LOC110509844 (LOC106563243)


Basic Information

Item Value
gene id LOC110509844
gene name LOC106563243
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 24059336 ~ 24118882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590983.2
TTGGCCGTCCCAAGGATACAGTATAGCAACGAAAGAGAGGGAACCCTTGCTTTGCACGCCTTTTAACTTCAGTACTCCCCTGGGAGTAGAGTAAACTCAGTTCAGTTACGCAGTGTGCACTGCTGTCACAGTAGACTTTTTACGACATTAACACCGCTGTCGTTTTTAGGCGCATATGTTGGATTTTAATGTCAGAAAACCAAGGCAAATTAATTTGTTTTTATCAAGCTTCAGTATAGTCCAGTAACGTTACATATAATTATTGCATCCGAGTTTATCGAATAAATACGATTTAGAAAGAAATGGAGGGGCTCTTCCACGAAGATTTGGCAGCCTTGTCAGATTTGGATGAACAAAGTTTGTTGGAATCCCTGAGTCAACGGTTCAAACAAGATCGCATCTATACCTACATTGGGGACATCTTGGTGGCCATAAATCCATTTAAATACCTCCCTCTCTATGTGAAAGAGGTGTCAGAGAGGTATAAGTACCATGAGAAGAGCAAGCTACCTCCTCATATATTCGCTGTGGCAGACAGAGCCTACCAGTCCATGATGGGAAGGTTAGCCACGGGACCCCGAAACCAATGCATTGTTATCAGTGGGGAGAGTGGAGCAGGGAAGACCGAGAGCACCAAGCTGCTGCTCAGACAGATCATGGAGCTGTGCAGAGCCAACTCACAGCTAGAGCAACAGATACTACAGGTGAATCCTCTGCTGGAGGCCTTTGGCAATGCCCAGACTGTGATGAATGACAACAGCAGTCGCTTCGGGAAGTACATTCAGCTGCGCTTCCACAACTCCtcagTAAAAGGAGCTAAGATCAACGAGTACCTCCTGGAGAAGTCTCGTGTGGTCCACCAGGATGAGGGCGAGAGAAACTTCCATATCTTCTACTGCATGCTGGCGGGCATCTCCCCGGAGGACAAAGACATGTATGGACTCCTGGACCCCACGCAGTACAGGTATCTGAATGGGCGGTACGGCTCTGAGGACATAGTGAGGAAATGGGGGGAGAAGTACAGTGAAGTGTGTAACGCAATGGACATGGTGGGATTTCAGGAACAGGAGAAGGTAGACATGATGACTATCCTGGCAGGGATCCTGTCTTTGGGAAACATCATGTTTGAGCCCACAGAGACCGACGTGCTCAGGGTCACTGGCAAGTCTATGGGCTGGCTCAAAGCCACAGCTGGTCAGTTTGGGGTGCAGGAGGAGGAGTTGCTGAGGAGTCTGACCTGTACTCTGTCTGTGACGAGAGGAGAAGCCATCCGCAGGCTGCACAACCAGCAGCAGGCCGAGGATGCCAGGGACTCCATTGCCAAAGTGGCTTATGGGAGAGTATTCGGCTGGATTGTCAGTAAAGTTAACGAACTGCTGGCTCCCAATGTTGACTTTGACGTTGAGCTGAATGAAATAGGTATCCTTGACATTTTCGGGTTTGAGAATTTTGCCGTGAACCGTTTTGAGCAGCTCTGCATCAACCTGGCCAATGAACAGCTGCAGTACTTCTTTAACCACCACATCTTTCTGATGGAGCAGAATGAATACAAGGAAGAGGGCATCGAGTGGGAGACGATCTCCTTCAAAGACAACAAGCCTATCCTGGACCTGATCCTTACTAAACCTATTGGCATACTTTCTCTCCTGGACGAGCAGAGTGCCTTTCCTCAGGCATCAGACAGAGACTTTGTGGACAAGTTGAACAGTAAATTTAAAAGCAGCCCCCACTATGAGGTGGTCCGGAGTCACAGCCCCCTCTTCACTGTGGTTCACTATGCTGGGAAGGtccagtataatggaggaggcttcctagagatgaacagagATACCATCCCAGCCAGCATCAGAGACCTCTTCATCAACAGTGTCACCCCTCTACTCAGTGTCCTTTTTGCcgCCACAATCTCCAGGACAGGGACCTTGATGCCACGCAAAGCAAAGGTCATGCAAAAGGCAGATGACAACTTTAACTCAACTAGGAAACAGTCAGTGGGGGCCCAGTTTAAGCACTCTCTAGCTGTGCTGATGGAGAAGATGTTTGTGGCCAATCCTCACTTTGTTCGCTGCATTAAACCTAACGGCAACAAGCTTCCTGACCAGGTGGACAACAAAAGGGTCATGGACCAGCTAAGATACAACGGCCTGCTGGAAACCATCAGGATACGAAGAGATGGCTTCTCCTGGCGACCCTCATTCAAAGAATTtgctcagagATATAACATTCTGCTGATCAAGCCAGATTTACCACTAACCAAGGAAAGCTGCTTGTCCATCCTCAACACTACTGCGATACATGGCTGGAAGTGTGGGTCGTCTCGTCTGTTCTTTAAGTACTGGCACCAGGAGGAGTTGTCCAGGCTGTTGGAGAGACTGGGCAAGGCAGCTCTTGTCATCCAGAAAAACTACCTCTCTCTGCGCTACAGGAGGAAGTACCTGTCCCTACTGTTGGAGGTGAGCAGACAGAGGCaggctcagagagagagggaggaggagctaGAGGAGGAGAACAAGAggccCGTCTCTCCACCCGTGCCCCTACCCAGGAGGAAGAAGCCTCAGCCCCGGCCTCGCTCCATCATGCCCACAGCTGCCCACCTGGCCCCTGTCCCCCGGCCCCGCAACAAACAGTTTGAGGCCACTCCCTTTGACAACCTGGAGGTGCACAGTGAACTGGCTGAGCTGATGGGCCAGGTGGGGGGAGAGGAGCGGGCCAGGGAGAGGAGCGGGCCAGGGAGAGGAGCGGGCCAGGGAGAGGAGCGGGCCAGGGAGAGGAGCAAGAAGAGAAGGGACAACATCCGCTGGTTCAGGGAGACGCAGGCCCGCAAGGTGGTCCGCAACGGTGCCTTCCCCTGCTGGTTCCATGGCATGATAACACGTAGACAAGCGGAGGATCTGATGACGGACAAGCCTGTAGGCTGCTTCCTGATTCGTGTAGGACAGAGCCGGGAGGGCTACACACTAACATACAAGGGGGCAAACCGCTGTAGGCACTACATGATTGAGATGCAGTCCAACGGGAAGTATGTGATCCTGGGGGAGGATAAAGCCCACCCCTCCCTGCCTGACCTGGTGCAGCACCACAGCCGGGTGGGCATCAAGCCCTTCAACGAGCTGCTCACCACCTCCTGTGGACAGACATGTGACCACAATACAGACTACGAGGACTTGAAGGGCCTGGATCACCTGGCCGTGGTTGACTGCAGGAGCACCGtgtctggggaagaggagggCGAGTTGAGCCCGGATCAGGTCCACCTGGAGTTCCAGCAGCTCTTCCTGCCTCCGGGGCAGAACCCCGCCCTGGAGGCCCAGAGACCCCCTGTCCTCAGGCGGATATCTGACCGCAGACACCGGGCCGAGGCTGAAGGAGGACCGGAGGCCCTGGGAGGGAAGctcagagatggggagagaggaagagcgtgGGGAGATGAGCGGGACCGCAAGAGCAGGCCCTTTCCCCGGTTGTATCCTTCCATCCGATTGGCTATGAGGGAGATCCAGCAGATCCAACAGCACTTTTCAGATgtccaggaacagagccccgccGTCTCTCACAGTACACCCAAGCCCTCCTGGAGGAGGACAGATTCATAACCCATGTGATGGAGGGAGTTCATTCAAAGCTGCTATTTGTTGTTTTTGCCCATCTGAATGAGTTAACTGTACCTTATTCTGTCAAGCGTTAACCAGGTTTTTATAAACAAATTGTAAGGAGATACTTCCTTGTTTTTACTAGTGTTTTATTTAGTCACAATTTTAATATAAATTTGTTTACGTTTCTGAATATTGTTTTATGTGTGTATGTAAATTATTCAGTGGGCATTTTACATTCACTGTTTTACTGaatgtgttttttacattttagatatCTGGTTgtgcaagttttttttttttttcttcataataATAAAATCTGCAGTCAAAAAAGCTTAGG

