Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509916 |
| gene name | LOC106563177 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 27708583 ~ 27758941 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005509 | calcium ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021591133.2 | False | 2266 | mRNA | 0.45 | 9 | 27708583 | 27758941 |
| XM_021591134.2 | False | 1866 | mRNA | 0.45 | 8 | 27743119 | 27758941 |
| TU2480872 | True | 559 | lncRNA | 0.50 | 2 | 27708596 | 27709476 |
27,660,000
27,670,000
27,680,000
27,690,000
27,700,000
27,710,000
27,710,000
27,720,000
27,730,000
27,740,000
27,750,000
27,760,000
NC_048593.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| prp14 | prp14 | coding | upstream | 65238 | 27640978 ~ 27643345 (+) |
| LOC118945286 | NA | coding | upstream | 121608 | 27586224 ~ 27586975 (+) |
| LOC100136172 | LOC100136172 | coding | upstream | 209184 | 27495254 ~ 27499399 (+) |
| sftpba | LOC106563192 | coding | upstream | 451804 | 27238683 ~ 27256779 (+) |
| LOC110509897 | LOC106563193 | coding | upstream | 531649 | 27160500 ~ 27176934 (+) |
| LOC110509917 | npm | coding | downstream | 4594 | 27763535 ~ 27768291 (+) |
| LOC118945283 | LOC106563172 | coding | downstream | 132629 | 27891570 ~ 27894801 (+) |
| LOC110509402 | LOC106563375 | coding | downstream | 408405 | 28164582 ~ 28256292 (+) |
| gigyf1b | LOC105024601 | coding | downstream | 518933 | 28277874 ~ 28313151 (+) |
| LOC110509926 | NA | coding | downstream | 558381 | 28317322 ~ 28381826 (+) |
| G2170664 | NA | non-coding | upstream | 8446 | 27699937 ~ 27700137 (+) |
| G2170662 | NA | non-coding | upstream | 9389 | 27698924 ~ 27699194 (+) |
| G2170653 | NA | non-coding | upstream | 20415 | 27687930 ~ 27688168 (+) |
| G2170643 | NA | non-coding | upstream | 71254 | 27637111 ~ 27637329 (+) |
| G2170561 | NA | non-coding | upstream | 199378 | 27508969 ~ 27509205 (+) |
| G2170748 | NA | non-coding | downstream | 65737 | 27824678 ~ 27824898 (+) |
| G2170749 | NA | non-coding | downstream | 66519 | 27825460 ~ 27825736 (+) |
| G2170750 | NA | non-coding | downstream | 67673 | 27826614 ~ 27826821 (+) |
| G2170820 | NA | non-coding | downstream | 172586 | 27931527 ~ 27931754 (+) |
| G2170822 | NA | non-coding | downstream | 176574 | 27935515 ~ 27936492 (+) |
| G2170458 | LOC106563185 | other | upstream | 383818 | 27322105 ~ 27324765 (+) |
| LOC110509877 | LOC106563217 | other | upstream | 1175803 | 26504919 ~ 26532797 (+) |
| LOC110509876 | LOC106563358 | other | upstream | 1244022 | 26463263 ~ 26464615 (+) |
| LOC110509866 | LOC106563223 | other | upstream | 2505942 | 24944825 ~ 25202836 (+) |
| LOC110509859 | LOC106563234 | other | upstream | 3176429 | 24500361 ~ 24532163 (+) |
| LOC110509373 | LOC106563396 | other | downstream | 919907 | 28678848 ~ 28681351 (+) |
| G2173098 | NA | other | downstream | 1800629 | 29559570 ~ 29559959 (+) |
| G2173114 | NA | other | downstream | 1826653 | 29585594 ~ 29587472 (+) |
| LOC110509970 | LOC106563483 | other | downstream | 1893628 | 29652518 ~ 29662236 (+) |
| G2170673 | NA | non-coding | downstream | 4378 | 27713854 ~ 27714073 (+) |
| G2170675 | NA | non-coding | downstream | 7992 | 27717468 ~ 27717723 (+) |
| G2170676 | NA | non-coding | downstream | 8606 | 27718082 ~ 27718376 (+) |
| G2170677 | NA | non-coding | downstream | 9264 | 27718740 ~ 27719118 (+) |
