LOC110509887 (LOC106563206)


Basic Information

Item Value
gene id LOC110509887
gene name LOC106563206
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 26897950 ~ 26936831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591070.2
TTTCCATTGCACTTCAGTGCACACAAATTACTCGTAAAATCTTTCTAGCAAGGGCGATATTGCGCGTGCACGCGACTGGCTTGCCATAGAAAACAAAGCTGTCTGCGCGGCATCCATTACAGCGGAGGGTGCAGACTACGGGAATATATGAATATAGACGCTAGGAAACACTCCTAAATATGGATTTTCAGCGAGTATAGGATCATTTGAGACTCGGGCCTGTAAGGGCAGTGAGACTGCAGGACACTCGCGAAACTGACGAAATATACAGTTTTTCTCGGggtgctttgtcttggccagctAGCAAACCATCATTGTCATTCGATTGGAAGCTATTCTATTAGTGTTTGCTAGATGGGGGCTGGGGTACATCGCCATGTTGTTATCAAATAGTAACTGTTAAAAAATACATCTTGAAGTAAAGGCGGAAATTTTGTCCACCAGGTCCTTCGTTTTGGCCACAGGGAACCGAATCTCAACAGTCGCGGAACCCACCACTGACTGTTGTCGTCGGTGACATGGCGGAGCAAGGCTACTCTTCTTGGGCGTACTCACTCGTCGACTCCAGCCAGGTGTCCACTTTCCTCATCTCCATCCTCCTCATTGTCTATGGCAGCTTCAGATCGTTGAACATGGACTGTGAGAACCAGGAGAAGGATAAGGATGGTAACCCTGTCCCAAATGGGGCCTTCAACAATGGCAACACAAACAACAGTATTCAAACCATAGACTCCACGCAGGCTCTGTTCCTGCCCATAGGAGCCTCCGTGTCTCTGCTCGTCATGTTCTTTTTCTTCGACTCTGTCCAGGTGGTTTTCACCATTTGCACTGCAGTTCTTGCGACAATTGCGTTTGCATTCCTCCTGTTGCCAATGTGCCAGTACTTGACCAGACCCTGCTCCCCACAAAACAAGATCTCGTTTGGCTGCTGTGGGCGCTTCACTCTGGCCGAGCTCCtcgccttctccctctctgtcatgctGGTGCTGATTTGGGTGCTGACGGGACACTGGCTGCTCATGGATGcTCTAGCCATGGGGTTGTGTGTGGCCATGATAGCGTTTGTGCGGCTGCCCAGTCTGAAGGTGTCTTGCCTGCTGCTGTCAGGGCTGCTCATCTATGACGTGTTCTGGGTGTTCTTCTCGGCCTATATCTTCAACAGCAACGTGATGGTGAAGGTGGCCACCCAACCGGCTGACAACCCCTTAGACGTGCTCTCCAGAAAGCTCCACCTGGGCCCTGGGATGGGCCGTGACGTCCCACGCTTGTCCCTGCCTGGCAAGCTGGTTTTCCCCAGttccACAGGCAGTCACTTCTCCATGCTGGGGATCGGGGACATAGTGATGCCGGGGCTACTGCTGTGCTTTGTGCTGCGCTACGACAACTACAAGAAGCAGGCCAACGGGGAGGCGGGGGGGCCAGGCACACCCGGGCGCATGGGGCGCGTCTCCTACTTCCACTGCACTCTCATCGGATACTTTGTGGGCCTGCTGACTGCCACTGTGGCCTCCAGGATCCACCGTGCGGCTCAGCCTGCCCTGCTCTACCTGGTGCCCTTCACCCTGCTGCCTCTACTCACCATGGCCTACCTGAAGGGAGACCTGCGGCGTATGTGGTCAGAGCCTTTCCACACGAAGGCCAGCAGCTCCCGCTTCCTGGAGGTATGATGCACCCTGGGAACACACAGCCAGCGTGGGCAGGACCAGGGACACCTACCCCCTGCcctgagagaaagggagtgaaagGGAGAGCGCACACTGAAGAGAGGCCTCGTCCTCATCACTAGTTCATTCTTTCCACCCATCCTCTGAGCAGCAGACCTCACATATGGACACCAGTGTATGGACCTCATTGCCAGACACAACTCCTCATTGCTtcctgttttcctctctctctttcctactttTCCTTCCCTCATCCACCTCCCTTGCCATGGCTCATTTCATTTTGTcaggcctctccctctctccttttgctCTTGGTCTTTCTGTTTTACTACCGCCCCTCTCATCTGTGTATCTCCCCGACTCTGCTGGACTCCAAGGCCAGGCGTCCCCCTATATGGACTACTGGGTGTGGGATGTGACTGAGGCTTTTTTTAGCATCTTCATTacaattattgttattattctGGAATGATTTGGAATGAACTgcggaggaggataggagagtaGGCAGAACTGCTGCTGCCACTAGGCAGGAAAATGACATCCGTGCACAGGACCAGCAGCctatcggagagagagagagaaggaacagcAACGGTTCATCAGTCGCTCCCTCCATCTgtttctctgtcctccatctaCCCCCTCTGTCCCCTGAACACCTCTCCTCTTTATCCTCaacatcctccccctctctaacAAACTCCCACCTTCCGTCATTCGCTGCCCCATTCCAGATACAGGTAttttatttagaaaatattttatTCTTGGCATATACAGAAATGATGCATTATAAATTGTGAATGTGTCCCTACTATTGCGGGGGGAAGCATCTCTctttgtatatatatgtgtacacAAGTATTTGGGTATCAtgttgtgtgactgtgtgtgtgtgagcgagagcgCATAGTATGTGAGACTGTGTTATTTCATTATTATGAACAATTTAATTATGTTTTGGATCCAGGACAGGTATAAAAGACCTTGACAATGAGAACTTGTGGAGTGACATTTGGGGGTTGATGGGACATGGGCAGGTCTGACTTGGACCACAGCTCGGTTCTGTAAGGCTAGGAGTGGTTTACTTGTGAACAAATTTCCTCCAAGTGACAGAATGGACATTGGGAAAAACCAAGTTAACCCTCCACTTGCCGTTGGCTGTacctggaggtgtgtgtgtgtgtgtgtgtgtgtgcgcctggtCGTTTAGAATAACCTCTATAAAGTCTGTAATGGACCTTGAGGGAGGAAATCTCTATGCCCTTCTGAGGGATTTATCTTAATAAAGGATTGTAATCAATGGACCCTGAGGTTAAAACTAACCCATAGCTAGGTTTTTACTGTCAAAGGTTGGGTATCCCAACGGTTTTTGGATTGTCATTCCTCTCACAGTTTTGTGGTGTTTGTCAGTTAGATCAGCCCCCACCCAAACCTCACAGGTGCATGTTTTGATTTTGTTCCCCtagcacaacacagctgattttaaatcatcaaagcttgatgatgagttggttattagAATCAGCtctagtgctagggcaaaaaccaaaatgtgcacccagagGGGCCCCAGGACAAACTTTGGAAATCCTGAGTTAGATCATAGCTTAAACAATACTGgaattaaagtgtgtgtgtgaaagtgtttgTGAAAGCGAGACAGTCGGACGAAGAGAGAGACTTGAATGGAAAATGCAGTTTACTGGCTTCCTGTCTTGAGTTTTcttttttacctgttttttaTGTTTGTTCTCTGGCCTTGCATGTCAAGTGTACAGTGTGTGTCATTCCTCAGACTGCAACAACAGACTGCTGGCCCCAACCAATGCACTAAGCTTTGCCAGCAAGGCTGCAGAGAGGAAAGTTACATGGACAAAGGCCAGGGAGTCGGGAGGACTGAACAGTTCTGACTAAACAGGCCACCTGGCTGataattgttgttttgttttttttattattattttttttacacttaGCCCCGATTTCACTCTAGCTGATCATTACCTGGACATTGTCTGGCTATGGGACAGACCACTGTCGGACAGCCTGAACATAAATGGACATGTAACCACAACCCCATTCCTGTCCCCTCTGCCTCTTTATGGACTTGGCAAAGAAAACTGATGATGATCATAGTGATGAAtaattgaagaagaaaaaaaatacagatgttTTCATTTTTTATGGAAGATGGCTTTCTATTTATCTCCTTGTTTGACTTTTTTTTCTTAGTGCTGTAGCTTTAGGTTTTCCATCTTATACTTTTCTTTCCTCCCTTGCAGCAGAGGGCTTTATAGCTGAAATGGAttctatcatttttttttaaaaagttgaATAAATTTAAGAGCTGTTTAGTGAAACATGAATCCTAATGAGCTGAATCTAAAACATTGTGTCTCCTTTAAccccctctctgctccctgttcctctcccccctttccctccATTCAGTCAGGATTCTGCTGTAAATAAAACATAATTCTAACTATA