Function

NR:

description
myosin-IIIb-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590983.2 True 3936 mRNA 0.51 30 24059336 24118882

Neighbor

gene id symbol gene type direction distance location
LOC110509843 LOC106563244 coding upstream 13473 24042927 ~ 24045863 (+)
LOC110509842 LOC106563245 coding upstream 23559 23884122 ~ 24035777 (+)
LOC100301660 LOC106563362 coding upstream 206514 23851125 ~ 23852822 (+)
LOC110509839 fastkd5 coding upstream 231499 23824234 ~ 23827837 (+)
LOC110509838 lzts3 coding upstream 238202 23807094 ~ 23823864 (+)
LOC110509856 LOC100380649 coding downstream 291416 24410298 ~ 24432688 (+)
LOC110509859 LOC106563234 coding downstream 381479 24500361 ~ 24532163 (+)
LOC110509861 LOC106563232 coding downstream 459723 24578605 ~ 24591900 (+)
si:ch211-114l13.9 LOC106563229 coding downstream 514419 24633301 ~ 24642099 (+)
LOC110509863 NA coding downstream 628461 24747343 ~ 24751800 (+)
G2166891 NA non-coding upstream 22510 24035853 ~ 24036826 (+)
G2166897 NA non-coding upstream 172295 23886839 ~ 23887041 (+)
G2166889 NA non-coding upstream 179878 23879143 ~ 23879458 (+)
G2166500 LOC106563247 non-coding upstream 202055 23856377 ~ 23857281 (+)
G2166498 NA non-coding upstream 204739 23853570 ~ 23854597 (+)
G2167019 NA non-coding downstream 2048 24120930 ~ 24121175 (+)
G2167020 NA non-coding downstream 2460 24121342 ~ 24121653 (+)
G2167089 phpt1 non-coding downstream 108539 24227421 ~ 24231685 (+)
G2167096 NA non-coding downstream 119276 24238158 ~ 24238502 (+)
G2167128 LOC106563238 non-coding downstream 188518 24307400 ~ 24308710 (+)
LOC110509837 LOC106563250 other upstream 267672 23785060 ~ 23793640 (+)
LOC110509345 LOC106563260 other upstream 534005 23468400 ~ 23534217 (+)
G2165973 LOC106563265 other upstream 925046 23125780 ~ 23134290 (+)
G2165628 LOC106563266 other upstream 1217855 22837071 ~ 22841481 (+)
G2163804 LOC106613263 other upstream 2458284 21600418 ~ 21601052 (+)
LOC110509866 LOC106563223 other downstream 1080737 24944825 ~ 25202836 (+)
LOC110509876 LOC106563358 other downstream 2344419 26463263 ~ 26464615 (+)
LOC110509877 LOC106563217 other downstream 2410090 26504919 ~ 26532797 (+)
G2170458 LOC106563185 other downstream 3203223 27322105 ~ 27324765 (+)

Expression


Co-expression Network