LOC100301660 (LOC106563362)


Basic Information

Item Value
gene id LOC100301660
gene name LOC106563362
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23851125 ~ 23852822 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590976.2
ATCCAAATGGGAGAGATTAATTTTGAAAGCTGAGTCATCAAATATCAGATCGGACATTGGGGGTGGTCCCATTGGGGTGCAAAGTGTTGTGATGACGTAGGCGCAAAGCTTAAGCTTTATCAATTGGTACGATCCCTATAAATAACGGAAAGTTCCTAGCAGACATTCGAAAAGAAAAACCGAGCCCTTTGAAAGAGTTCAGTTGTAGCCGACAGTATCAATTGGACGAAGCAGTTCAGACTGAACAAGATGTCATATTCTACGTTTCCACTGCTGTGGGTCCTGGGGCTCCTCGCGCTCTCCTCCGCGTGCTACATCCAGAACTGTCCGCGAGGCGGGAAGCGCTCTTTTCCTGATCTTCCACGACAGTGCATGTCGTGTGGCCCCGGGGACAGGGGCCGCTGCTTTGGCCCCAATATCTGCTGTGGGGAGGGGATGGGCTGCTACGTGGGCTCGCCAGAGGCAGCTGGCTGCGTGGAGGAGAACTACCTGCCCTCCCCCTGCGAGGCTGGAGGAAGAGTGTGTGGCTCTGAGGGAAGCTGTGCTGCATCCGGAGTCTGCTGTGACTCAGAGAGTTGTGTGCTAGACCCAGACTGCCTAGAAGACAGTAAACGTCAGTCACCCAGCAAACAGAACGCTGCCTTAATGGGTGGTTTGGcaggagacctgctgcggatccTACATgccaccagcagagggagacctCAGTAACCAACCACTGCCCATCCCTCACCTGAACACACCCAGAATAGAGCTTAAATTCACCATTTCACATGCACTACTACAAAAACAAACCTCACACAGattcacagacacacagcagaagTAGAGAGCAGGCTTGCTACATAAGGGGGAAATGTATCAGCTCTACATGAATGTTTACTGTGTGCTCAGTAGCCTTCAGTAAGTTGTAATTTCTAATGCTTCAACTCAAATATGCATTGTACAATCTACTGGGGTGGAAGGGATGTAAATATGTAGTTAATAAATATTTTCTTGCACTATTAAAATGTG

Function

NR:

description
vasotocin-neurophysin VT 1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005185 neurohypophyseal hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590976.2 True 1014 mRNA 0.50 3 23851125 23852822

Neighbor

gene id symbol gene type direction distance location
LOC110509839 fastkd5 coding upstream 23288 23824234 ~ 23827837 (+)
LOC110509838 lzts3 coding upstream 29991 23807094 ~ 23823864 (+)
LOC110509837 LOC106563250 coding upstream 57485 23785060 ~ 23793640 (+)
LOC110509836 spr coding upstream 87227 23761769 ~ 23763898 (+)
LOC100135930 fabp1 coding upstream 103171 23746100 ~ 23747954 (+)
LOC110509842 LOC106563245 coding downstream 31300 23884122 ~ 24035777 (+)
LOC110509843 LOC106563244 coding downstream 190105 24042927 ~ 24045863 (+)
LOC110509844 LOC106563243 coding downstream 206514 24059336 ~ 24118882 (+)
LOC110509856 LOC100380649 coding downstream 557476 24410298 ~ 24432688 (+)
LOC110509859 LOC106563234 coding downstream 647539 24500361 ~ 24532163 (+)
G2166518 NA non-coding upstream 128563 23721570 ~ 23722562 (+)
G2166464 LOC100194703 non-coding upstream 190976 23659879 ~ 23660149 (+)
G2166463 NA non-coding upstream 191796 23659124 ~ 23659329 (+)
LOC110509829 LOC106563257 non-coding upstream 204071 23599442 ~ 23647056 (+)
G2166498 NA non-coding downstream 748 23853570 ~ 23854597 (+)
G2166500 LOC106563247 non-coding downstream 3555 23856377 ~ 23857281 (+)
G2166889 NA non-coding downstream 26321 23879143 ~ 23879458 (+)
G2166897 NA non-coding downstream 34017 23886839 ~ 23887041 (+)
G2166891 NA non-coding downstream 183031 24035853 ~ 24036826 (+)
LOC110509345 LOC106563260 other upstream 325794 23468400 ~ 23534217 (+)
G2165973 LOC106563265 other upstream 716835 23125780 ~ 23134290 (+)
G2165628 LOC106563266 other upstream 1009644 22837071 ~ 22841481 (+)
G2163804 LOC106613263 other upstream 2250073 21600418 ~ 21601052 (+)
LOC110509866 LOC106563223 other downstream 1346797 24944825 ~ 25202836 (+)
LOC110509876 LOC106563358 other downstream 2610479 26463263 ~ 26464615 (+)
LOC110509877 LOC106563217 other downstream 2676150 26504919 ~ 26532797 (+)
G2170458 LOC106563185 other downstream 3469283 27322105 ~ 27324765 (+)

Expression


Co-expression Network