LOC110509834 (LOC106563251)


Basic Information

Item Value
gene id LOC110509834
gene name LOC106563251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23748089 ~ 23756826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590967.2
AGTCCCAGGAAGGCCAGTCTATATTTGGAGGGTGGGGTCGGGCTGAGGAGAAGGGCAGGTGCTGAACGTTTTAGAAGCGCACTCCAGACAGCActactccttctccctctctttttaacCTCTATCTGTGAGGTGTTCCAGTCTTGTCCACTTGGTAATGACTCTGGATATGGACAACGTAGAGGTGTTTGATGCTGGGGAGAAGGGCAGGGGTCTTAGGACCACCAAAGACCTTTGTCCTGGGGAGGTAGTGTTCGCTGAGCCCAGCTTCGCTGCAGTGGTCTTCGACAGTCTGTCTCAGCAGGTGTGCCATAGCTGCTTCCGTCGCCAGGCCAACCTGCACCGCTGCGCCCAGTGTAAATTCGCCCACTACTGTGACCGAACCTGCCAGACTGCATGCTGGGATGAGCACAAGCAGGAGTGTGCCGCCATCAAGAAGTACGAAAAGGCCCCTAATGAGAATGTACGTCTTACTGCCCGTGTGCTGTGGCGCATACAGAAGGACACAGGCATTGTGTCGGACGGCCAGCTGACTTCTGTGGACCAGCTGGAGGACCACGTGGCCGACATGCTCGCTGAGGACTTCAAAGAGCTCAAGATCGACATGCAAAACTTCCTGGACTACTGTCCCAAAACCAGGCATGGCAAGGAGTACATCTCACACATCTTTGGCATAATCAAGTGTAATGGCTTTACTCTGAGTGACCAGAGGGGTCTGCAGGCGGTGGGAGTGGGTCTGTTCCCTAACCTGTGTCTGGTCAACCACGACTGCTGGCCCAACTGTACTGTCATCCTGAACCATGGCAATCAGTCAACTCTGAACGCAGCCTACCACTCTAAAAGGAGGATCGAGCTGCGTGCGCTGAGTAAGATTTCTGAGAACGAGGAACTGACGGTGGGCTACGTGGACTTCCTGAATGTGTCAACGGACCGCCAGCGTGCCCTGAAGCATCAGTACCACTTTGACTGTACCTGTAAAAGCTGCAGCGAGCACCTCAAGGATGACCTAAAGATGGCTGCCAAGGAGATCGATGGAAACAAGCCCTCTGATCAGCTGGTAAAGGAGGTACAGGAGTTCAGTTTGGAGTGCTTGGCCAAGGTTGAGGCAGCTTGCACTGCTGGTGACTTCCATGAGGTGGTGAAGCTGTGTCGTGAGTGTCTACACAAACAGGAGCCCGTGTTTGGTAAGACACACCTGTACCATCTGCGCATGCTGAGTACAGCCAGTGAGGTGCTGTCCTACCTGCAGTTCTTCTCAGAGGCTGCAGAATACGCAGGCAGACTGGTGGAGGGCTACATGAAGTTGTACCATCCCAATAATGCCCATTTGGGCATGGCCATCATGCGTGCTGGTGTGACCCACTGGCACGCAGGGCTCATCAAGGTTGGCCATGAAATGATCTGCAAGGCCTACGCCATCCTCATGGTCACCCACGGACCCAACCACCCTATTACCAAGGACCTTGAGTCAATGCGTATGCAGACTGAGATGGAGCTGAGGATGTTCAAGCAGAAtgagcatgtctaccacagcatgaGAGAGGCTGCCCTGCAGAACAAGCCCATGGCTGAAGCAAGCAGTGTTGAGGACAACATAAAGGCACTCAGCCACAAGCAATAAGCTTCTGTAGACAATGCATTTCAAGGGTATGAGTGGTCACCAAATCTACCCAGAAGTATCAATTCTCACATTGAAAGTGGGTTACACAAGTTTCGCAATAGCTAGATATTGTTGGAATGTAAGTAGTGAAGTTCCTGCTTTTAACATTGAGATTTCCATATGTATGAACTACAATATACAAGGAGGCCTCATCTACATCTGTAAGGCTCAAAGTACCTGTGAAATCATGATTGCTCCCACCTTTATGCTAGTAAAGATTGAATCAGTGTACCAAC
>XM_021590969.2
AGTCCCAGGAAGGCCAGTCTATATTTGGAGGGTGGGGTCGGGCTGAGGAGAAGGGCAGGTGCTGAACGTTTTAGAAGCGCACTCCAGACAGCActactccttctccctctctttttaacCTCTATCTGTGAGGTGTTCCAGTCTTGTCCACTTGGTAATGACTCTGGATATGGACAACGTAGAGGTGTTTGATGCTGGGGAGAAGGGCAGGGGTCTTAGGACCACCAAAGACCTTTGTCCTGGGGAGGTAGTGTTCGCTGAGCCCAGCTTCGCTGCAGTGGTCTTCGACAGTCTGTCTCAGCAGGTGTGCCATAGCTGCTTCCGTCGCCAGGCCAACCTGCACCGCTGCGCCCAGTGTAAATTCGCCCACTACTGTGACCGAACCTGCCAGACTGCATGCTGGGATGAGCACAAGCAGGAGTGTGCCGCCATCAAGAAGTACGAAAAGGCCCCTAATGAGAATGTACGTCTTACTGCCCGTGTGCTGTGGCGCATACAGAAGGACACAGGCATTGTGTCGGACGGCCAGCTGACTTCTGTGGACCAGCTGGAGGACCACGTGGCCGACATGCTCGCTGAGGACTTCAAAGAGCTCAAGATCGACATGCAAAACTTCCTGGACTACTGTCCCAAAACCAGGCATGGCAAGGAGTACATCTCACACATCTTTGGCATAATCAAGTGTAATGGCTTTACTCTGAGTGACCAGAGGGGTCTGCAGGCGGTGGGAGTGGGTCTGTTCCCTAACCTGTGTCTGGTCAACCACGACTGCTGGCCCAACTGTACTGTCATCCTGAACCATGGCAAGATCGAGCTGCGTGCGCTGAGTAAGATTTCTGAGAACGAGGAACTGACGGTGGGCTACGTGGACTTCCTGAATGTGTCAACGGACCGCCAGCGTGCCCTGAAGCATCAGTACCACTTTGACTGTACCTGTAAAAGCTGCAGCGAGCACCTCAAGGATGACCTAAAGATGGCTGCCAAGGAGATCGATGGAAACAAGCCCTCTGATCAGCTGGTAAAGGAGGTACAGGAGTTCAGTTTGGAGTGCTTGGCCAAGGTTGAGGCAGCTTGCACTGCTGGTGACTTCCATGAGGTGGTGAAGCTGTGTCGTGAGTGTCTACACAAACAGGAGCCCGTGTTTGGTAAGACACACCTGTACCATCTGCGCATGCTGAGTACAGCCAGTGAGGTGCTGTCCTACCTGCAGTTCTTCTCAGAGGCTGCAGAATACGCAGGCAGACTGGTGGAGGGCTACATGAAGTTGTACCATCCCAATAATGCCCATTTGGGCATGGCCATCATGCGTGCTGGTGTGACCCACTGGCACGCAGGGCTCATCAAGGTTGGCCATGAAATGATCTGCAAGGCCTACGCCATCCTCATGGTCACCCACGGACCCAACCACCCTATTACCAAGGACCTTGAGTCAATGCGTATGCAGACTGAGATGGAGCTGAGGATGTTCAAGCAGAAtgagcatgtctaccacagcatgaGAGAGGCTGCCCTGCAGAACAAGCCCATGGCTGAAGCAAGCAGTGTTGAGGACAACATAAAGGCACTCAGCCACAAGCAATAAGCTTCTGTAGACAATGCATTTCAAGGGTATGAGTGGTCACCAAATCTACCCAGAAGTATCAATTCTCACATTGAAAGTGGGTTACACAAGTTTCGCAATAGCTAGATATTGTTGGAATGTAAGTAGTGAAGTTCCTGCTTTTAACATTGAGATTTCCATATGTATGAACTACAATATACAAGGAGGCCTCATCTACATCTGTAAGGCTCAAAGTACCTGTGAAATCATGATTGCTCCCACCTTTATGCTAGTAAAGATTGAATCAGTGTACCAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590967.2 False 1896 mRNA 0.51 10 23748089 23756826
XM_021590969.2 True 1857 mRNA 0.52 9 23748089 23756826

Neighbor

gene id symbol gene type direction distance location
LOC110509832 LOC106563254 coding downstream 48205 23669779 ~ 23699884 (-)
LOC110509827 LOC106563259 coding downstream 195291 23540883 ~ 23552798 (-)
LOC110509822 LOC106563264 coding downstream 487695 23193002 ~ 23260394 (-)
LOC110509821 kad coding downstream 556120 23181355 ~ 23191969 (-)
LOC110509820 LOC106563265 coding downstream 578451 23126610 ~ 23169638 (-)
LOC110509835 spr coding upstream 3304 23760130 ~ 23762602 (-)
LOC110509841 LOC106563247 coding upstream 96533 23853359 ~ 23878838 (-)
arrdc1b LOC106563241 coding upstream 370132 24126958 ~ 24195966 (-)
LOC110509846 NA coding upstream 444576 24201402 ~ 24207421 (-)
mamdc4 mamdc4 coding upstream 452567 24209393 ~ 24226530 (-)
G2166810 NA non-coding downstream 31368 23692385 ~ 23716721 (-)
G2166776 NA non-coding downstream 101038 23644690 ~ 23647051 (-)
G2166757 NA non-coding downstream 119582 23599473 ~ 23628507 (-)
G2166708 NA non-coding downstream 163425 23519958 ~ 23584664 (-)
G2166867 LOC106563249 non-coding upstream 61671 23818497 ~ 23819296 (-)
G2166866 NA non-coding upstream 63634 23820460 ~ 23823879 (-)
G2167215 NA non-coding upstream 127208 23884034 ~ 23884338 (-)
G2167217 NA non-coding upstream 130248 23887074 ~ 23887376 (-)
G2167303 NA non-coding upstream 261260 24018086 ~ 24020111 (-)
G2163923 NA other downstream 2135128 21612563 ~ 21612961 (-)
G2163913 NA other downstream 2150594 21596551 ~ 21597495 (-)
rabepk rabepk other downstream 2601752 21138218 ~ 21146494 (-)
surf4 LOC106563281 other downstream 2771141 20970332 ~ 20978032 (-)
LOC110509849 enp2 other upstream 526724 24231769 ~ 24286433 (-)
LOC110509347 LOC106565457 other upstream 644023 24400755 ~ 24407113 (-)
LOC110509858 LOC106563233 other upstream 773364 24530156 ~ 24537449 (-)
G2167965 LOC106563228 other upstream 1090327 24847153 ~ 24869810 (-)
LOC110509868 LOC106563221 other upstream 1706565 25447869 ~ 25528834 (-)

Expression


Co-expression Network