LOC110509880 (LOC106563212)


Basic Information

Item Value
gene id LOC110509880
gene name LOC106563212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 26720573 ~ 26730554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591062.2
TGGCTAGAGACGTTGTGACGCAAATATACCGCTGACCTGGTCTGGCCTCTGTTTCACCGGCACTGGAAGCGCGACGCACGGACAGTTGGAAAGAAGGAACCGACCTGCAGCAGTTGGGACTATTGGCAGTCACAATTTGCAATATAATAACCGATCGAAGCCTTCAAACTACCCGCAACACCGACCGTGTTTTCTTCAGAGAATGGAGACTCTTGCAGTAATAACATCACCTCATGAGCTGAGAGAATGAACAGGACGGCTAGCCTATCAAGGGATACCCTGATTGCGTGTCACTTCCCCCTGGTGCAGCTTCCCCCCTGGCAGCTTCCTGTGCAGGCAGCTCTGTGCAGTGGCTCTGCCAGCTCTGCCAAGCAGCCTGGTCGGCTGTGCTCCAGCTCCGTAGGTCTGACCCGTGCCGCCTCCCTCCCCGAGCAGGACAACCTCCACAGAGAGCCCTTCCACAGCAGCCTCAGACACATCTCCTCCAGCTACTGGAGCCTCAAGGAGGACCGGAgcgaggaggagggggatggggaggggggcaGCGATAGCAGTGGGAGGTGTGACTCTGGATCCTCACCAGAGGACGCGTCACAGATGACCATCTCCCAAAGACATAAAGAACACCCTATAGTTAAAGGTTCTTTACGGTCACACAACTCCTTCCTCCCGAATGAAGgggtggaagaagaggatgaggatAGTGATGGAGATAACTTGCACAGATACCACGAGGACCCTTTTTTTGTGCTGCAGCTGCATGGGAACTCTAACTGGGCCCTGAGTAATGCTGGGAGGCGGTTCTCCAAACCTTCtagccaatcagccagtcagcagAACAATGACAACAAGGGTAGTACTGTGTTGTTGGACTGTGGGGAGCAGAATAGAGTAGTGGATATTGAAGATAATATGTTCACATGTGGTAATGAGGGCTACTGCTTCAGCTATGGCCAACCAAAATGTTTCCCTGAGTCTTTCTCTGAGGGTCATTTAGAGTATGTCACAGACTCCTCCTGCAACAGCTCTGATGGGGTTCTCGTCAACTTCAGCGCCATCTACAACAAGAGTAACaaccctgccaccccaaatgaCCTCAGCTGCCCTGCAGTGCAGTCCTCCCAGCCAGTAGAGGGCTCTGTCTTCCTAAACCTGCACCCATTCTCCCAGGAGTCCCAGGGGCCTCAGGCTGCTGGACCCAGTCAGGGGAGCCGAACAACCTCCTCTCCTCATGACAGGGGGACTTCTGCCCCCTGCTGGTCACCGCAGGCGCTGGACTCCAACTGTAACATCTACCTTCCCGATGCCCAGagcctcctgtcctctctggaGGTCTCTGACCTCACTTCCTGTTTCCAGAGCCAGGCCAGGCTGCTGCCCACAGGGACCACCCAGAAGTACTACAAGCTGGTGACTTGTGACCTCTCATCCCAGTCAGCCTCGCCTAGCCCGGCCTTGTCCAGCACCACCAGTGTCACTTCAGAGGGCCACTACGTCCTCTTCAATAAGGCCCGGGGAGATCAGGGCCGGGGGAACAAACAGGAGGAAGAAGGATCAGACAAAGAAGGGGGGAGAGCTGCCCCATTGCACCGTCCTCGCTGTATGAGCTGGGACTCCCAACATGTCACCTCCTTCGCTGAGATTGCACACTGtaagagacatacagacagctGTCAGAGCTCAAGCCACTCCCACACCTCTCAGGACCTGTGTCCCATCCAGGAGGCAGTTTCCCTGGGCCAGAATAGCAGCCACTCCCCCCTACTCCTGAGTCCCAACCAAGGCAGTAGCACTGTGTCCAACCACCCTTCTGTGTCACCAGACCATGAGGCGGAGGAGGAGGGGGCGTGTTCATGGGCAACTCCTGTGGTGCGGTACAGTAAGGCTCAGAGGCCCAGCTCCCTGCCCATCCAGCCCTTTGACCTGCTTCCCCCAGCAGGTAAACCTCAGAGCCAGCCCCTGGGCTCCCTGCTGGACCAGTACATCAGCCACAAGAACACCAAGCCCAGCTCCCAGCCAGGGTTCAAGTGCAAAGGCAACAGACTCCTGACCCACCTGCGTCCTTCACCGCTGGGCAGCTATGGAGCCATCCTCCTGGAGGGACCCTCTAGCTCTGATACCTGCTCCACCTGCACCCCCAGTCCAGAACACTTCCACTCCAAATGCAACTGGACACACTCCAGTCCCTACAGTAGCCATGGCTGTACttttaccagtccaaaacaagcTCACATAAGCACAATACAATCTAATACCGAACTAACCCAGGTTCATTCATGCCAGGACCAGCTCTTTGCAGACCTAGACCAAAGCTATCCCAGCCCAGGTCAGGCCCACAGTAGCCCAAACCAGTCTCAATGTAAAGATTCAACCAAACGTAGCCAAGGTATGGCTCAGATCTGCCAAGATCTCATTCGCCGGTTTCCAGAGCAGCAGAGCCCCAGACCAGTCCTCCTGACCCACAGCCCTGACTTCCCCATTGACTCCCATGTAGCAACCATGTCCTCCTCTGCCAGTCACACCCCTCATCCAGACCTGCTGGTGTCCTTCTCTCCAGACACACCCTTACCGCCCCAGAAGAGAACCCCACTAACCTCAATACCTAAGGCTGGGTCTGCAGCTTCTCACTATAGTCTGACAGCTGCTCTCTCCTCAGTGGCCCATATGTCCTCTCAGAGCACCCTCCTGCAGCCCCTGGTGTTAGCAGGGCCCAGTGTGAAGCAGCATCAACAACAGCACTGCGACTCCTTCAGCCTGAGTGACAGTTGGCCACCTGTGGAGTTCTGCCTGTCACCTGAAGCCTCCTACGAGTCTCTGTCCATCAGCCATCtgcagaggagagGTCTGCTGAAATCTGTGAGCTTGGCAGTGGATTTGATCATGGCTCATTTTGGGACCAGTCGAGATCCTGGGGAAAAGATGTGGCTAGGTACCACCATTGGTGGTCTTGTTCTGGAGCATCTGTGTCCCACCATCCAGAACATTCTGCAGGATGGTCTCAGGGACCACAAACTGGACCTGATCATCGGTCAGCGACGCAACCATGCCTGGAACGTGGTGGAGGCCTCCACTCACACAGGCCCTACCACCCGGGTGCTCCACAGCTTGCTGTCCAAGGTGAGGCAGTGCTCCCTGCTGACCAGCCACTGTATGAAACTACGAGCCTTCATCATGGGCCTGCTCAACCTGAGGACCTTGGAATTCTGGCTGAATCACCTCTACAACCAAAAAGAGGTGGTGAAAGATCACTACCATCCATGGGGTTTCCTCGCCATGTCGCAGGGGCAGTGTCAGCCTCTGTTCCAGgagctcctcctcctgctgcagcCTCTCTCCATGTTACCCTTTGATCTCAACCTGCTGCTGGAGCCCCGCCTGCTACACAACAGACAGCTCTGCTCTGAGGAACAATCTCCACTGttgaaaggagacagagaagacagacaggGGGCGTATAGCTCTATGGATGGACCCAGGGAAAACAGCAGGCCAACAGGTGAACCACACCAGCTGGTACAGCATCTTCAGGGGTCCTCGCAGGTTTCAAAGGCCATGGGTCAGGAGAAGAGGGTGAGGCCTGTAGGTGAGTCTAGTAGGAGCCTGTGGTCAGCCGCTATTCCAGGGTGTTGGCAGAGACAACCTTCCCACGCAGAGAGGGGGGAATGTGGACAGATTTACAAGCATGTCATCCACCCTGAGCCTCAGcagaggatggaggggaggagagaagaggtgacttcacaggagggcaggagggagggaaggggtccAGAGACCCCCAGGATGACGGCAGACTTCCAGGATGATAACCCTTCCCAGGGTGGGCTACGCTGGGCCAAGCTCTTTGGATCAGGAAGGGACCACCCTGCCAGGACACAGAGGGCACCCCAAAACCCCAATGGGACACAGACCAAGAAAAGGAGACCTTCACAGTGGCTGCAGTTGGACAGTTCTCAGCTGGGCCTATTGGCCCATACAGTATGGTCAGGGAAACAGCCTGACCGGAAACACCAAACATAGACCTAGTGCCCCAGGAGAAGAAAAGATACACTACCAAAAATGTCAACTGCATGATCCTGAGTCAGTCTTATAGTGCAAAGTGTTGCACACAGACACCTCAGCTAGAACACACGCACACTGGTCAGAAAAGCACAGTAGACCATTTGTTGTTGTCTGAGCATGGGTGATACATTTACCCAAATGTCATTTTAAGGCAATAACAACTCTACGATGTTTAGTTATATTTACAAGTGCTTCTGTTCATCTGTCATGAATTGGGATTCATGCAATAGATTCTCCCTGTGCACCTGTCAATCAAACTGTGGTCAGTGAGAGGCTCCACCTATGCTACAGTCTTGCCTTAGGATCTGAAAGCCTTGTGGACCATTCCAGACTCTCCATAAGAAACCAATTAGTATTTAATGGAGCTGCATGCATACCATACAGTAGCATCCTATTATCCTAATAGTATCCATCTGTCCTCTACCTTCCAACCCTATGCCCTGTCTATTCTATGTGCGAATGgaatgtcaacaaaaaaaaaatgcagaaagGCAATCTTTACTAGCCATGTTAACTAGTGCCAAATATTATGCCACTCAGCAGCCTTGTACAGTGGCTTATCTTCCAAAATGAGGTTGCCTTCATATTCAACTAGACAAAGTCAATACATGTTTGTGAGGTAATCCAGACTAGCAAGGTAAGATTTCTGTGCATGTGTATAAAAAATGATATATGTACGTTCAAGGAGTCATTAGGTGCTAATTTAATCCTACTACTTTGTGTGGTTCTTCTACCTACATCAATATCctaatatattgttttttatgAGAGAGAAGTAGTTTTGTAAATATTTAGGTAATCAAATTCTAGAATTGTGGAACCGTTAGTCTCCAAATCGAGTGTGTTGTTTTCACAATATTAAGCTATCATGGTGTGTTTCAGGTGTACACTGTTTTGATAGGCCAGTAGTTCTAAGCTAAGGAGTAAAATCAAGTTTGAAATTGCGTGACAGGAATGACTTGGTTATTATAACCTCTGCAATAATGTGAAGGTGAGTTTATCAAACCCCTCTCATCTTTCCTCCCCAACCTAACTGTACTTAACCCTACAACCTTAGAAGAATGCACCCTCTGAGTGGAAGTTCCTTGTGACAATCAACCTTTGCAAATAAAGATAAATCAATAAGTTA

