LOC110509859 (LOC106563234)


Basic Information

Item Value
gene id LOC110509859
gene name LOC106563234
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 24500361 ~ 24532163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471493.2
ttttAGGAGATAGATTCCACAAAGCCTGGTCTCTGCTCCACTCCGTTGGTGAAGTCATCAGAAACGTCATTCACCAAGGAGTGGAGTTCAGTCCTCTACCCCTGTGAATGAACTCAGCTGGAGGCCCTCCTATGAGACAGTTCACAGACTTGGTCCGGCACGGGAATGGAGGTCCGGTGCAACACCAAGTCTTGCTTATTGCCGTGAACATCGCACACTACCTCCATCAAAGAAATACCACTTGTGCTAGAGGCCGAGATTCGGTGGTCCTCAGACCACGTGAGCGGCTCCAGGCCGCTGACCGGACTCAGTAGCTTTATCACCGGATCCCTCTTCACGACTGGCCCGAGTGCTGCCCAGGGATCATTCTCCCGTTCGGCTTCGTGGACCAGACCATGCATCCGCCCTCTCTTAGGTCAAGGAAAAGGAGACCAGAGTCCCAgactgacaggtatggcatatatCCGGAGAGGCCGTCTCACCGCTGCTGTGTTGGCCGGGGAAGCACACcggagagaagggggagtgggGGTGGTTCACTACCCCCCTGCAGACCGTGGAGAAGAATCCGCGGAACGAGAGGTCGTTGCAGAGCGGGAGGAGGCGCCGAGGGTCCTCTGTATAGGTAGAGCGCCGCTCCGGGGTCCAGGTTGGACATCAGGCTTTGGGGGTAGAAATAGGGCGACGGAAACATTCTCTGAAGAGCAGAGTAATTTCCAGCCTCCGCTAACAGTTCCAGTCCAACCGCTGTCTGCCTCTTCCACTTTGTTCTATTCGGACAAGAAACAGTAGATATTAGTAAGGGAACTCTTATCGTAAAGTTCTAAATAAGTTTGAAAAGTACAATTCAAATCTTTTTATTAAAGGATTCGGATCATATAGTTTAGAATTCAATCACATCTGCATgcgtaaaaaaaaacatatttgggGAAACCCCGTTGAAAATGCATGCACAAATAAGATATGTGGTTCAATTTCAACGAAATTAAATTGTTCTTACTGGATGTAGGCCTTCCTTGTTAGTAAAAACGTTAACAAAACATGTAGCATATTCTCTTACCACAAGGTACATTTTCTTTTCCATTGTGGGGTTTGAAATGCACATTTTAATTTCAGTCATTAAAGTTCAGTAAATTGGAAACATCTGTATTCAATGGGTGAATTTTCGGTTTGGGATTGTATTGGTGTCATCATGGCGTCGGAAATGTGTTTTCCACTATTTTTAAAATAAAGATTCAAAGTGTGGCTACTCTCA
>TU2477605
GGTGAAGTCATCAGAAACGTCATTCACCAAGGAGTGGAGTTCAGTCCTCTACCCCTGTGAATGAACTCAGCTGGAGGCCCTCCTATGAGACAGTTCACAGACTTGGTCCGGCACGGGAATGGAGGTCCGGTGCAACACCAAGTCTTGCTTATTGCCGTGAACATCGCACACTACCTCCATCAAAGAAATACCACTTGTGCTAGAGGCCGAGATTCGGTGGTCCTCAGACCACGTGAGCGGCTCCAGGCCGCTGACCGGACTCAGTAGCTTTATCACCGGATCCCTCTTCACGACTGGCCCGAGTGCTGCCCAGGGATCATTCTCCCGTTCGGCTTCGTGGACCAGACCATGCATCCGCCCTCTCTTAGGTCAAGGAAAAGGAGACCAGAGTCCCAgactgacaggtatggcatatatCCGGAGAGGCCGTCTCACCGCTGCTGTGTTGGCCGGGGAAGCACACcggagagaagggggagtgggGGTGGTTCACTACCCCCCTGCAGACCGTGGAGAAGAATCCGCGGAACGAGAGGTCGTTGCAGAGCGGGAGGAGGCGCCGAGGGTCCTCTGTATAGGTAGAGCGCCGCTCCGGGGTCCAGGTTGGACATCAGGCTTTGGGGGTAGAAATAGGGCGACGGAAACATTCTCTGAAGAGCAGAGTAATTTCCAGCCTCCGCTAACAGTTCCAGTCCAACCGCTGTCTGCCTCTTCCACTTTGTTCTATTCGGACAAGAAACAGTAGATATTAGTAAGGGAACTCTTATCGTAAAGTTCTAAATAAGTTTGAAAAGTACAATTCAAATCTTTTTATTAAAGGATTCGGATCATATAGTTTAGAATTCAATCACATCTGCATgcgtaaaaaaaaacatatttgggGAAACCCCGTTGAAAATGCATGCACAAATAAGATATGTGGTTCAATTTCAACGAAATTAAATTGTTCTTACTGGATGTAGGCCTTCCTTGTTAGTAAAAACGTTAACAAAACATGTAGCATATTCTCTTACCACAAGGTACATTTTCTTTTCCATTGTGGGGTTTGAAATGCACATTTTAATTTCAGTCATTAAAGTTCAGTAAATTGGAAACATCTGTATTCAATGGGTGAATTTTCGGTTTGGGATTGTATTGGTGTCATCATGGCGTCGGAAATGTGTTTTCCACTATTTTTAAAATAAAGATTCAAAGTGTGG

