LOC110509881 (LOC106563214)


Basic Information

Item Value
gene id LOC110509881
gene name LOC106563214
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 26699773 ~ 26720454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591063.2
CAGGTCCAAAGAtcgctggctggagtgtttactcTAGCTCTGTGCCATTACCCTTAGGGGGATCCCGTTCTGTTTCCTGTAGCTGCCCATGACTTTGCCTCCCCCACCTCCTCACACCCCACCTCTGGGACTCCACCTGCTCTGCTCCACTCCTGCCTTCTACCTAGGAGTCTCAGGAGCCCCTCTGGGTCTGCGTCTTGGTGTAAGTGTGTTTGCCCAGACTGAAGCGCAGTTCCGTCTCCTGGATTTACTCTAGTTCAACTGAAAGGGAGGGTGTGTTGAGTGAGAGAAGCGGGTGTCATTGGAGACATCCTTAGGCCTACTTCCTGCCCGTCTTTGTTGTacctgtctgtgttctgttgaAGGACCTTGACTTTCCTGAGGGACTCCGATATCATTCTTCTCACAGGTGTGATATGGGAGTGATGAGCTGAACATGGGGTCGCTACTGTCACAATTGGGTCTGGAGTGTGGGAGGAAGGAAGTAAAAGAGGAAGAAAGACACCTGCGAGCAAATGACAGAGAATTCAACTTGTCTTACGAGTATGCTGACAATGCCATTAAAACCTCCAAATACAATATCTTCACCTTTCTCCCGCTCAATCTGTTTGAGCAGTTCCAAAGGCTGGCCAATGCctacttcctcttcctcctctgtctccagCTCATCCCAGAGATATCATCCCTGTCCTGGTTCACCACCGTGGTCCCCCTGGTCCTGGTGCTCTCCATGACCATGGCTAAGGATGGCAGCGACGACATAAACAGACACAGATGTGACAGACAGGTGAACAACCGGAAGGTGGAGGTCCTCATCGATGGAGAACTAAGGAGTGAAAAGTGGATGGATGTTCAAGTTGGGGACATCATCAAGCTGGAGAATAATCAGTTTGTCACGgCCGATCTCCTGTTGCTGTCCAGCAGTGAGCCTCTCAACCTCGTCTACATAGAAACAGCTGAACTAGATGGaGAAACTAACTTGAAGGTGAAGCAGGCCCTGACTGTAACAGGGGAACTGGAGGATTGCATAGAGAAACTGGCCAATTTCAACGGCGAGGTGCGCTGTGAGCCACCCAACAACCGCCTAGATAAGTTCACTGGCACCCTGACTCTGAAGGAAGAGATGTACTCCCTGGACAACGAGAAGGTCCTGCTGAGAGGCTGTACTCTGAGGAACACCCAGTGGTGCTTCGGCCTGGTCGTCTTTGGAGGTCCAGACACCAAGCTGATGCAGAACTGTGGAAAGACTACATTGAAACGGACCAGCATTGATCGCCTCATGAATGTTCTGGTGCTGAGTATCTTTGGTTTCCTGGCGGTTATGTGTTTAATCCTGGCTGTTGGGAATGGAATCTGGGAGTACCAGGAGGGCTCTAAATTTGCTGCATTCCTACCCAAGCAAGAGGGGGTTAACGCTCCCTTTTCAGCCTTCCTCACCTTCTGGTCCTACGTCATCATCCTCAACACTGTGGTGCCTATATCCCTCTATGTCAGTGTGGAGATCATTCGCCTGGGGAACAGTTTCTACATAGACTGGGACAGGAAGATGTACTATCCCAAAAGTGACACGCCTGCCGAGGCCAGGACCACCACGCTCAACGAGGAGCTGGGCCAGATCAAATACATCTTCTCTGACAAGACTGGAACACTCACACAGAACATCATGACCTTCAACAAGTGTTCCATCAACGGGAAGTCCTATGGGGAGTTGTTGGACTTTTCTGGACAAAGAGTGGAGATTAATGAGAAAACCGAGAAGGTGGACTTCTCTTGGAACAACCTGGCCGACCCAAAGTTCTGTTTCCATGACCACAGCCTAGTGGAGGTGGTGAGGGAGGGCAACCCCGAGGTGCAGGCCTTCTTCCGCCTGCTTGCGTTGTGCCACACCGTCATGCccgaggagaagaaggaggGTGAATTGTACTACCAGGCCCAGTCACCAGACGAGGGAGCTCTGGTCACAGCAGCCAGGAACTTTGGCTTTGTGTTCCGCTCTCGTACGCCAGAGAGCATCACTgtagtggagatgggagagctgGTCACCTACGAGCTGCTGGCTGTACTGGACTTCAACAACGTCCGCAAGAGGATGTCGGTCATCGTCCGCAGTCCGGAGGGCAAGCTGACTCTTTACTGTAAGGGAGCAGACACCATCATCTTTGAGAGACTGAACCCTTCTTGCAGCAAACTAAAGGAGGTCACCACCGAACACCTCAACGAGTATGCTGGGGATGGTCTGCGTACGCTGGCTCTGGCCTACAAGGACATAGACCCAAAGTATATGGAGGAGTGGAAACTGCGCCACCATGAGGCCAGCACTGCCATggacgagagggaggagaagttGGATGCGCTGTATGAGGAGATCGAGAAAGGCCTGCTGCTGTTAGGATCCACTGCAGTAGAGGATAAGCTACAGGATGGAGTGCCTCAGACCATTGAGCAGCTCTCCAAAGCCGACATCAAGATCTGGGTGCTCACTGGAGACAAGCAAGAAACGGCAGAGAACATTGGCTACTCCTGCAACATGTTGCGAGAGGAGATGACCGAAGTGTTCATCGTGTCGGCAAACACAGCAGAGGAAGTCAGAAAGGAGCTCCAGACCGCAAGGAGGAAGATGAGACCTGATGGACCAGAGGAGCCTACAGTCACGAAGAGTAGAAGTGGCCTGTTTTGTCTTTTAAAGACAGAGACGGTGGCAGATGAACCAGTGGATGGAGAGTACGCTATGGTGATTAACGGACACAGTCTGGCCTTTGCCCTGGAGAAGGACATGGAGATGGAGCTGCTGCGGACAGCGTGTATGTGTCAGACGGTGATCTGCTGCAGGGTGACTCCACTGCAGAAAGCCCAGGTGGTGGAGCTGGTGAAGAAGTACAAGCAGGCTATCACTCTGGCCATCGGCGACGGCGCCAACGACGTCAGCATGATCAAGGcTGCTCATATAGGAGTAGGTATATCAGGTCAGGAGGGAATGCAGGCGGTGCTCTCCAGTGACTTCTCCTTCGCTCAGTTCCGCTACCTGCAGCGCCTCCTGCTGGTGCACGGCCGCTGGTCCTACCTGAGGATGTGCAAATTCCTGCGTTACTTCTTCTACAAGAATTTCACCTTCACCTTCGTCCACTTCTGGTACGGCTTCTTCTGCGGTTTCTCAGCACAgACTGTGTATGACGAGTGGTTCATCACCCTGTATAACCTGGTTTACACAGCTCTACCTGTGCTGGCGTTGAGTCTCTTTGACCAGGATGTAAATGATCGGTGGAGTTTCCAGTACCCCAAGCTCTACGCCCCAGGCCAGCTCAACCAGTACTTCAGTAAGAGGGCCTTTGTctacacagtgttacacagtggCTACAGCTCCCTGGTCCTCTTCTTCATTCCCTGGGCAGCCATGTACGACACGGTCCGAGACGACGGCAAAGACATTGTGGACTATCAGTCCTTCGCCCTGCTGGCCCAGACCTGCCTGCTCATCGCCGTCAGTATACAGCTGGGTCTGGACACCCACTATTGGACATCAGTGAACCAGTTCTTCCTGTGGGGCAGTCTCTGTGTGTACTTTGCTGTCATATTCACCATGTACAGCAATGGCATGTTTCTCATCTTcacctcctccttccccttcATTGGCACAGCCAGGAACTCCCTGAACCAGCCCAATGTGTGGCTGACTATGCTACTCACCTCCATCCTCTGTGTGCTTCCCGTGGTGGCATATCGCTTCCTCCGCATCCTGCTGTGGCCCACTGTCAACGACAAGgtGAGGTACAAGGTGAGACAGGACAAGGTGTTACCCCCTGCACCTCGCCGTGTCCAAGCCCGCCGCGCCAGTACCCGCCGGTCAGGCTACGCCTTCTCCCACGCCCAGGGCTACGGTGACCTGGTGACCTCAGGCAGATTCCTGCGGTGGACCCCGAAGAGCCGGCCAGCCcttttctcccagacagactcGCCATTGGCCCAGACCCAGCATCAGTTCTACCGCACCATCAATGAGGGGGGGGAGCCACCACTGAGTCCCTAGGAGTGATGACCTAACAGAGCACATAGTGTTCTGGCCATTCAGTCTGAAAATCCTCAATCTATTCCTAAAAGAAATATCAAATGTCAAtcagccatgtttctgtgaaacactTCCACTGATGCGAGGATGTGTAATATTCTTCTGGATGAAAAGTACAAGGACAACCCCAAGCCTAAATTCAGCCAGGCTTAGTTTCAAGATGTATGTATGTGGAAGTACTGTACTTGTaactgtaaagaaaaaagtattggTGGTACAGCAACAAAATCATGCTCGGCATAAGTCCAAAATGATCATTATGGTACAATGGTCAGTGGCGGTTGGTGCCGTTTATGATTAGGGAGAATAATTTTTTTGggggccttatttctattacagcataatattggatgactgtcattcatattccattaacccagctcaatgtaacatctatAGGTTTAGGCTGCTACATCATACtctaattttccctatacccatcatgaggctgctacaacctagcctaggTGCACATGTCAAAATACAAAtgggagtaatcaaggtgacagacagtgcctgcatctagctgatctagggtgtaatcattagttcaAACCGTTGCAAACGAgaatttctattggacaaattcaggtaggtttattcccgttccgtttgcttctgttttaagatacgtttttcaacagaattagCAGAattaatacacccctgatcacccgCACACACAgatcactttcatagcagccacatacaaacagcatcatcactttgctcgttgtataaATCTTTCTCGCttctatgcgctctcctcctctcaccttttcccttcgcttgtggacttcagtgcacaacacaagtTGTCAGTGACCAGTCAAAacaaactttccaagccaaagcttcataccataaccactaaaccgcTTCACatagcctacatcgttgtcaccatattagcttacatcatagtcaacatagctactagaaataacgtgttagtaaacccgctacactcactcagtacagtgtacagcaagcagtttagcagttacaccggtgggccccGGTGACAATATAAAAAAAACGAAAGCTTACCTAGACTTGGAAGAGTttcagtgttggatagccttagccagctagctaacataagtaacattcctctctgtttgagccaggctAAATTAAATAGCTGCATTATCTAGCTAAGAAAGTGAACAAAATGCAGCTCTCTCTGCTACTTCCCCttattttttttagattttttattttttttaactgttcaactattgtctttctctttgagtcaactactcaccacattttatgcactacaGGGCTAGCTTATGTTTTCactactagattcattctctgatccatTGATTGGATgggcaacatgtcagttcatgttgcaagagctctgattggttggaggacgtcctccgtaAGCCATCATAATTACTGTGCAGGTCTTTGgtagggggtgagaaccatgagcctcctaggttttgtattgaagtcattgTAAACAGACGAGGatggaaaatagctgtcctccggTTACAACATGGTGCTACCCCAGAGTGtgttgttgaggctactgtagaccctcattgcaaaacagtgcaTTTTAATTtagtatatttagtatagttttatctaaaaaaatgATCACTTTTTTGATGTTTCACCCAAAAAAATtaaaatgaaattcactgaggaggatggtcatCCCCTGTTTTATTATAGCTTTAATGAATTGTAGTTATTATTGAGTTATTACTGTGTTATTATACAATTTAGTGAGACTAAAAGGGCCTTAAATAACTTAATTTGAAACTTTTATGCAAACCTTCTTTACATATTGTTCCACATACATTGTAGTGTCTGTACTCAGGGTGTTGCATTGAGTTATGATATATTATTATTTGAGTGCATTATGTTATGACTTTGCCTGATTTATGTTAGTATACCTTAGTAGACATATTTGTGTAATATTTGTTGGACCTACATAAAGATGTTATATTTTCTTCTCTCAATCATTGAAACACTAATCATAGACTCTCTGTGATTTGAATTATGTACCCTACTTTTTGAGCATTGTACTGCCATAATAAATGTTTGATATTTTTGTA