Function

NR:

description
iporin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591062.2 True 5191 mRNA 0.52 10 26720573 26730554

Neighbor

gene id symbol gene type direction distance location
LOC110509881 LOC106563214 coding upstream 119 26699773 ~ 26720454 (+)
LOC110509879 LOC106563215 coding upstream 21436 26569347 ~ 26699137 (+)
LOC110509878 LOC106563216 coding upstream 153847 26556804 ~ 26566726 (+)
LOC110509877 LOC106563217 coding upstream 187776 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 coding upstream 255958 26463263 ~ 26464615 (+)
LOC110509887 LOC106563206 coding downstream 167396 26897950 ~ 26936831 (+)
LOC110509890 LOC106563202 coding downstream 289673 27020227 ~ 27056214 (+)
LOC110509891 drg1 coding downstream 326027 27056581 ~ 27072987 (+)
LOC110509893 LOC106563198 coding downstream 382932 27113486 ~ 27132244 (+)
LOC110509895 fam136a coding downstream 414790 27145344 ~ 27147704 (+)
G2170155 NA non-coding upstream 65071 26655298 ~ 26655502 (+)
G2170151 NA non-coding upstream 71049 26649303 ~ 26649524 (+)
G2170147 NA non-coding upstream 84006 26636348 ~ 26636567 (+)
G2170145 NA non-coding upstream 85422 26634875 ~ 26635151 (+)
G2170143 NA non-coding upstream 86388 26633972 ~ 26634185 (+)
G2170175 NA non-coding downstream 27741 26758295 ~ 26797557 (+)
G2170251 NA non-coding downstream 132602 26863156 ~ 26863436 (+)
G2170211 NA non-coding downstream 138070 26868624 ~ 26869912 (+)
G2170255 NA non-coding downstream 149328 26879882 ~ 26880168 (+)
G2170287 NA non-coding downstream 219606 26950160 ~ 26953340 (+)
LOC110509866 LOC106563223 other upstream 1517932 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2188419 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 2928909 23785060 ~ 23793640 (+)
G2170458 LOC106563185 other downstream 591551 27322105 ~ 27324765 (+)
gigyf1b LOC105024601 other downstream 1572651 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1948294 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2829016 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2855040 29585594 ~ 29587472 (+)

Expression


Co-expression Network