LOC100136172 (LOC100136172)


Basic Information

Item Value
gene id LOC100136172
gene name LOC100136172
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27495254 ~ 27499399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590207.2
CATGTTCGGTGATCCATGATAAATAGGAACCCCTCCCCTCCGAATGAAAGCAGTGAGCGAACGACACAGAACCATAACAGAGAAACGGATGAAAAATACAACCTTTCTACAGGAACAAAATCGTCTCGAATCTCCAACGTCATCATGGGAAAGCTGTGTGAGCTGGCCCTGGTGTCTCTTGTCCTCCTGGTTCTGCTTCATACTGACTCTACATGGGCCAAGAGaagtggcagcagcagcagcaaaaagaCATCATCCAGCAACAGGGGCACAGAAAAAAAGCCGTCGAAAACATCAAACACACAGACGGGAAGCTACCCTAGACAACCCCAAAGCCCCAATAGGAACCCCAACCCGTACCCAGCAGGAGGTAGTTATCCAGGGAGAGGTACCAATCAGAATCAGAACCCAGCCGGTGGATACCCTGCAGCAGGTGGAAACCCCAACCAGCAGTATCCAGGCCGGGGAACCAACCAAGGAGGATATCCTAACCAAAACCCTGCTGCTGGTGGCTATCCTGCTGCAGGTGGCTACCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAATCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGTTATCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAACCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGCTATCCCAACCAGCAGTATCCAGGCCGGGCAAATCCTGGGGGATATCCTAACCAGAACCCAGCAGCTGGAGGTTACCCCGCCGCGGGTGGTTATCCTGCAGCAGGAGGCTACCCCAATCAgaacccagggagaggaggagtcaATCCGGGATACCCAGCCGGAGGTTACCCTGCTGGAGGTTACCCAGTAAGAGGGGGAAATACTGGCTGGGGGCAGGCAGGGGGCCACCCtggtggagggatgggaggaggttACCAACCCAACTGGAACCCAAACAATAAGATCCTCAGTCCCCGCTATGGTGGAGGCTATGGTTATGGAGGTGGGCACGGAGGTATGGGAGGTGGCTCTCCCTTCTCACGTTCAGTTCAGGGAATGGGGCAGTACCCCTCTACTCAGTCCAAGGGGTTTGCTAAGAAGgcttttatggctgcaggggttGGGGCCGTGGCAGGGATGGCGATTGGCTATGGCCTTGGGCGTTTCCCTCGTCCAAACGTCAACTTCCGCAACCCTCAGGAAGAGCAGTCCTACAACAACTACATGTACAAAAAATACGGCGAACGCTCCACAGACGAAAACGACTATGGCCGGGACTACACCTACAAAGTACCTCCACGGGCAGAGTCCTACGACAGCTTCATGGATACCTGCATGAAGAGGAATGACCTTCTGCAGGACCAGGGCAGAGACTCCCAGGCCACACCTAACAACCAGAAGAACAACCCTCAGGGAGCCAACAGCCAGAGCATGCCCATCACTCCTGAGGTGGGGAACAGCAGTCCAGCTAGCAACCAGGAGGGGACAGACAAAGTGAAGCCTCTCACCCCTGCCCCTGGCGAGATAGCTGGAGAGGGTAAGGAAGAGGCTGATGGCCCCACAGTGAGCATTGAAGAGATTGGTTACCCTGCATTGGTGGAGCAGCTGAAGAACCGGAAGTGTGTGGAGCTGTACATAAACCACTCAGAGCGCTTCCTAGAGAAGCAGACAGCCGAACGCAGCAgcggcaacaacaacaacaacaacaaaaatctgaaCAGTCGCAGCAACCCCCTCGGTCAGGGGCTGCTACAGCTGATAACCAGTCTCCTCATGGTCCTGAGCAGCACTCTTCTACTACACTGAGACATATAGTAGGTGTGTCACAGTCGTCTGGAATAGCTTAATTTCATAGTCCCCCTTTCTCATCATGCCACTGATATCTTGTACGGATAGGTTAATTAAGTAAGGTGGAGATATAACCAGTACTTTCACTTATCAGTGGTCATGATGGTAAGGAAGCAAGTGGAAAATAACTTCCAGGGACACAGGTGCACGATAAGGTCCATTTCCTCCACATTTTATGGTGCCATTTGAGCTTCAACATAGTTTTACTGTTTGTCTATTGGCCCATCTCATTTGTGTCTCTAACATTTGCACTGATCTGTCAATTTGGATCTTCGCTGTAGTACTTCTAGACTTCGTTTCTATTGCACATTTTTTTTCATTGCATTTTTTTTCAGAGCAGTTTCTGGTAGAATACTGTGTTGATCACTGTATTTTGTTCTGCAAAACACTAATTTGTTCAGGTCATGGCAAATGCATGATGCTTTAATATTGTATCTCTGCATCTATTACGATATCTCTGTATAaaacactaacacacaaacactacaaGTACATATAGTATAAAGCTTACTATTGACTATTGACTCTGGATATTTATCAGGTTGTAGGCACTAACCAATTTAATTTTTTTGCCAATTGTAAACTCTTATGTGTTATTATGTGATGAGGCAACtatcatctgactctgggtattCAGTGTCTTTGCCAGTGTGGTTTATGAAGTACATAAAGCATTGTCGCCTGTATGCCAGATATTAGCTTGAAATCAATTTGCTCAGAATAATTTTTTGGTGAACTAAACAGTACATTATACTCTACTGTGATATTTATATTTGTACTGTAAAGAGTCCATCTTATGTGGTCTTCAGCAATTGGTTTTAAAAGTTGCCTGTTCCTATTTTTCTTTAGTTCTCTCTTGTcccatacctctctacctccccatctAGTCTCCCTCTCCATTTCCTCCTGTCCCCTGGTTATCAGAAGTGCACTTATTTATCTTGCCGAATGGATATAAACGACTCTtcttttccttttttcccaaGCATGTATTTAGTgatgaacataaaacacacatTGGTTTAATGTGTTTTGGAAATTTAAAATAACCCCTTTGCCATGCTAGAACTAAATGGTGAATATTACTTGGCATTTAAATATCGCAAAAGTCTTCTTCCATTTTCAAGGTACAGGATGAATAAAAACTAAATATATCACATGATCAGCCATTCTCTCTTAGAAAACATGAGGGCAGTTACAGTGACAATCTCACAGAGCACATTGAAGCTTTTAGAGACACATCTGTTGCTAGGAGTCTAATTGCCTCAAGGGAAATTGTTACAGAACAGTCACTACAGTGTGAGAAAATCGAACAGACAGGGTTTCTGCCTGCAAGTTGGCAGCATTACAATTCCCGTTACTGTCTATTAAATGATCCTTAAGCTATCTTTACATCAGAACACAAAGATCTCAACTCATCTCATAcacaaaaacatgtatttttttgtgaactaAGGCCCTATTATTAAATCAAAACCAGTTTTTGTGTTTCTGGGAtactttaaaaataaaataatgttttctCTTCGCAGAAGCCTTGTACACAAGGCTTATATTTGAAA
>NM_001124451.1
ATACAACCTTTCTACAGGAACAAAATCGTCTCGAATCTCCAACGGGCAGTCATCATGGGAAAGCTGTGTGAGCTGGCCCTGGTGTCTCTTGTCCTCCTGGTTCTGCTTCATACTGACTCTACATGGGCCAAGAGaagtggcagcagcagcagcaaaaagaCATCATCCAGCAACAGGGGCACAGAAAAAAAGCCGTCGAAAACATCAAACACACAGACGGGAAGCTACCCTAGACAACCCCAAAGCCCCAATAGGAACCCCAACCCGTACCCAGCAGGAGGTAGTTATCCAGGGAGAGGTACCAATCAGAATCAGAACCCAGCCGGTGGATACCCTGCAGCAGGTGGAAACCCCAACCAGCAGTATCCAGGCCGGGGAACCAACCAAGGAGGATATCCTAACCAAAACCCTGCTGCTGGTGGCTATCCTGCTGCAGGTGGCTACCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAATCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGTTATCCCAACCAGCAGTATCCAGGCAGAGCCAATCCTGGGGGATATCCAAACCAGAACCCTGCAGCTGGAGGTTACCCAGCCGCTGGTGGCTATCCTGCAGCAGGTGGCTATCCCAACCAGCAGTATCCAGGCCGGGCAAATCCTGGGGGATATCCTAACCAGAACCCAGCAGCTGGAGGTTACCCCGCCGCGGGTGGTTATCCTGCAGCAGGAGGCTACCCCAATCAgaacccagggagaggaggagtcaATCCGGGATACCCAGCCGGAGGTTACCCTGCTGGAGGTTACCCAGTAAGAGGGGGAAATACTGGCTGGGGGCAGGCAGGGGGCCACCCtggtggagggatgggaggaggttACCAACCCAACTGGAACCCAAACAATAAGATCCTCAGTCCCCGCTATGGTGGAGGCTATGGTTATGGAGGTGGGCACGGAGGTATGGGAGGTGGCTCTCCCTTCTCACGTTCAGTTCAGGGAATGGGGCAGTACCCCTCTACTCAGTCCAAGGGGTTTGCTAAGAAGgcttttatggctgcaggggttGGGGCCGTGGCAGGGATGGCGATTGGCTATGGCCTTGGGCGTTTCCCTCGTCCAAACGTCAACTTCCGCAACCCTCAGGAAGAGCAGTCCTACAACAACTACATGTACAAAAAATACGGCGAACGCTCCACAGACGAAAACGACTATGGCCGGGACTACACCTACAAAGTACCTCCACGGGCAGAGTCCTACGACAGCTTCATGGATACCTGCATGAAGAGGAATGACCTTCTGCAGGACCAGGGCAGAGACTCCCAGGCCACACCTAACAACCAGAAGAACAACCCTCAGGGAGCCAACAGCCAGAGCATGCCCATCACTCCTGAGGTGGGGAACAGCAGTCCAGCTAGCAACCAGGAGGGGACAGACAAAGTGAAGCCTCTCACCCCTGCCCCTGGCGAGATAGCTGGAGAGGGTAAGGAAGAGGCTGATGGCCCCACAGTGAGCATTGAAGAGATTGGTTACCCTGCATTGGTGGAGCAGCTGAAGAACCGGAAGTGTGTGGAGCTGTACATAAACCACTCAGAGCGCTTCCTAGAGAAGCAGACAGCCGAACGCAGCAgcggcaacaacaacaacaacaacaaaaatctgaaCAGTCGCAGCAACCCCCTCGGTCAGGGGCTGCTACAGCTGATAACCAGTCTCCTCATGGTCCTGAGCAGCACTCTTCTACTACACTGAGACATATAGTAGGTGTGTCACAGTCGTCTGGAATAGCTTAATTTCATAGTCCCCCTTTCTCATCATGCCACTGATATCTTGTACGGATAGGTTAATTAAGTAAGGTGGAGATATAACCAGTACTTTCACTTATCAGT

