCCAATATCAAAGGCTTTTTA

Function

NR:

description
inactive phospholipid phosphatase 7-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590958.2 True 2645 mRNA 0.47 2 23554932 23569102

Neighbor

gene id symbol gene type direction distance location
LOC110509345 LOC106563260 coding upstream 20715 23468400 ~ 23534217 (+)
LOC110509825 LOC106563261 coding upstream 89314 23399671 ~ 23465618 (+)
LOC110509824 LOC106563262 coding upstream 145992 23406003 ~ 23408940 (+)
LOC118945326 NA coding upstream 172510 23379905 ~ 23382422 (+)
LOC110509823 LOC106563263 coding upstream 229568 23311636 ~ 23325364 (+)
LOC110509829 LOC106563257 coding downstream 30340 23599442 ~ 23647056 (+)
LOC110509830 LOC106563255 coding downstream 94574 23663676 ~ 23667463 (+)
LOC110509833 neu1 coding downstream 134640 23703742 ~ 23707769 (+)
LOC100135930 fabp1 coding downstream 176998 23746100 ~ 23747954 (+)
LOC110509836 spr coding downstream 192667 23761769 ~ 23763898 (+)
G2166344 NA non-coding upstream 173985 23380651 ~ 23380947 (+)
G2166339 NA non-coding upstream 182627 23372100 ~ 23372305 (+)
G2166030 NA non-coding upstream 193718 23267880 ~ 23361214 (+)
G2166463 NA non-coding downstream 90022 23659124 ~ 23659329 (+)
G2166464 LOC100194703 non-coding downstream 90777 23659879 ~ 23660149 (+)
G2166518 NA non-coding downstream 152468 23721570 ~ 23722562 (+)
LOC110509838 lzts3 non-coding downstream 251280 23807094 ~ 23823864 (+)
G2165973 LOC106563265 other upstream 420642 23125780 ~ 23134290 (+)
G2165628 LOC106563266 other upstream 713451 22837071 ~ 22841481 (+)
G2163804 LOC106613263 other upstream 1953880 21600418 ~ 21601052 (+)
LOC110509811 LOC106563272 other upstream 2333751 21160126 ~ 21389662 (+)
LOC110509837 LOC106563250 other downstream 216517 23785060 ~ 23793640 (+)
LOC110509859 LOC106563234 other downstream 931306 24500361 ~ 24532163 (+)
LOC110509866 LOC106563223 other downstream 1630517 24944825 ~ 25202836 (+)
LOC110509876 LOC106563358 other downstream 2894199 26463263 ~ 26464615 (+)
LOC110509877 LOC106563217 other downstream 2959870 26504919 ~ 26532797 (+)

Expression


Co-expression Network