>XM_021591069.2
TCCATTGCACTTCAGTGCACACAAATTACTCGTAAAATCTTTCTAGCAAGGGCGATATTGCGCGTGCACGCGACTGGCTTGCCATAGAAAACAAAGCTGTCTGCGCGGCATCCATTACAGCGGAGGGTGCAGACTACGGGAATATATGAATATAGACGCTAGGAAACACTCCTAAATATGGATTTTCAGCGAGTATAGGATCATTTGAGACTCGGGCCTGTAAGGGCAGTGAGACTGCAGGACACTCGCGAAACTGACGAAATATACAGTTTTTCTCGGggtgctttgtcttggccagctAGCAAACCATCATTGTCATTCGATTGGAAGCTATTCTATTAGTGTTTGCTAGATGGGGGCTGGGGTACATCGCCATGTTGTTATCAAATAGTAACTGTTAAAAAATACATCTTGAAGTAAAGGCGGAAATTTTGTCCACCAGGTCCTTCGTTTTGGCCACAGGGAACCGAATCTCAACAGTCGCGGAACCCACCACTGACTGTTGTCGTCGGTGACATGGCGGAGCAAGGCTACTCTTCTTGGGCGTACTCACTCGTCGACTCCAGCCAGGTGTCCACTTTCCTCATCTCCATCCTCCTCATTGTCTATGGCAGCTTCAGATCGTTGAACATGGACTGTGAGAACCAGGAGAAGGATAAGGATGGTAACCCTGTCCCAAATGGGGCCTTCAACAATGGCAACACAAACAACAGTGAGTCTCACATATTTGGTATTCAAACCATAGACTCCACGCAGGCTCTGTTCCTGCCCATAGGAGCCTCCGTGTCTCTGCTCGTCATGTTCTTTTTCTTCGACTCTGTCCAGGTGGTTTTCACCATTTGCACTGCAGTTCTTGCGACAATTGCGTTTGCATTCCTCCTGTTGCCAATGTGCCAGTACTTGACCAGACCCTGCTCCCCACAAAACAAGATCTCGTTTGGCTGCTGTGGGCGCTTCACTCTGGCCGAGCTCCtcgccttctccctctctgtcatgctGGTGCTGATTTGGGTGCTGACGGGACACTGGCTGCTCATGGATGcTCTAGCCATGGGGTTGTGTGTGGCCATGATAGCGTTTGTGCGGCTGCCCAGTCTGAAGGTGTCTTGCCTGCTGCTGTCAGGGCTGCTCATCTATGACGTGTTCTGGGTGTTCTTCTCGGCCTATATCTTCAACAGCAACGTGATGGTGAAGGTGGCCACCCAACCGGCTGACAACCCCTTAGACGTGCTCTCCAGAAAGCTCCACCTGGGCCCTGGGATGGGCCGTGACGTCCCACGCTTGTCCCTGCCTGGCAAGCTGGTTTTCCCCAGttccACAGGCAGTCACTTCTCCATGCTGGGGATCGGGGACATAGTGATGCCGGGGCTACTGCTGTGCTTTGTGCTGCGCTACGACAACTACAAGAAGCAGGCCAACGGGGAGGCGGGGGGGCCAGGCACACCCGGGCGCATGGGGCGCGTCTCCTACTTCCACTGCACTCTCATCGGATACTTTGTGGGCCTGCTGACTGCCACTGTGGCCTCCAGGATCCACCGTGCGGCTCAGCCTGCCCTGCTCTACCTGGTGCCCTTCACCCTGCTGCCTCTACTCACCATGGCCTACCTGAAGGGAGACCTGCGGCGTATGTGGTCAGAGCCTTTCCACACGAAGGCCAGCAGCTCCCGCTTCCTGGAGGTATGATGCACCCTGGGAACACACAGCCAGCGTGGGCAGGACCAGGGACACCTACCCCCTGCcctgagagaaagggagtgaaagGGAGAGCGCACACTGAAGAGAGGCCTCGTCCTCATCACTAGTTCATTCTTTCCACCCATCCTCTGAGCAGCAGACCTCACATATGGACACCAGTGTATGGACCTCATTGCCAGACACAACTCCTCATTGCTtcctgttttcctctctctctttcctactttTCCTTCCCTCATCCACCTCCCTTGCCATGGCTCATTTCATTTTGTcaggcctctccctctctccttttgctCTTGGTCTTTCTGTTTTACTACCGCCCCTCTCATCTGTGTATCTCCCCGACTCTGCTGGACTCCAAGGCCAGGCGTCCCCCTATATGGACTACTGGGTGTGGGATGTGACTGAGGCTTTTTTTAGCATCTTCATTacaattattgttattattctGGAATGATTTGGAATGAACTgcggaggaggataggagagtaGGCAGAACTGCTGCTGCCACTAGGCAGGAAAATGACATCCGTGCACAGGACCAGCAGCctatcggagagagagagagaaggaacagcAACGGTTCATCAGTCGCTCCCTCCATCTgtttctctgtcctccatctaCCCCCTCTGTCCCCTGAACACCTCTCCTCTTTATCCTCaacatcctccccctctctaacAAACTCCCACCTTCCGTCATTCGCTGCCCCATTCCAGATACAGGTAttttatttagaaaatattttatTCTTGGCATATACAGAAATGATGCATTATAAATTGTGAATGTGTCCCTACTATTGCGGGGGGAAGCATCTCTctttgtatatatatgtgtacacAAGTATTTGGGTATCAtgttgtgtgactgtgtgtgtgtgagcgagagcgCATAGTATGTGAGACTGTGTTATTTCATTATTATGAACAATTTAATTATGTTTTGGATCCAGGACAGGTATAAAAGACCTTGACAATGAGAACTTGTGGAGTGACATTTGGGGGTTGATGGGACATGGGCAGGTCTGACTTGGACCACAGCTCGGTTCTGTAAGGCTAGGAGTGGTTTACTTGTGAACAAATTTCCTCCAAGTGACAGAATGGACATTGGGAAAAACCAAGTTAACCCTCCACTTGCCGTTGGCTGTacctggaggtgtgtgtgtgtgtgtgtgtgtgtgcgcctggtCGTTTAGAATAACCTCTATAAAGTCTGTAATGGACCTTGAGGGAGGAAATCTCTATGCCCTTCTGAGGGATTTATCTTAATAAAGGATTGTAATCAATGGACCCTGAGGTTAAAACTAACCCATAGCTAGGTTTTTACTGTCAAAGGTTGGGTATCCCAACGGTTTTTGGATTGTCATTCCTCTCACAGTTTTGTGGTGTTTGTCAGTTAGATCAGCCCCCACCCAAACCTCACAGGTGCATGTTTTGATTTTGTTCCCCtagcacaacacagctgattttaaatcatcaaagcttgatgatgagttggttattagAATCAGCtctagtgctagggcaaaaaccaaaatgtgcacccagagGGGCCCCAGGACAAACTTTGGAAATCCTGAGTTAGATCATAGCTTAAACAATACTGgaattaaagtgtgtgtgtgaaagtgtttgTGAAAGCGAGACAGTCGGACGAAGAGAGAGACTTGAATGGAAAATGCAGTTTACTGGCTTCCTGTCTTGAGTTTTcttttttacctgttttttaTGTTTGTTCTCTGGCCTTGCATGTCAAGTGTACAGTGTGTGTCATTCCTCAGACTGCAACAACAGACTGCTGGCCCCAACCAATGCACTAAGCTTTGCCAGCAAGGCTGCAGAGAGGAAAGTTACATGGACAAAGGCCAGGGAGTCGGGAGGACTGAACAGTTCTGACTAAACAGGCCACCTGGCTGataattgttgttttgttttttttattattattttttttacacttaGCCCCGATTTCACTCTAGCTGATCATTACCTGGACATTGTCTGGCTATGGGACAGACCACTGTCGGACAGCCTGAACATAAATGGACATGTAACCACAACCCCATTCCTGTCCCCTCTGCCTCTTTATGGACTTGGCAAAGAAAACTGATGATGATCATAGTGATGAAtaattgaagaagaaaaaaaatacagatgttTTCATTTTTTATGGAAGATGGCTTTCTATTTATCTCCTTGTTTGACTTTTTTTTCTTAGTGCTGTAGCTTTAGGTTTTCCATCTTATACTTTTCTTTCCTCCCTTGCAGCAGAGGGCTTTATAGCTGAAATGGAttctatcatttttttttaaaaagttgaATAAATTTAAGAGCTGTTTAGTGAAACATGAATCCTAATGAGCTGAATCTAAAACATTGTGTCTCCTTTAAccccctctctgctccctgttcctctcccccctttccctccATTCAGTCAGGATTCTGCTGTAAATAAAACATAATTCTAACTATA