Function

NR:

description
prion-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590207.2 False 3476 mRNA 0.46 2 27495254 27499399
NM_001124451.1 True 1919 mRNA 0.55 2 27495349 27497932

Neighbor

gene id symbol gene type direction distance location
sftpba LOC106563192 coding upstream 238475 27238683 ~ 27256779 (+)
LOC110509897 LOC106563193 coding upstream 318320 27160500 ~ 27176934 (+)
LOC110509895 fam136a coding upstream 347550 27145344 ~ 27147704 (+)
LOC110509893 LOC106563198 coding upstream 363010 27113486 ~ 27132244 (+)
LOC110509891 drg1 coding upstream 422267 27056581 ~ 27072987 (+)
LOC118945286 NA coding downstream 86825 27586224 ~ 27586975 (+)
prp14 prp14 coding downstream 141579 27640978 ~ 27643345 (+)
LOC110509916 LOC106563177 coding downstream 209184 27708583 ~ 27758941 (+)
LOC110509917 npm coding downstream 264136 27763535 ~ 27768291 (+)
LOC118945283 LOC106563172 coding downstream 392171 27891570 ~ 27894801 (+)
G2170527 NA non-coding upstream 17045 27446668 ~ 27478209 (+)
G2170514 LOC106563181 non-coding upstream 59428 27435378 ~ 27435826 (+)
G2170513 NA non-coding upstream 61553 27430858 ~ 27433701 (+)
G2170512 NA non-coding upstream 67693 27427038 ~ 27427561 (+)
G2170511 NA non-coding upstream 68634 27426384 ~ 27426620 (+)
G2170556 NA non-coding downstream 2687 27502086 ~ 27502345 (+)
G2170561 NA non-coding downstream 9570 27508969 ~ 27509205 (+)
G2170643 NA non-coding downstream 137712 27637111 ~ 27637329 (+)
G2170653 NA non-coding downstream 188531 27687930 ~ 27688168 (+)
G2170662 NA non-coding downstream 199525 27698924 ~ 27699194 (+)
G2170458 LOC106563185 other upstream 170489 27322105 ~ 27324765 (+)
LOC110509877 LOC106563217 other upstream 962474 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 1030693 26463263 ~ 26464615 (+)
LOC110509866 LOC106563223 other upstream 2292613 24944825 ~ 25202836 (+)
LOC110509859 LOC106563234 other upstream 2963100 24500361 ~ 24532163 (+)
gigyf1b LOC105024601 other downstream 803806 28277874 ~ 28313151 (+)
LOC110509373 LOC106563396 other downstream 1179449 28678848 ~ 28681351 (+)
G2173098 NA other downstream 2060171 29559570 ~ 29559959 (+)
G2173114 NA other downstream 2086195 29585594 ~ 29587472 (+)
LOC110509970 LOC106563483 other downstream 2153170 29652518 ~ 29662236 (+)

Expression


Co-expression Network