Function

NR:

description
PREDICTED: general transcription factor 3C polypeptide 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471493.2 False 1255 mRNA 0.47 4 24500361 24532163
TU2477605 True 1199 TUCP 0.47 4 24500408 24532154

Neighbor

gene id symbol gene type direction distance location
LOC110509856 LOC100380649 coding upstream 67673 24410298 ~ 24432688 (+)
LOC110509844 LOC106563243 coding upstream 381479 24059336 ~ 24118882 (+)
LOC110509843 LOC106563244 coding upstream 454498 24042927 ~ 24045863 (+)
LOC110509842 LOC106563245 coding upstream 464584 23884122 ~ 24035777 (+)
LOC100301660 LOC106563362 coding upstream 647539 23851125 ~ 23852822 (+)
LOC110509861 LOC106563232 coding downstream 46442 24578605 ~ 24591900 (+)
si:ch211-114l13.9 LOC106563229 coding downstream 101138 24633301 ~ 24642099 (+)
LOC110509863 NA coding downstream 215180 24747343 ~ 24751800 (+)
LOC110509348 LOC106563228 coding downstream 221382 24753545 ~ 24914892 (+)
LOC110509865 LOC106563226 coding downstream 394779 24926942 ~ 24938065 (+)
G2167603 NA non-coding upstream 113 24500007 ~ 24500248 (+)
G2167602 NA non-coding upstream 404 24499728 ~ 24499957 (+)
G2167599 NA non-coding upstream 5304 24492720 ~ 24495057 (+)
G2167594 NA non-coding upstream 12772 24487386 ~ 24487589 (+)
G2167587 NA non-coding upstream 23362 24476778 ~ 24476999 (+)
G2167634 NA non-coding downstream 6519 24538682 ~ 24539117 (+)
G2167635 NA non-coding downstream 7218 24539381 ~ 24539617 (+)
G2167637 NA non-coding downstream 8445 24540608 ~ 24540835 (+)
G2167638 NA non-coding downstream 8833 24540996 ~ 24541246 (+)
G2167649 NA non-coding downstream 28641 24560804 ~ 24561080 (+)
LOC110509837 LOC106563250 other upstream 708697 23785060 ~ 23793640 (+)
LOC110509345 LOC106563260 other upstream 975030 23468400 ~ 23534217 (+)
G2165973 LOC106563265 other upstream 1366071 23125780 ~ 23134290 (+)
G2165628 LOC106563266 other upstream 1658880 22837071 ~ 22841481 (+)
G2163804 LOC106613263 other upstream 2899309 21600418 ~ 21601052 (+)
LOC110509866 LOC106563223 other downstream 667456 24944825 ~ 25202836 (+)
LOC110509876 LOC106563358 other downstream 1931138 26463263 ~ 26464615 (+)
LOC110509877 LOC106563217 other downstream 1996809 26504919 ~ 26532797 (+)
G2170458 LOC106563185 other downstream 2789942 27322105 ~ 27324765 (+)
gigyf1b LOC105024601 other downstream 3771042 28277874 ~ 28313151 (+)

Expression


Co-expression Network