Function

NR:

description
phospholipid-transporting ATPase ID-like

GO: NA

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591063.2 True 6150 mRNA 0.48 28 26699773 26720454

Neighbor

gene id symbol gene type direction distance location
LOC110509879 LOC106563215 coding upstream 636 26569347 ~ 26699137 (+)
LOC110509878 LOC106563216 coding upstream 133047 26556804 ~ 26566726 (+)
LOC110509877 LOC106563217 coding upstream 166976 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 coding upstream 235158 26463263 ~ 26464615 (+)
LOC110509874 LOC106563218 coding upstream 435870 26123905 ~ 26263903 (+)
LOC110509880 LOC106563212 coding downstream 119 26720573 ~ 26730554 (+)
LOC110509887 LOC106563206 coding downstream 177496 26897950 ~ 26936831 (+)
LOC110509890 LOC106563202 coding downstream 299773 27020227 ~ 27056214 (+)
LOC110509891 drg1 coding downstream 336127 27056581 ~ 27072987 (+)
LOC110509893 LOC106563198 coding downstream 393032 27113486 ~ 27132244 (+)
G2170155 NA non-coding upstream 44271 26655298 ~ 26655502 (+)
G2170151 NA non-coding upstream 50249 26649303 ~ 26649524 (+)
G2170147 NA non-coding upstream 63206 26636348 ~ 26636567 (+)
G2170145 NA non-coding upstream 64622 26634875 ~ 26635151 (+)
G2170143 NA non-coding upstream 65588 26633972 ~ 26634185 (+)
G2170175 NA non-coding downstream 37841 26758295 ~ 26797557 (+)
G2170251 NA non-coding downstream 142702 26863156 ~ 26863436 (+)
G2170211 NA non-coding downstream 148170 26868624 ~ 26869912 (+)
G2170255 NA non-coding downstream 159428 26879882 ~ 26880168 (+)
G2170287 NA non-coding downstream 229706 26950160 ~ 26953340 (+)
LOC110509866 LOC106563223 other upstream 1497132 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2167619 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 2908109 23785060 ~ 23793640 (+)
G2170458 LOC106563185 other downstream 601651 27322105 ~ 27324765 (+)
gigyf1b LOC105024601 other downstream 1582751 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1958394 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2839116 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2865140 29585594 ~ 29587472 (+)

Expression


Co-expression Network