LOC110509895 (fam136a)


Basic Information

Item Value
gene id LOC110509895
gene name fam136a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27145344 ~ 27147704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591092.2
TATTTGGAACCGGAAATTACCAAGATAATGCCGGAAAGCTAGAGCGGATGTGATGTAATTGCCACCAGAACGAAGAGGCATGGTTTCATGGAGGTGACCTACAGTTTGAAACAGTAATGTAACAAGGCTTGCGAATCTTGCAATAGCATACTGTATGTCATTGGTGTGGCTGTTATTTAGCTTTGCAACGTAGCCAAACCGTATCTTCTAACAGTTAGAATTCCGTTTGAATACCCACGCTACTGAGAGCAACGTTTGAAATGGCAGAGGCGCATCAAGCTCGTGTACAGAAAACCATAGAGGATATGGTTCAAAGTTTAGAACGGGACCACATCCGCAAGATGCAAGGACTCATGTTCAAGTGCAGTGCAGAGTGCTGTGAGCGCTCCACAGACTCCATGTCGCAGGTGCACAATTGTATTGAACGCTGCCACGCTCCTCTGGCGCAGGCCCAAGGACTAGTGACCAATGAACTAGAGAAGTTTCAGGACCGGCTGACCAGGTGCACCATGCATTGCAATGACAAGGCCAGGGACCTGTTTGACTCTGGTGCCAAGGAGCCAGCCGTGCGGGCCATGATGGAGAACTGCGTGGGAAGCTGTGTGGACGACCACATCAACCTGATCCCCAGCATGACGCACAGACTCAAAGAGAACCTGGACTCTATTCCACAGTGAGGAGGAGGGAACAGCTTACTTCATATGCATGAGACAGGTTGGACTCTATACTTTAGTGACTGTCATCTGACTCAAATAACACAGAGGAAGTATAAACAGCAGACTCAAAGATGGTTCGTTATTATCACAGTGAAAAAGAGGGAGTTATAAATGGCAGATCCAATGCCTCAGTGAGGGAAAGGGACAGCTTGCAGGAATGAGATTTGGGTCCTGGTAAAAGGTTAATCAGGTCCATGCTGTCGGAGAGGGTGGGGGATATAGCTCAGCTCAGAGTCTGAAGAATCTACACATCCCCTGCAAACTGACTCTGTGTCTTTGTAGCACTTACTGTTTATTGGTTGAACTTACAGACCAGACAGGCCAGCTAAACTTACTCAGCAGAACTGTCTAACATCAAAAATTCCTGTGTCTGTGAACTGTGTGTAAAGGTATTTATTACATGTCCCGATAGCCTAGCTGTTGTATGATTGGAGTCTGTATTCTGCCTCAGTGCTCTAAATATTTGCaacctgttcctctctcctctagcaCGATCTCTGTGCTGTTTGTTTTGTGGGAACCATGCATGTTCTGTGATTCTTTCCCTCGTCACTATATCTGTTTTTATATAAAAATGAAAGCAAATGGTGAAAACGGATGGAATTGCATTTTTATTGCCTTTTTAGCCTGAATTTTCCTTTTATCTAGCTGTGTCTTCTGGCAATTCATCAGAACTTTTTCACTAGAGTTGAACTTGATAGTAATGCACCAAACACACCTTATTAACATCCAGCTTTTGAAAATGCAGGTTTTAATAACGATAAGCATGGTGGAATAATCTCTGTATAATGTACAAATGGATGCACAGACACcaatggtaaaaaaaataatgaattgACAGTAAATCTGTGAGGCTGTTACAGCATATCATGAATGACTGCAAAGACGAGttgcctagtagttagagcattgggccagtaactgaaaggttggaggatcgactccccgagctgacaaggtaaaaatctgttctgcccctggataaggcagttaacccactgttcctaggccgtcattgtaaattagaatttgttcttaactgacttgcctggttaaaaaaaagaCAAGTGTAAAGGTAAGCCTTCACTGTAGATCATTACAATACTGCTATgccaaaataaatatatttgtcAAACTCACTTTACAATATATTATGGCATGTTTATTACAATTATATCCAAAATTGAGATTAAACCTATGGTTTGAAAAAAAAATTGCCCCTTCTACCCCCCCTAAACATTTTTATCAACTGAGGATGCTTTTACATTCACCCTCCTGgtgaccagagaaaaccctccccaACCATCCCCTTCCTGTGGGCCTGAaagcaaacaatgtaaaaaaaaaaaaaaaaaaa

Function

symbol description
fam136a Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; musculature system; and optic tectum. Orthologous to human FAM136A (family with sequence similarity 136 member A).

NR:

description
PREDICTED: protein FAM136A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591092.2 True 2073 mRNA 0.43 3 27145344 27147704

Neighbor

gene id symbol gene type direction distance location
LOC110509893 LOC106563198 coding upstream 13100 27113486 ~ 27132244 (+)
LOC110509891 drg1 coding upstream 72357 27056581 ~ 27072987 (+)
LOC110509890 LOC106563202 coding upstream 89130 27020227 ~ 27056214 (+)
LOC110509887 LOC106563206 coding upstream 208513 26897950 ~ 26936831 (+)
LOC110509880 LOC106563212 coding upstream 414790 26720573 ~ 26730554 (+)
LOC110509897 LOC106563193 coding downstream 12796 27160500 ~ 27176934 (+)
sftpba LOC106563192 coding downstream 90979 27238683 ~ 27256779 (+)
LOC100136172 LOC100136172 coding downstream 347550 27495254 ~ 27499399 (+)
LOC118945286 NA coding downstream 438520 27586224 ~ 27586975 (+)
prp14 prp14 coding downstream 493274 27640978 ~ 27643345 (+)
G2170373 NA non-coding upstream 60567 27082144 ~ 27084777 (+)
G2170292 NA non-coding upstream 172775 26972308 ~ 26972569 (+)
G2170289 NA non-coding upstream 176610 26955697 ~ 26968734 (+)
G2170287 NA non-coding upstream 192004 26950160 ~ 26953340 (+)
G2170255 NA non-coding upstream 265176 26879882 ~ 26880168 (+)
G2170346 NA non-coding downstream 34386 27182090 ~ 27186900 (+)
G2170403 NA non-coding downstream 42363 27190067 ~ 27190382 (+)
G2170405 NA non-coding downstream 46952 27194656 ~ 27196006 (+)
G2170458 LOC106563185 non-coding downstream 174401 27322105 ~ 27324765 (+)
G2170511 NA non-coding downstream 278680 27426384 ~ 27426620 (+)
LOC110509877 LOC106563217 other upstream 612564 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 680783 26463263 ~ 26464615 (+)
LOC110509866 LOC106563223 other upstream 1942703 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2613190 24500361 ~ 24532163 (+)
LOC110509837 LOC106563250 other upstream 3353680 23785060 ~ 23793640 (+)
gigyf1b LOC105024601 other downstream 1155501 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1531144 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2411866 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2437890 29585594 ~ 29587472 (+)

Expression


Co-expression Network