LOC110509872 (LOC106563219)


Basic Information

Item Value
gene id LOC110509872
gene name LOC106563219
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 25628220 ~ 25645833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591050.2
cagatagcatgGACCATAGTGGAAAAAGACCAGACGCGATAGCGCCATTTTGAACTGTCTGCGAATGGCTGGTGTTGGAAGGACTTGTCCGGGAGGGTGCGCGAGTGATTGAACAAGccgggagagggaggaaagaaagTCAAGCAGGAGGGTGGCCCGCAACGTCTGTCCCACTATATAGCGCCATCATTTGAGAAATACCGCTTGCACGAGTCCATACCCGGACATACAAGCCCGGGAATCGAGCGCGCGGCTAGAATCCCACTCGCCATGGCAGGAACTGGAGGTGGGAGCAATGACGTGCAGTGGTGCTTCTCTCAGGTGAAGGGTGCCATTGATGATGACGTGGCCGAAGCCGACATCATATCTACTGTGGAGTTCAACCACTCAGGAGAGCTGCTAGCCACAGGAGACAAGGGCGGCAGGGTCGTCATCTTTCAGCAGGAAATAGAGAATAAGAGTCAGCCACAGTGCCGCAGTGAGTACAATGTTTACAGCACTTTCCAGAGCCATGAGCCCGAGTTTGACTACTTGAAAAGTTTGGAGATTGAGGAGAAGATCAATAAAATCCGCTGGCTGCCCCAGAAGAACGCAGCTCAGTTCCTGTTGTCCACTAACGACAAAACTATAAAGTTGTGGAAGATCAGTGAACGAGACAAGCGACTGGAGGGTTACAACCTGAAAGAGGAGGATGGACGCTGCATCGACCCCAACACTGTCACTGCACTTCGGGTGCCCGTGTTTAGACCTATGGACCTTATGGTGGAGGCGAGCCCTCGAAGGGTGTTTGCCAACGCCCACACCTACCACATCAACTCCATCTCAATTAACAGTGACCATGAGACATATCTATCCGCAGATGACCTGCGCATCAACCTCTGGCACCAGGAGATCACTGACCGCAGCTTTAACATTGTGGATATAAAGCCAGTCAACATGGAGGAGCTGACAGAGGTGATCACAGCAGCTGAGTTCCATCCTAACCAGTGCAACACCTTTGTCtacagcagcagtaagggctccaTCCGCCTCTGTGACATGAGGGCATCAGCGCTATGTGACAAGCACTCCAAACTGTTCGAGGAGCCAGAGGACCCCAGTAACCGCTCCTTCTTCTCTGAGATAATTTCATCCATCTCGGATGTCAAGTTCAGCCACAACGGACGCTACATGATGACCAGAGACTACCTGTCTGTCAAGATCTGGGACCTGAACATGGAGACCAGGCCTGTGGAGACGTTCCAGGTTCACGAGTACCTCAGGAGTAAGCTGTGCTCGCTCTATGAGAACGACTGCATCTTTGACAAGTTTGAGTGCTGCTGGAATGGAAACGACAGTGTGGTGATGACAGGCTCGTACAACAACTTCTTCCGGATGTTTGACCGGGGCCAGCGGCGGGACGTGACCCTGGAGGCGTCCCGGGAGAGCAGTAAGCCACGGCAGGTCCTGAAGCCCCGCAAGGTGTGTGCCGGCGGGAAGCGGAAGAAGGACGAGATCAGTGTAGACAGCCTGGACTTCAACAAGAAAATCCTCCACACTGCCTGGCACCCCCAGGACAACATCATCGCTGTGGCAACCACCAACAACCTCTACATATTTCAGGACAAAGTGAACTAGATGTGTCCGTGAAGGCAGACATGACATCCACTACCTTCAGCCTCTCATTTTAGTCCAGGACAGTGATTGAGTGACAACAACGTcgcagtcaacaacaacaaaacctgTCATTGGACAAAACAGACTATGCCATGCTTCCAGGTGTGGAAAACTGAAACCTCATTCTTGCCCACCATCAGCCTCTGTGGCACAGTGACACGTCGCTCAACTTGTTATTGTTTCGGTGATGTTGTGCCAATCTGTGTGCCGCCCGCCAAGTATcgccccacccagcccagcccagcccagccccaggGCAACATGGGTAAAGAGCACCATTTTATTTGTATGTCTGACaagcacacttttttttttttttttttttttttttttgctgatggTTAGAAAAATCAAAACACACCTAGAACCATCCCTACCCCTGTTCAACTCCTCTCATTGTCTGGTGCCATAGTCATGTTTTTTTATTAGTCAACTGCCAagctgtttgttttttgtttttaattcaaTTGCAAGAACTggagtttttatttttgttcgtCTTCATAGTTGGAAAGGAAAAGGCACAATGCTTGCTCACCGTtaaatgatttgttttatttaagcaaggttaaaagattaacgtttCGGCCTTCATCATATCACATTTCTTCACTTGTGCACGCACAAACAATTCATGCATACACAAACCCAATAGGAAACAAACTCACACTTATTAAAGAGCCTCGCTGTCTCTCAAAGCTGTTGCTGCTGGTGGTGGACTGCTGCACCTCAGAGGAACACTTTAAAACATGTACTGACAGCATGTTGTATGTATGTAGTGTGACTGGTCCTTTCTGCACACACTACTAGATGCACAACCAGTCTGTCTGGCCCAGTGAGGACTCCTTGCTATTGCTGTGAGTGGACTAGCAGGCTAAGGCTTGGGAGAGAATTGACTGAGTCTGGGAACCAGAGTTCTTGCTGTGTCTTGTTgggtttttttctttcttttttcctgTTGACGGTTTTCTGTTGTCAAAGAAGTGCTATAGGTATCATACGTGATCTGTGTCATTGTACTCTATTAGTATAACGCAAATGACATATTGAAACGTTATAGATGTGTGTAGCGTTTTAAGCCGGCATTTCATGAACTGCCACCATAAATGGCTAGGTTCAAGGAAAATCCTGAATCTGAGTACCCATTACCATGATCTTGCTCGTCAAGCCTGTGTCTACACCAGTGAAATTTGAAGGTTGAAATCATGATGTTTGACAATAATTACAAATACAATCCAACTGTTGTAAATCTACAATGACAGGAATAaagtaaatacttttttttttttta

