XLOC_004036


Basic Information

Item Value
gene id XLOC_004036
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 14430922 ~ 14432200 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008778
CTGAAATGATCTTACTGTCATCAGCACACACGGTGATCCAAAATAAGAGGACGGCCACGAGAAGTGTCAACTCCATCTGTTTAGCTATAGTAAAGTTCTTGTCCATAATATCAGCGCAAACGGGAATGATATACAAGTTCAGTTGGTAATTTGCTTTTTAAGAACGACCATGTGTGGGAGCGTTTATTGAAAAGCATCACATtcttctgcaaaaaaaaatatatatatatacaagcagTCAAAATTCACTGATAGAACTTCTCACGGTGGATCCATCTAGCATCTCGACTTCCATAGCTTGAGATGTTTCCATGACAATCGACGAAAGAGAGGCGCTGCATGTTAAACTGTAACATCGCTTACTTCTCGCGTCCATTATTTCTTCCCGTGGCTTTCAAAAACTTTTCTTAGACTCGTAAAAAGTGACCAAAGAGTTACCACCCATTCATGTGAAGATGTACGCGCTAAAATCCTTCTTCTCCACACTTGCGCGTGGTCCTTTTTTCTGAAGCCACTTGAAGAGAGTCGGTATTCTATATCACCAGTCAATAAAAGAGGAAAAAGGTCTGCCACACTTCTGTGTAGAACTGCCGTATGAAAGTTATCTTGGTTGCGGGTTCATTACGTGCTCTCCGACGCGATGCTGAACCAACACACGGTGCATCACGCGCAAAGTTGACGCTGTGGCGCTTTGAACGTCTCTTCTGCACGTAAACAACTTGCTGCTTCTCACAGACCGTCGCTTTCATAAatGTCTCAGCCTCTTCGCCTGTCTGTCCTCGACTGCGGGGCGGAGCTGCTTGGAAGAGGGACTGCCTAGACCCACACACTGAAACTTTGGATATATTGGCCATTAGGAAGgtcattaaatgaaattaaacttaATTACAACTCGCATTAGATAACAAATGATAATTGCATCGCTGTGTAGGTGTTTGACATTTTAAACTTTCGTTGTTTCTATAGGCTATTGAGCACAAGGTCTACTGAATAAACTGTTTGCAAATGAAATATGCCAGCTGTACTTACCAAAACTTTAGCTATTACAAGTATTACGTTGTGACTTTTGTGACCCTggcctggaccacaaaacctgaTATTCTTGTGGGAACGCCATGTGATTCAaacttaatggtttttattttatgccaaaatatttataatattaagtaG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008778 True 1173 lncRNA 0.41 2 14430922 14432200

Neighbor

gene id symbol gene type direction distance location
XLOC_004035 NA coding downstream 119685 14308897 ~ 14311237 (-)
XLOC_004034 NA coding downstream 282496 14147663 ~ 14148426 (-)
XLOC_004033 tmem259 coding downstream 328764 14071689 ~ 14102158 (-)
XLOC_004032 CR555295.1 coding downstream 630120 13798453 ~ 13800802 (-)
XLOC_004031 sid1 coding downstream 812510 13616015 ~ 13618412 (-)
XLOC_004037 adora1a coding upstream 234866 14667066 ~ 14669026 (-)
XLOC_004038 CR550307.1 coding upstream 261281 14693481 ~ 14695864 (-)
XLOC_004039 NA coding upstream 322705 14754905 ~ 14759088 (-)
XLOC_004040 sgta coding upstream 339708 14771908 ~ 14813063 (-)
XLOC_004041 CU019562.1 coding upstream 395174 14827374 ~ 14829324 (-)
XLOC_004019 CR450764.8 misc downstream 1739231 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 1809155 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 1839626 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 1917660 12512966 ~ 12513262 (-)
XLOC_004006 BX000700.27 misc downstream 1930660 12499966 ~ 12500262 (-)
XLOC_004063 CR854846.1 misc upstream 1695182 16127382 ~ 16127678 (-)
XLOC_004029 BX530062.1 non-coding downstream 948135 13482671 ~ 13482787 (-)
XLOC_004024 CR450764.5 non-coding downstream 1674647 12756143 ~ 12756275 (-)
XLOC_004042 NA non-coding upstream 441129 14873329 ~ 14874130 (-)
XLOC_004045 CR550302.1 non-coding upstream 585938 15018138 ~ 15019527 (-)

Expression


Co-expression Network