Function

NR:

description
PREDICTED: signal peptide peptidase-like 3 isoform X1

GO: NA

KEGG:

id description
K09598 SPPL3; signal peptide peptidase-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591070.2 False 4163 mRNA 0.48 11 26897950 26936831
XM_021591069.2 True 4179 mRNA 0.48 11 26897952 26936831
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509880 LOC106563212 coding upstream 167396 26720573 ~ 26730554 (+)
LOC110509881 LOC106563214 coding upstream 177496 26699773 ~ 26720454 (+)
LOC110509879 LOC106563215 coding upstream 198813 26569347 ~ 26699137 (+)
LOC110509878 LOC106563216 coding upstream 331224 26556804 ~ 26566726 (+)
LOC110509877 LOC106563217 coding upstream 365153 26504919 ~ 26532797 (+)
LOC110509890 LOC106563202 coding downstream 83396 27020227 ~ 27056214 (+)
LOC110509891 drg1 coding downstream 119750 27056581 ~ 27072987 (+)
LOC110509893 LOC106563198 coding downstream 176655 27113486 ~ 27132244 (+)
LOC110509895 fam136a coding downstream 208513 27145344 ~ 27147704 (+)
LOC110509897 LOC106563193 coding downstream 223669 27160500 ~ 27176934 (+)
G2170255 NA non-coding upstream 17782 26879882 ~ 26880168 (+)
G2170211 NA non-coding upstream 28038 26868624 ~ 26869912 (+)
G2170251 NA non-coding upstream 34514 26863156 ~ 26863436 (+)
G2170175 NA non-coding upstream 100393 26758295 ~ 26797557 (+)
G2170155 NA non-coding upstream 242448 26655298 ~ 26655502 (+)
G2170287 NA non-coding downstream 13329 26950160 ~ 26953340 (+)
G2170289 NA non-coding downstream 18866 26955697 ~ 26968734 (+)
G2170292 NA non-coding downstream 35477 26972308 ~ 26972569 (+)
G2170373 NA non-coding downstream 145313 27082144 ~ 27084777 (+)
G2170346 NA non-coding downstream 245259 27182090 ~ 27186900 (+)
LOC110509876 LOC106563358 other upstream 433389 26463263 ~ 26464615 (+)
LOC110509866 LOC106563223 other upstream 1695309 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2365796 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 3106286 23785060 ~ 23793640 (+)
G2170458 LOC106563185 other downstream 385274 27322105 ~ 27324765 (+)
gigyf1b LOC105024601 other downstream 1366374 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1742017 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2622739 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2648763 29585594 ~ 29587472 (+)

Expression

LOC110509887(LOC106563206) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC110509887(LOC106563206) Expression in each Bioproject

Bar chart with 21 bars.
LOC110509887(LOC106563206) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network