LOC110509841 (LOC106563247)


Basic Information

Item Value
gene id LOC110509841
gene name LOC106563247
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23853359 ~ 23878838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967431.1
TCCATTGGTGTTTTCCATCTCTTCTAAAGTATCTCTGATCATGCACCTCTAGTGGTGATTTATCTGAATCTCATGAAGTCGGTCAGCGTTTACAAACTACTGGATTAGACGAACAGAGGCGCACGAGCGGGATCTGACATCGTGCATCATGTCACGTCCTAGTAATGCCTCACCCAAACCTGCCATGGGCAAATCAAAACACTCTGGTGGTGGGGGGCCCAGGGGCAAAGGGCTGAAAGACATACGCATCGACGAAGAAGTTAAGATTGCTGTGAACATCTCCCTTGAGAGGTTTCAGTACAGTGAGCAAAAAGAAATGGAGTTCCCTTCCTCCCTGTCTAGTACTGAGAGAGCCTTCATCCATCGCTTTGCACAGTCCCTTGGATATATCTCTAAAAGCAGAGGAAAAGGATCAAGCCGGACCCTCACTATCAGAAAGAAGGATGGCTCGGAGACGGCCCAGTCCatcatgactttcaacctttctCACAATTCCAAGCACGCTGTGCGGAGCCTGCTGCAGAGGTTCCCCATCACCAACAAGGAGCGCACAGACCTACTGCCTCGCACTGAGAGGGGCTTGTCTGTGGCCATTGAGGCTGAGAGCAGCCGTGACAAGAACAGGACCAGTGGGCGGCTCAACAACGGCATTCCCCAGGTGCCCCAGAAGAGGGGCCCATCTGAACTGGACTTCTTCCGCAGCTCACTTCCTGTGTACGAGCGCCAGGAGGAGATCGTCCAGGTCATCAAAGACAACCGTGTTGTCCTAGTGGTGGGGGAGACCGGCTCTGGAAAAACTACACAGATCCCACAGTTCCTCCTGGACGACTGCAGCCGAAATGGGATCCCCTGTCGGATCTTCTGCACACAGCCCCGGCGTCTGGCAGCCATCGCTGTGGCAGAGCGGGTTGCtgcggagagaggggagagcatcGGTCAGACCATTGGCTACCAGATCCGCCTGGAGAGCAGAGTTTCTCCTAAGACGCTGCTGACCTTCTGCACAAGCGGAGTCCTGCTGAGAACACTGATGGCCGGAGACACCACAATGTCCACTGTTACTCACGTCATTGTGGATGAGGTTCACGAGCGGGATGGTCTGAGTGACTTCCTGCTGACCAAGATGAGGGACATGCTCCAGACGATGCCTAATCTGAAGCTCATCCTGTCCAGTGCTGCCCTGGACGTGGAGCTGTTCCTCCGCTACTTTGGCTCCTGTCCTGTCATCCACATCAAAGGAAGACCATTTGAGGTGAAGCAACTTTTCCTGGAAGACATCTTGAGGACAACAGGCTATTCAAACAAAGACATGAGGAAATACAAAAAGGAGATCCAGAGGGAGGAAAAGCAACAGATGTCTTTGACAGAGTGGTGTAAAGTGCGTGAGGGTGGCTCCCGCCAGGAGCCCCAGAGGGAGAAGACCACCTCGGCCTCCTGTGTCCTTCAGGAGAACGACCTGCTGGACGATGGAGGGGACAGTGTTTTCACCCAGCTGAATGAGAAAGATGTGGCATCATTGGACCCGTGGCTGCTGAAGGAGATGGATGCCTGCATCTCAGACATCTTCCTCAACCAGGACGCTGACGCCTTCGTCCAGCTCTTCAATCTCATCCTGAGTGAGAACGTCAGCGTGGACTACATGCACAGTGAAACGAGCGCCACTCCACTCATGGTGGCAGCAGGTCGAGGCTTCCTCAGTCAGATTGAGCAGCTTTTGAGTATGGGAGCCAGCGTCAGAATCAAGGCCTCCAATGGCTGGACTGCGCTGGACTGGGCCAAGCACTTCCAGCAGGCAGAAGTGGTGGACCTACTAGAATCCTACCTCTCATCCCTGGAGGCGGGGAAGCTGGACGAGTGGTCCCTGGTGCAGGCTGCCACCACAGAAATGAGCCCGGAGGACCAGGAGCTGCTCAAGGAATACCACCACAGCTTTGACGATGAGAGGGTGGACCTGGACCTCATCATGCACCTGCTACACAACATTTGCACCAGCTCAGAAGACGGTGCGGTTTTGATCTTCCTCCCCGGATACGATGAGATAGTGGGTCTGAGGGACCGTATCCTGTACGACGATAAAAGATTCACAGACCACTCTCAAAGGTACCAGGTCTTTACACTCCACTCCAACATGCAGACCTCGGATCAGAAGAAAGTGCTGAGGAACACTCCAGCTGGTATCCGGAAAATAaTTCTCTCCACTAACATCGCAGAGACGAGTATCACTGTCAACGATGTCGTATTTGTCATTGACGCAGGAAAAGTAAAAGAGAAGTCCTTTGATGCCCTGAACCATGTGACCATGCTGAAGATGGTGTGGATCTCCAAGGCCAGCTCTCTGCAGAGGAAGGGCAGAGCTGGACGTTGCCGACCAGGGATCTGCTTCCACCTCTTCAGTCGTCTCCGCTTTAACAACATGCTGGAGTACCAGGTGCCCCAGCTACTGAGGATGCCTCTGCAGgaaCTCTGTCTCCACACCAAGCTGTTGGCCCCAATCACCTGTTCCATCGCTGAATTCCTGTCCAAAGCACCCGAACCACCCCCCATCCTCATTGTAAAAAACGCGGTGCAGATGCTCaagACCATAGACGCCATGGACCCGTGGGAGGACCTGACGGAGCTGGGCTACCACCTGGCTGACCTGCCTGTGGAGCCCCACCTGGGAAAGATGGTGTTATGTGCCGTGGTGCTCAAGTGCCTAGACCCCATCTTGACCATCGCCTGCACGCTGGCCCATCGCGACCCCTTTGTGCTGCCCTCCCAGGCCTCTCAGAAGAGGGCATCCATGCTGTGCCGGAAGCGCTTTACTGCAGGGACATTCAGCGACCATATGGCCCTGCTCCGAGCCTTCCAGGCTTGGCAGAAGGCCCGCACAGATGGCTGGGAAAGGTCCTTCTGTGAGAAGAACTTCCTGTCCCAGGCTACCATGGAGATCATCATAGGGATGAGGACCCAGCTGCTAGGACAGCTCCGAGCCATAGGCTTTGTGCGGGCACGGGGCGGCGGGGACATCCGTGATGTGAACCTGAACTCTGAGAACTGGTCAGTGGTGAAGGCAGCCCTGGTGGCCGGAATGTACCCCAACCTGATCCATGTGGACCGTGAGAGCTGTTCTCTGTCTGGGGCCAAGGAGAAGAGGGTCCGCTTCCACCCCACCTCCATCCTCAGCCAGCCACAGCCCCACAAGAAGATCCCCCCAGCCAATGGTCAGGTGGCAGCCGTCCAGTCCCTGCCCACCGATTGGTTGATCTATGACGAGATGACGCGAGCCCATAGGATAGCCAGCATCCGCTGCTGCTCTGTGGTCTCCCCCATAACCATAGCCATCTTCGGGGGCTGTGCCAAACTGCCCAGCACAGCCCTACAAGAACCTGCTGTTCAGAAAGATGATGTGGTGAATGAGAGCAGTGACAGTGAGATTGAGGATCGCTCCACAGCCAACCTGGCTCAGATGAAGATCGATGAGTGGCTCAACTTCAAACTGGACAAAGAGATGGTGGGTCTGGTGTTCCAGCTGAGGCAGAAGTGGCACGGTTTATTCCTGAGGAGGATCCGCTCCCCCTCCAAGCCCTGGTCCCAGCTGGATGAGGCCACCATACGGGCCCTGGTGTCGGTGCTGGGGGCTGAGGATCAGACTGCAGGGCTGCAGCAGCCCACAGGGATTGGCCAGAGGCCCCGGCCCATGTCCTCTGAGGAGCTCCCCCAGACCTCCTCCTGGAGGAACGCCAACAGCAGGAGAACCTCCGGCCCCACAGCCAGCCCTGACATCCCGGAGCTCCCTGACGAACCCCTCATCCCCGCCCCCTCACACACAGCCACAgacagGTCCTCAAGACTCTCCCCTGCCTCGGCCCTCCTGCACCCCAAAGCCCCCCATGGCAGCAGGGACAGGGGCTCCAGGCGCCCCACAGACGACCACTCCTCCACCCCCAAGTCTCCTGAATCGGCTTCACTCGGCttccccagcccctgtcccagcccctccCCCACCTCATCAGGAAAGTGCTCCAAGTCTCCGTCCCCGAGGCCAGGCGTTGCACTGGTGCGTTACTTCATCATGAAGAGCAGCAACCTGAGGAACATTGACATCTCCCAGCAGAAAGGAATCTGGTCCACCACACCCAGCAACGAGCTCAAACTCAACAGAGCCTTCCTGGAGAGCAGCCTTGTCTTCTTGGTCTTCTCTGTGCAGGGCTCCGGACacttccagGGCTATGCACGGATGACGTCGGTCATTGGACAGGAGCGCTGTCAGGACTGGGGCTCCACAGGGCTGGGGGGGGTCTTCAGTGTGGAGTGGACCAGGAAGGAGAGCCTGCCCTTCCAGTGTACCCACCAGCTGCTCAACCCCTGGAACGACAACAAGAAGGTGCAGATCAGCAGAGACGGACAGGAGTTGGAGCCTCAGGCTGGAGGCCAGCTGCTGCAGCTGTGGGAGAGACTCAGGGAAACCACagcaaccacaacagcaacatgaGCCATGAGAGATTGCACTGACCTTCAGGACCTCACCACTTGACTTGGCTATGTGTCATTATAACAGATCGAAGAAAGCATTATAACAGATCGAGGGCTAGTTTTATTTCCTAAATGTGTTTTGAACCACCTCCACACACACTTGTTTGTCAGTGGTCCACAACCAGTTACCCAATGTGTTTGTATTTGGCAAAAAAATAGATTTGTTACTGAGATTCATGTTCTGAAGTTGTTAACCTTTTCAGATGCTATAATGTTATGTTTAAGAATATCTAAGTGCAGAAAGCTGTGTTAACATGAAGTGACCTCACGAGAAAAGTTTTGTTTTTAATAttcatttcctggtgtttttttaAGCAAATTATAACTTTGATGACGAGACTGACATCTACGCTAATTCCCAGTGACTACAGTGAAATGTAATGATGATGATTGGGACATTCAGTGAGGaatcgtgtttttttttttttttcaatgctTCTCACAGCACATGAGTTGCATGTACCATAGCACTCCATGTGTTGAATGGTAACATGTTTGAATGTGTGTCACTGCACAAGGTCGCTCAGACTGGAGCAACCATAATGTAACCTTGTACTGTAGCTAAGCTGTGCCTGGTGAGACCTTACTAGAGGTCATGTCTTTCTCTGTCAATGaccaaaatgtttgtttttattcatttCAACGGATTTATGAtcttttgtaaatgtatttaaagaaaaaaataattacTTTTATCCAGTTTttggatatatttttttttatctctgttCATTTTAGCCCTGGTTCAGCAAGGGGTTAAATATTACGATTGACTGACAAGTCTCTTTTCGTTTGAGTTTTTTTTTATGGTTGTATTGTTGAAGTAGGAAATAGATATAAAGAATTTTTATCAATA

