LOC110509832 (LOC106563254)


Basic Information

Item Value
gene id LOC110509832
gene name LOC106563254
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23669779 ~ 23699884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967796.1
gAGGAGAGGTGACCACGAAGAAACGGAAGACCAGTGGGATTTTTGCTCAACGTTCTTGGATCATTTTGGCCCCAcggagtgagatcttgcgtggagccccagatcaagggagattatcagtggtcttGTAATCTCCAGTCACTCCATTACCacccctcatcccctctccccaACCCACCCTGCGATGATGTCGTCACCCTCTGTGGCCACCCCCTTGACAACGTCCCCCCCCACCCTACGCCCCCCCTCCGCCCTagactctctctccatgtcctctctactGTCCGGGGACCTAGAGGATGagatgggggatggagagggggaggaggggggcctGGGGGACCTGGAGGTGAACCCGTATGATGGCTTGCCCTTCTCGTCACGCTACTACtctctgctggaggagaggaagacgcTTCCCTTGTGGAGCCTCAAGTACCGCCTGCTGGAGCACCTGGAGACACACAGCATGGTGGTGGTCAGTGCCCCCAGTGGCACAGGCAAGAGCACACAGgtgcCCCAGTGGTGTGTGGAGTATGCCCTGTCCCATGACTTCTCTCAGGGCTTGGTGTGCTGTTCCCAGCCCTATGCTGTGGCTGCAGCGAGTCTGGCCCTCAGGGTGGCTGATGAGATGGACCTGAGTCTGGGCCTGGAGGTGGGCTACTGGGTCCCCCACGACGATGGCTGTACCCCTGATACACTACTTAGgttCGTCAGTGACTCTCTGCTCCTGGGGGAGATGATGTCGGACCCCCTGCTGCGTCAGTATGGGGTGCTGGTGGTGGATGAGGTCCAGGAGCGCACTGTGCCCTCCGACGTCCTTCTGGGCTTGCTGCTGGACGTGTGCTGCCAGCGCCCCGACGACCTCCGTGTGGTCCTCCTCACCGACCCCTCCCTTGCGTCCAGCCTCGCCACCTTCCTGGGTGAGGGAGTTCCGGTTCTAACGCTGGATGAGCCTGTCGCGGATGAGGACCGGCCCGCCAGAGATACACCCTACACAGAGACAAGGAGGAGGGCACCGGTTGTCGTGGAAACGGTGTATAGGGAtcctggagggagggagtctgCGGCAGCGGCATGTTACATGGTGTTGGATCTCCACcgcaggggagaggaaggggatgtCATGGTCTTTCTCTCCAGTGCCCAGgaGATTGATGAGTGTGGCTCTCTGCTGGAGAAGGAGTCTGTTGCCCTGAGCCCTCAGCTGGGGACCCTCAGAGTTCTGCACCTCCACGCAGGCCTCGGAGGGGCTACCCAGCGCGTCTATGAAGCCGAGCCAGAAGGGCCTTCTGGGGACACGGAGGGATCCAATGGGTCTGAAGGACTGGAAGGGCCAGGGATAGGGGCGGGGACGGGAGCGACGCGCAGGGTCATCCTCACAGACACCCTGGGGGAggcctccttctctctatctggAGTCCGCTATGTCATAGACACAGGCATGCAACTCAAGACAGTTTACAACCCTCAAATTAGAGCGGACTCCCAGGTCCTGCGTCCCATCAGCCGGCAGCAGGCAGACATGCGGACGCAGAGGGTAAACGGTGACCTACCAGGTCTGTGTTTACGTCTGTACCCCCAGGCTCTGTATGAGGAGGGCATGGCAGAGGCCCGCAGCCCGGGGGTGGTGGAGGAGAACCTCAGTCACCTGGTGCTGCTGCTCAAGAGGCTGGACATCGCCGACATGGGCCAGTGCAAGTTCCTGGACAGGCCTGctCCAGAGGCTCTGATGCAGGCTCTAGAGGACCTGGACTACCTGGCAGCACTGGATGATGATGGGAACCTATCTGAGGTGGGCATCATTATGTCAGAGCTGCCCCTGGAGCCCCCTCTGGCTAAGGCCCTCATCGCTGCCTGCGAGTTTGACTGTGTCAACGAGCTGCTCACCATCGCTGCCATGCTCACAgCTTCCCCCTGCTTTGTGACCCCCACACCCCAGAGAGAGGAGGCAGCAGCCACTCACAGACGCCCCCTGTTGCACAACGAGGGAGACCACCTCACCCTCATCAACATCTACAACGCCTACATACAGCACAATGAGGATGATGCCTGGTGCACTACCAACTTCCTGAACCCTGCCGCATTACGATTGGCTGTGGTGATCAGGGCAGAGCTGCTGGAGGTGATGCAGCGAATAGAGTTGCCCGTCTCGCCTCCTTCCTTTGGTTGCCAAGACAACTGCACTAATATCAAGCGTGCACTCATCTCAGGGTTCTTCCTCAAGGTGGCTCATGATGTGGACGGCTCAGGTAACTACCTCCTGTTGACTCACCGTCACGTGGCTCACCTCCACCCCTTCTCCTCCTATCTGTGTCGCCGGCCGCGCCTCAACCCCCCCTCCTGGGTGCTCTACCACGAATTCACCATCTCCCATGACAACTGCATCTGCACCGCCTCCGAGGTGCACCCCCACATGTTGGTGGAGCTGGCCCCTCTGTACTACCTAGGCAACTTGCCGTCCAGCGAGGGACGGGACCTTCTGATGGAGCTGAGACAGAGTCTGCTGCCCCCAGAGGAGGTACAGGAGAGGGGCCCAGAAGGAGTCTATGATACACGCCACATTGAGGAACACTTAGACAGGACCGGAGATCCACGTAATCAAGACAGTACTGAGCTGTGTGTCATACAGTGACGGGAATGGTGTGGGCAACCAAAAGCAGAACCAAGAGCGGAGAACCTGAGAGAAGGGACTTGGATGCACTATGCAGGATACTCTCAAGTTTTACCAGGAATACACCATAGATCTATACTGTACTATTGCATGGACAGTTGATGAGGGAGAGTACGTACAGTACACTATCCAGCCATACAACATTGTATGGAGGCAATTGTTTCAATCTGAGTGAATAAGGGCTCACCTACAGGGGTTAGTGACATTTTTCTTAAATGAGattaaatgcattttattttgcaCATGAAAATGTGTGAGTTAAGGGCAATTTCAGACTGAATCTACAGAGTTCCTATAAAACAAACTGTATACTGGTATGcaaagtaatatatatatattgggaaTTATATATTGCCATGAATGTTGACTATTCTGCAAGAGTCCCTGATACTTCACTGAACAGACAGTCAGCTGTCAATAAGTGGACATGCATTCTTTCAATGATGACTGGTGAGGTATGGCATTGATGCTGTCACTTCCAGGGAATTTGTGTTTTTGACTGTTGTGGCACCAGCACCCATCTCTTCAGTAGAAACTATTGGTTGACCTAGGATCTCTCTGTCGAAGTGCCCAATCATAGAAGCTGACTTGATGTGGACTGGACATGTGATTGCAGGGCTCAGTTAGGTTTAAACAGGGTGATCTACCATTGTACGGAGCTTTAGAATCCAGTTTTTGTTACTGTTGTTCTTTGTATGCTAGTGTGTTTCCAATGTGTTGAAATAATATAATATTTGGTGTGTAAATCAAGGGTGTCGGGTCAGCCTCCCTCTATCTAAtaaatattttaaatatattttgaacaTGAAA
>XM_036967795.1
TTGTCACTCTCACGAGGCTGAAGTAATAACAAGCTCAAATACTTAAGACATTGACTCGAATTTAGGTTGTGACTTTAGATTTCGAGAAAATTCACAACTAAGGAATACCCtatcacttctctcattgacttatCAAACCGCAAAtggtctgtttggtctgtttctcaagcgttcccggaagtcttgcgatgttgcgcatctgggtttagaaactgtgGCTCTATGTTCACAACATACTTCAGAAACTAACGTCTGTGGGCGTGGCGAAGCGTTTGACCGGAGCAAGGAGTTTGCTTAGACAGGCAAGCGATTCGATAGATCAACAGCGGACGACGAGCTCTATTTTATTAATTAATGTCAACGGTTACGGAGAAACCAGAGGCAGAGAAGAAGCGAAGAGAGAATCTGTGAATGGTTGCAAAAAAATGAAACATTGTATCCGCATATTGTCTCTTCCAAGAAATGTGTGTGCAACAACAGTGAGCAGTAGAACGTTTCACTGACAGCTCAGCGGGTTATATTGTTTTGCTGGATATCCCGCGCCTTGGTGGGGATTTTAGGAGACTCTAGAGAAATGTGTCGAAGGTAATCTCCAGTCACTCCATTACCacccctcatcccctctccccaACCCACCCTGCGATGATGTCGTCACCCTCTGTGGCCACCCCCTTGACAACGTCCCCCCCCACCCTACGCCCCCCCTCCGCCCTagactctctctccatgtcctctctactGTCCGGGGACCTAGAGGATGagatgggggatggagagggggaggaggggggcctGGGGGACCTGGAGGTGAACCCGTATGATGGCTTGCCCTTCTCGTCACGCTACTACtctctgctggaggagaggaagacgcTTCCCTTGTGGAGCCTCAAGTACCGCCTGCTGGAGCACCTGGAGACACACAGCATGGTGGTGGTCAGTGCCCCCAGTGGCACAGGCAAGAGCACACAGgtgcCCCAGTGGTGTGTGGAGTATGCCCTGTCCCATGACTTCTCTCAGGGCTTGGTGTGCTGTTCCCAGCCCTATGCTGTGGCTGCAGCGAGTCTGGCCCTCAGGGTGGCTGATGAGATGGACCTGAGTCTGGGCCTGGAGGTGGGCTACTGGGTCCCCCACGACGATGGCTGTACCCCTGATACACTACTTAGgttCGTCAGTGACTCTCTGCTCCTGGGGGAGATGATGTCGGACCCCCTGCTGCGTCAGTATGGGGTGCTGGTGGTGGATGAGGTCCAGGAGCGCACTGTGCCCTCCGACGTCCTTCTGGGCTTGCTGCTGGACGTGTGCTGCCAGCGCCCCGACGACCTCCGTGTGGTCCTCCTCACCGACCCCTCCCTTGCGTCCAGCCTCGCCACCTTCCTGGGTGAGGGAGTTCCGGTTCTAACGCTGGATGAGCCTGTCGCGGATGAGGACCGGCCCGCCAGAGATACACCCTACACAGAGACAAGGAGGAGGGCACCGGTTGTCGTGGAAACGGTGTATAGGGAtcctggagggagggagtctgCGGCAGCGGCATGTTACATGGTGTTGGATCTCCACcgcaggggagaggaaggggatgtCATGGTCTTTCTCTCCAGTGCCCAGgaGATTGATGAGTGTGGCTCTCTGCTGGAGAAGGAGTCTGTTGCCCTGAGCCCTCAGCTGGGGACCCTCAGAGTTCTGCACCTCCACGCAGGCCTCGGAGGGGCTACCCAGCGCGTCTATGAAGCCGAGCCAGAAGGGCCTTCTGGGGACACGGAGGGATCCAATGGGTCTGAAGGACTGGAAGGGCCAGGGATAGGGGCGGGGACGGGAGCGACGCGCAGGGTCATCCTCACAGACACCCTGGGGGAggcctccttctctctatctggAGTCCGCTATGTCATAGACACAGGCATGCAACTCAAGACAGTTTACAACCCTCAAATTAGAGCGGACTCCCAGGTCCTGCGTCCCATCAGCCGGCAGCAGGCAGACATGCGGACGCAGAGGGTAAACGGTGACCTACCAGGTCTGTGTTTACGTCTGTACCCCCAGGCTCTGTATGAGGAGGGCATGGCAGAGGCCCGCAGCCCGGGGGTGGTGGAGGAGAACCTCAGTCACCTGGTGCTGCTGCTCAAGAGGCTGGACATCGCCGACATGGGCCAGTGCAAGTTCCTGGACAGGCCTGctCCAGAGGCTCTGATGCAGGCTCTAGAGGACCTGGACTACCTGGCAGCACTGGATGATGATGGGAACCTATCTGAGGTGGGCATCATTATGTCAGAGCTGCCCCTGGAGCCCCCTCTGGCTAAGGCCCTCATCGCTGCCTGCGAGTTTGACTGTGTCAACGAGCTGCTCACCATCGCTGCCATGCTCACAgCTTCCCCCTGCTTTGTGACCCCCACACCCCAGAGAGAGGAGGCAGCAGCCACTCACAGACGCCCCCTGTTGCACAACGAGGGAGACCACCTCACCCTCATCAACATCTACAACGCCTACATACAGCACAATGAGGATGATGCCTGGTGCACTACCAACTTCCTGAACCCTGCCGCATTACGATTGGCTGTGGTGATCAGGGCAGAGCTGCTGGAGGTGATGCAGCGAATAGAGTTGCCCGTCTCGCCTCCTTCCTTTGGTTGCCAAGACAACTGCACTAATATCAAGCGTGCACTCATCTCAGGGTTCTTCCTCAAGGTGGCTCATGATGTGGACGGCTCAGGTAACTACCTCCTGTTGACTCACCGTCACGTGGCTCACCTCCACCCCTTCTCCTCCTATCTGTGTCGCCGGCCGCGCCTCAACCCCCCCTCCTGGGTGCTCTACCACGAATTCACCATCTCCCATGACAACTGCATCTGCACCGCCTCCGAGGTGCACCCCCACATGTTGGTGGAGCTGGCCCCTCTGTACTACCTAGGCAACTTGCCGTCCAGCGAGGGACGGGACCTTCTGATGGAGCTGAGACAGAGTCTGCTGCCCCCAGAGGAGGTACAGGAGAGGGGCCCAGAAGGAGTCTATGATACACGCCACATTGAGGAACACTTAGACAGGACCGGAGATCCACGTAATCAAGACAGTACTGAGCTGTGTGTCATACAGTGACGGGAATGGTGTGGGCAACCAAAAGCAGAACCAAGAGCGGAGAACCTGAGAGAAGGGACTTGGATGCACTATGCAGGATACTCTCAAGTTTTACCAGGAATACACCATAGATCTATACTGTACTATTGCATGGACAGTTGATGAGGGAGAGTACGTACAGTACACTATCCAGCCATACAACATTGTATGGAGGCAATTGTTTCAATCTGAGTGAATAAGGGCTCACCTACAGGGGTTAGTGACATTTTTCTTAAATGAGattaaatgcattttattttgcaCATGAAAATGTGTGAGTTAAGGGCAATTTCAGACTGAATCTACAGAGTTCCTATAAAACAAACTGTATACTGGTATGcaaagtaatatatatatattgggaaTTATATATTGCCATGAATGTTGACTATTCTGCAAGAGTCCCTGATACTTCACTGAACAGACAGTCAGCTGTCAATAAGTGGACATGCATTCTTTCAATGATGACTGGTGAGGTATGGCATTGATGCTGTCACTTCCAGGGAATTTGTGTTTTTGACTGTTGTGGCACCAGCACCCATCTCTTCAGTAGAAACTATTGGTTGACCTAGGATCTCTCTGTCGAAGTGCCCAATCATAGAAGCTGACTTGATGTGGACTGGACATGTGATTGCAGGGCTCAGTTAGGTTTAAACAGGGTGATCTACCATTGTACGGAGCTTTAGAATCCAGTTTTTGTTACTGTTGTTCTTTGTATGCTAGTGTGTTTCCAATGTGTTGAAATAATATAATATTTGGTGTGTAAATCAAGGGTGTCGGGTCAGCCTCCCTCTATCTAAtaaatattttaaatatattttgaacaTGAAA
>TU2476700
CCGGAGCAAGGAGTTTGCTTAGACAGGCAAGCGATTCGATAGATCAACAGCGGACGACGAGCTCTATTTTATTAATTAATGTCAACGGTTACGGAGAAACCAGAGGCAGAGAAGAAGCGAAGAGAGAATCTGTGAATGGTTGCAAAAAAATGAAACATTGTATCCGCATATTGTCTCTTCCAAGAAATGTGTGTGCAACAACAGTGAGCAGTAGAACGTTTCACTGACAGCTCAGCGGGTTATATTGTTTTGCTGGATATCCCGCGCCTTGGTGGGGATTTTAGGAGACTCTAGAGAAATGTGTCGAAGGTAATCTCCAGTCACTCCATTACCacccctcatcccctctccccaACCCACCCTGCGATGATGTCGTCACCCTCTGTGGCC