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591050.2 True 2947 mRNA 0.48 10 25628220 25645833
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509873 bnip3l coding downstream 361 25616189 ~ 25627859 (-)
LOC110509871 LOC106563220 coding downstream 21164 25584559 ~ 25607056 (-)
LOC110509868 LOC106563221 coding downstream 99386 25447869 ~ 25528834 (-)
LOC110509867 LOC106563222 coding downstream 265594 25304613 ~ 25362626 (-)
LOC110509864 wdr5 coding downstream 703091 24915017 ~ 24925129 (-)
LOC118945363 NA coding upstream 126246 25772079 ~ 25772925 (-)
LOC110509368 NA coding upstream 128156 25773989 ~ 25795306 (-)
LOC118945285 LOC106563359 coding upstream 794084 26439917 ~ 26444558 (-)
LOC110509349 NA coding upstream 804948 26450781 ~ 26454792 (-)
LOC118945277 NA coding upstream 902294 26548127 ~ 26556706 (-)
G2168855 NA non-coding downstream 50350 25577604 ~ 25577870 (-)
G2168815 NA non-coding downstream 140536 25487439 ~ 25487684 (-)
G2168813 LOC100194703 non-coding downstream 143732 25484237 ~ 25484488 (-)
G2168809 NA non-coding downstream 148904 25478849 ~ 25479316 (-)
G2168891 NA non-coding upstream 7755 25653588 ~ 25653787 (-)
G2168921 NA non-coding upstream 36960 25682793 ~ 25683011 (-)
G2169126 NA non-coding upstream 112509 25758342 ~ 25841105 (-)
G2169177 NA non-coding upstream 214430 25860263 ~ 25915383 (-)
G2169243 NA non-coding upstream 304709 25950542 ~ 25950773 (-)
G2167965 LOC106563228 other downstream 758410 24847153 ~ 24869810 (-)
LOC110509858 LOC106563233 other downstream 1095070 24530156 ~ 24537449 (-)
LOC110509347 LOC106565457 other downstream 1221177 24400755 ~ 24407113 (-)
G2169325 NA other upstream 360308 26006141 ~ 26006872 (-)
G2171272 NA other upstream 1548717 27193516 ~ 27196017 (-)
G2171531 NA other upstream 2112150 27757983 ~ 27760702 (-)
G2171619 NA other upstream 2289621 27935454 ~ 27936813 (-)
LOC110509923 LOC105024622 other upstream 2611213 28256809 ~ 28265547 (-)

Expression

LOC110509872(LOC106563219) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110509872(LOC106563219) Expression in each Bioproject

Bar chart with 21 bars.
LOC110509872(LOC106563219) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network