Function

NR:

description
probable ATP-dependent RNA helicase YTHDC2

GO: NA

KEGG:

id description
K20099 YTHDC2; ATP-dependent RNA helicase YTHDC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967431.1 True 5371 mRNA 0.53 32 23853359 23878838

Neighbor

gene id symbol gene type direction distance location
LOC110509835 spr coding downstream 90757 23760130 ~ 23762602 (-)
LOC110509834 LOC106563251 coding downstream 96533 23748089 ~ 23756826 (-)
LOC110509832 LOC106563254 coding downstream 153475 23669779 ~ 23699884 (-)
LOC110509827 LOC106563259 coding downstream 300561 23540883 ~ 23552798 (-)
LOC110509822 LOC106563264 coding downstream 592965 23193002 ~ 23260394 (-)
arrdc1b LOC106563241 coding upstream 248120 24126958 ~ 24195966 (-)
LOC110509846 NA coding upstream 322564 24201402 ~ 24207421 (-)
mamdc4 mamdc4 coding upstream 330555 24209393 ~ 24226530 (-)
phpt1 phpt1 coding upstream 348563 24227401 ~ 24231728 (-)
LOC110509849 enp2 coding upstream 352931 24231769 ~ 24286433 (-)
G2166866 NA non-coding downstream 29480 23820460 ~ 23823879 (-)
G2166867 LOC106563249 non-coding downstream 34063 23818497 ~ 23819296 (-)
G2166810 NA non-coding downstream 136638 23692385 ~ 23716721 (-)
G2166776 NA non-coding downstream 206308 23644690 ~ 23647051 (-)
G2167215 NA non-coding upstream 5196 23884034 ~ 23884338 (-)
G2167217 NA non-coding upstream 8236 23887074 ~ 23887376 (-)
G2167303 NA non-coding upstream 139248 24018086 ~ 24020111 (-)
G2167281 NA non-coding upstream 156975 24035813 ~ 24074872 (-)
G2167314 NA non-coding upstream 165618 24044456 ~ 24045610 (-)
G2163923 NA other downstream 2240398 21612563 ~ 21612961 (-)
G2163913 NA other downstream 2255864 21596551 ~ 21597495 (-)
rabepk rabepk other downstream 2707022 21138218 ~ 21146494 (-)
surf4 LOC106563281 other downstream 2876411 20970332 ~ 20978032 (-)
LOC110509347 LOC106565457 other upstream 522011 24400755 ~ 24407113 (-)
LOC110509858 LOC106563233 other upstream 651352 24530156 ~ 24537449 (-)
G2167965 LOC106563228 other upstream 968315 24847153 ~ 24869810 (-)
LOC110509868 LOC106563221 other upstream 1584553 25447869 ~ 25528834 (-)

Expression


Co-expression Network