Function

NR:

description
PREDICTED: ATP-dependent RNA helicase DQX1-like isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967796.1 False 3484 mRNA 0.55 12 23669779 23687330
XM_036967795.1 False 3942 mRNA 0.53 12 23669779 23699884
TU2476700 True 390 lncRNA 0.47 2 23685255 23699608

Neighbor

gene id symbol gene type direction distance location
LOC110509827 LOC106563259 coding downstream 116981 23540883 ~ 23552798 (-)
LOC110509822 LOC106563264 coding downstream 409385 23193002 ~ 23260394 (-)
LOC110509821 kad coding downstream 477810 23181355 ~ 23191969 (-)
LOC110509820 LOC106563265 coding downstream 500141 23126610 ~ 23169638 (-)
LOC110509819 LOC106563266 coding downstream 712011 22837054 ~ 22957768 (-)
LOC110509834 LOC106563251 coding upstream 48205 23748089 ~ 23756826 (-)
LOC110509835 spr coding upstream 60246 23760130 ~ 23762602 (-)
LOC110509841 LOC106563247 coding upstream 153475 23853359 ~ 23878838 (-)
arrdc1b LOC106563241 coding upstream 427074 24126958 ~ 24195966 (-)
LOC110509846 NA coding upstream 501518 24201402 ~ 24207421 (-)
G2166776 NA non-coding downstream 22728 23644690 ~ 23647051 (-)
G2166757 NA non-coding downstream 41272 23599473 ~ 23628507 (-)
G2166708 NA non-coding downstream 85115 23519958 ~ 23584664 (-)
G2166658 LOC106563260 non-coding downstream 165825 23501585 ~ 23503954 (-)
G2166682 NA non-coding downstream 181271 23488139 ~ 23488508 (-)
G2166867 LOC106563249 non-coding upstream 118613 23818497 ~ 23819296 (-)
G2166866 NA non-coding upstream 120576 23820460 ~ 23823879 (-)
G2167215 NA non-coding upstream 184150 23884034 ~ 23884338 (-)
G2167217 NA non-coding upstream 187190 23887074 ~ 23887376 (-)
G2167303 NA non-coding upstream 318202 24018086 ~ 24020111 (-)
G2163923 NA other downstream 2056818 21612563 ~ 21612961 (-)
G2163913 NA other downstream 2072284 21596551 ~ 21597495 (-)
rabepk rabepk other downstream 2523442 21138218 ~ 21146494 (-)
surf4 LOC106563281 other downstream 2692831 20970332 ~ 20978032 (-)
LOC110509849 enp2 other upstream 583666 24231769 ~ 24286433 (-)
LOC110509347 LOC106565457 other upstream 700965 24400755 ~ 24407113 (-)
LOC110509858 LOC106563233 other upstream 830306 24530156 ~ 24537449 (-)
G2167965 LOC106563228 other upstream 1147269 24847153 ~ 24869810 (-)
LOC110509868 LOC106563221 other upstream 1763507 25447869 ~ 25528834 (-)

Expression


Co-expression Network