LOC110509835 (spr)


Basic Information

Item Value
gene id LOC110509835
gene name spr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23760130 ~ 23762602 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590971.2
GGAGTGCTCATTCGTCATGTTTATTTTTGGCATCCATATCCGTTCCTCAATCTAATCGATTTGAACAATTATTTTAAAACGGTTCTTTACAAAACTCTCCCAGCCTTTATAAGTAGAAGCTGTACATTTCCGCTCCCATTTCACCAAAATGCAGGCCAATGGTATCTCCAACGTAATTATACCAGACGCGAAGGACCTAGGGAGAGCGCTGTGCATCATCACCGGGGCGTCCAAAGGATTTGGCCGAACCATAGCGAAAGAGATTTCCCTGTTACTTAAACCGAGGTCGGTGCTTGTTTTGGCCGCTCGCTCCGATGAGAAATTGCGGGAACTCCAGGAAAATTTGGCTTCATCGGATGCGGGCAGGGCAGGGTTGGTAACTCGTTGTGTTGTCGTAGACCTGGGAATGAAAGAAGGGGTGGAAAGTGTCATCAGGGCGGCGAAAGAGATTTCCTCCGAGGATATTGAACATCTCATACTGATAAACAATGCTGCCTCTCTGGGAGACGTGTCGCGCTATGCCCAGAGTTTCACCAACATGGCGGAGGTGGACTCCTACCTGTCACTCAACGTAAGCTCCGCCCTCAGCCTGACAGCCGGCCTGCTGCAGGTGTTCCCACGACGACAGGGGCTGCGGCGCAGTGTAGTCAACGTGAGCTCGTTGTGTGCCCTGCAGCCCCTCCCCTCCTGGGTGCTGTACTGCACAGGCAAGGCAGCCAGAGACATGATGTTCCGTGTGCTGGCAGAGGAGGAGCCAGACCTTCGTGTACTCAACTATTCCCCAGGTCCCCTGGACACGGACATGCAGGTGGAGGCCAGGGACTGCACGGCAGACCCTGGTGTGAGGAAGTCCTTCTCAGTCATGCTCTCCCAGGGTCAGCTGCTTACCTGTGAAGACTCCTGTGCTAAGCTGATGAAGGTGCTGCTGGAGGATGAATACCCCTCCGGAGCACACCTTGATTTCTATGAtctgtagggagagaggggggaactaGAAGACACAGTGTGGCTCAGACTGGAGATGAATATTTCTGGTGTAGGTACAATTTTATAGCCAGAACAACTGGTACAGATTAGTTAGTTCGCTTCAAAGATGGTTTTGGGTTAATAAGATCtgattctaaacctgttttcaaagGTGGTAAGGATTGAGTGAACCTTTTACCGaatcaggagacatggagagaaggAAGGTTGAAGAGGTTTCTGTCATCCAATGCCATAGGCCTACTGTAGTTACTGAGTTTGGCAAACTATCCCGAGTCCATGTTAGGGCCTAACATTCCATCTCATGACAGTACTGTTCTAATTTGCCTTGGCACTTTTGGTACCAAAATAGCATATATTAAAGTTCTTTATCTCAAACAAA

Function

symbol description
spr Predicted to enable protein homodimerization activity and sepiapterin reductase activity. Involved in nitric oxide biosynthetic process. Located in cytosol and nucleoplasm. Implicated in dystonia and sepiapterin reductase deficiency.

NR:

description
sepiapterin reductase

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004757 sepiapterin reductase activity molecular_function

KEGG:

id description
K00072 SPR; sepiapterin reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590971.2 True 1369 mRNA 0.49 3 23760130 23762602

Neighbor

gene id symbol gene type direction distance location
LOC110509834 LOC106563251 coding downstream 3304 23748089 ~ 23756826 (-)
LOC110509832 LOC106563254 coding downstream 60246 23669779 ~ 23699884 (-)
LOC110509827 LOC106563259 coding downstream 207332 23540883 ~ 23552798 (-)
LOC110509822 LOC106563264 coding downstream 499736 23193002 ~ 23260394 (-)
LOC110509821 kad coding downstream 568161 23181355 ~ 23191969 (-)
LOC110509841 LOC106563247 coding upstream 90757 23853359 ~ 23878838 (-)
arrdc1b LOC106563241 coding upstream 364356 24126958 ~ 24195966 (-)
LOC110509846 NA coding upstream 438800 24201402 ~ 24207421 (-)
mamdc4 mamdc4 coding upstream 446791 24209393 ~ 24226530 (-)
phpt1 phpt1 coding upstream 464799 24227401 ~ 24231728 (-)
G2166810 NA non-coding downstream 43409 23692385 ~ 23716721 (-)
G2166776 NA non-coding downstream 113079 23644690 ~ 23647051 (-)
G2166757 NA non-coding downstream 131623 23599473 ~ 23628507 (-)
G2166708 NA non-coding downstream 175466 23519958 ~ 23584664 (-)
G2166867 LOC106563249 non-coding upstream 55895 23818497 ~ 23819296 (-)
G2166866 NA non-coding upstream 57858 23820460 ~ 23823879 (-)
G2167215 NA non-coding upstream 121432 23884034 ~ 23884338 (-)
G2167217 NA non-coding upstream 124472 23887074 ~ 23887376 (-)
G2167303 NA non-coding upstream 255484 24018086 ~ 24020111 (-)
G2163923 NA other downstream 2147169 21612563 ~ 21612961 (-)
G2163913 NA other downstream 2162635 21596551 ~ 21597495 (-)
rabepk rabepk other downstream 2613793 21138218 ~ 21146494 (-)
surf4 LOC106563281 other downstream 2783182 20970332 ~ 20978032 (-)
LOC110509849 enp2 other upstream 520948 24231769 ~ 24286433 (-)
LOC110509347 LOC106565457 other upstream 638247 24400755 ~ 24407113 (-)
LOC110509858 LOC106563233 other upstream 767588 24530156 ~ 24537449 (-)
G2167965 LOC106563228 other upstream 1084551 24847153 ~ 24869810 (-)
LOC110509868 LOC106563221 other upstream 1700789 25447869 ~ 25528834 (-)

Expression


Co-expression Network