LOC110509401 (LOC106563170)


Basic Information

Item Value
gene id LOC110509401
gene name LOC106563170
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 27940621 ~ 28015435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967672.1
cGTGGGGGGCGGTGGGGAGTTAGTTGAgggctgtgtggagagagagaatgccagaagaggaggaagataaatctctctctgtccaaccCTCTGTTCCGTTCCTGGATTCATTCTTGGGAGTCCGTCACCGTCCCGCCTGCTGTGCTGCCTCTGGATCTAAGTCTCCTGGATTACAGCTCCGTTTCTCCGCTCATTGCTCCTGACGCTTGAATTTCCACGGCAGGCAAAGTTGGGCATCCAGAGACTATATGTTGACTGCCTGTTCATTTCCTCTTGAATTTGTATGCTGTTTGAGCTTCAAAATGAAGTGTGATTTTAATATGACAGAGAAAAGAGCTCCGTCTCTTTTTTGGGGATTGTTTACTTATAGGATAGGCTAGTGATTTTGATATATTTTGAACTTCGTTGTCGCTGGTGATTTGGTTGTGAGGGACAAGATGAGTGGGGAGGGAGGTTAGAAATGTAGGAATTGTTGATGTcttttcatgttttatttttatcAAACAGAGACATTCTAACCTCACTCACCCGTCTTTCTTTTTTACTGACGATGTGACCTTAGTGGTCTCTGTTTTTCAGTGTTTTTTAGTGTTGCTGCATTTATTGCTCGTCACACTGGAGGGTCCGCTTTGGATGTGTGACTGCACTTGAACTCTCACCGTCCCCTGCTCTTCCCTTTTCCAGGGGGCTCTTAACCTAGACCCTCTCTCTTTAACCCTGTGTAaaacccctctcccctctctgggggcTCTCTCTGGACCTTCCCACCATTTTCTGTTGCTTGAGGACACAGACAGCCCCGCCAGAAGAGGGGCTGTTGGGTAGGAAGACACCCCCCTCCCAAAGGTGAGAGGGGGGGGAAGATGGCAGCTCTCGCCAGCTCTCTCATCAGACAGAAACGGGCGGTCAAGGACGACGGACAAAACCGACCGGTAGCCAACAAGAGGAAGCCTTGTCCCAAGAGCAACAAGTCTCTGTGCCAGAAACAGATCCTAGTCCTTATCTCTAAAGTGCGGCTATGTGGGGGTCGAAAAAGTCGAAAAGAAAAGAGACCGGAGCCCCAGTTGAAAGGCATCGTGACCAGGCTGTACAGTCAGCACGGATACTACCTGCAGATGCATCTGGATGGCACCATGGACGGCACAAGGGACGAAAGCAGCTCCTTCTCACAGTTCAACTTGATTCCTGTGGGTCTGAGGATCGTGGCGATCCAGGGGGCGAAGACAGGGCTCTACCTGGGCATGAACAGCGACGGGTACCTTTACACCTCTGAACACTTCACCCCCGAGTGTAAGTTCAAGGAGAGTGTGTTTGAGAACTACTACGTGACGTACTCCTCCATGCTCTACAGACAGAGCCAGTCGGGCCGCTCCTGGTATATCGGTATCAACCGCGACGGACAAGTCATGAAGGGCAACCGGGTGAAGAAGACCAAAGGTGCTGCACACTTCCTGCCTAAAGTTATAGAAGTTGCCATGTATAAGGAGCCATCGCTACACGAGCTAGTCAacgaacagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagaaggccCTGCCCAGAAGACAGTGAAGACGTCAGAAGAACGTCATGAAAGAACTTTCTCCATCAAGAACTGCAGGAAAGAAAAAAAAGCCCCCAAGGCTGATGCCTCGTAGCACAGGGGACCGATGGTGGGGGAAGGGCAGCAGTGACACTGAGAACTAAATAGGGACTTAATCGCCCATCATGCACTTGGGCTGGCTGGAGGAATGGTCCCCTTTCCCCAGAAGTGCACTGGGCTGCACCATGATGAAGTGTCAGGGGTCAACAGCCCATCAGGTCTGGGTCTGGGAGGAATTCCTCTCACCTGCCACCAGAGAGGAAGATAGACAAGGGCCCAAGTCAGCACCACCACCCTTCCTCCCTGTCAATCACCTTTACCCCTTCTCCTCTAGCACACTCACTACCAAAGGCACAGCCTGTATAATCTCTCTGTCATTCATCTACTGCCTTCCCATCACCTGTCCTAGTTTCTAGAAATCACCTCCACTCGCGCACACACTTTAATTTATAATTGTTGTATTTTGATGTGCAAATgtgtgattgtgtctgtgtgtatgtgtgagagagaggtgtgtaaCAATAATCACTTCATGTCATCATAATTACTACTCTCGAGTCCACTCTTCTAATTAATGGCAATCACCGCGGTGAAAGTGTGACTATGCCTGGCCTCCACCATCTGTCCACCTGCAAATCACACACCTCACAGCTGGAGGCGGGACATCAAAATGATGTTTTATTGGACAACATCGGGGCGGGATCTATTTTTATTTGGTAGCAGGGCTGTCTGTTGAACTGCAGTCAGCAAATCAatttcaaaaaagccaaatcatcTGTTGAAAGAGACAAGTCAAGCAAGCCCTTTTGGGATCAGAGTTATATCTACAGGCTACAAGATGACCTTTTCTATCTCCCTCTTTCAAAGTTCCTTTCTCTAACGATCAATCACAATGAGGAAGGTAATAATGGAGGGAACTGAAGAAGTTTATGATAATAAAtcatgaggatgatgatgataataataattacagtggtTACGGTGATTATGGTGATAATGATGATTCAACTACTGTATAACTTTGCAATAATCTCACAGACAGAAATTTCAGGGTATTCCATTATCTGAAGTGAATAGCCATTTTCCCTTCTGGAGCCATGAAAGCACCATGTCCAAAAAACTATGAGAGCCCCGACTTGTACATGACTGCCATGTCTGGCCCACATAACAGTAGCCTGACAgagatgatttcagtttgtgatcAGCAGGCTGACTCTGAGCATGTGAGAGCGTGATGGAGCTAAATACCCTCTGGGCCCAGAATGAGGCTATGTTATTATGATGTAACTCTTTGAAGGTTCTTTCCAGGGGGTTTTATGGAATACAGCCATCATTGCTTGAATTATTCACCTACATTTGTGTAAAATGTTGTAACTAGTCTCTGCAATATTTGTACAGTTTTGAGTCTCTTTAAGAGCTGGGCTGTGTGAAAAGAGAAAGTCAGCTTTTTTGCAAGTGTGTGAGATAGTTACTGAGTGAGTGGTTATGAATGCGCCTGCTTAACAATCTCCCTATTTGCCAGCCTCCCTAACTCAGCTTGTGGTGCTCTTTTTTGTTGACCATAATGCACAAAAATACAGTATTTCAGAGAACTTAAATTGATTAGATTCTCTGTCACCTGAAAGGTAATGCCAGTGATTGTTGAGTGTATCCTTTGCTTGGCAACTGTTGCCGACATAAAGCCGAGTTTAAAGCTGACATCAAAGCCTGAGGAGGCTCTGAGCTGGAGCCCCTACTTACTATTCTACAGACGTCCCACTCCTTATCCACTCACCAGCCTTATCAAATCAGCACAGAGGAATCCACTCGCAAATATGGATTTCTTTGTGTGCGTGGCTGTTTGTGATTGTGTTCTTCCCCCAGTGTAGCGATGTTTGTGGGAATATGTGAGTTTATTTTGGGAGTGcattgtgtgtgcatgcctgtgtgtgcatgtgtgggtttgtgtgcgtgcgtgtgtgtgttaagtGGGAGGTGACTTCTGCAATGTCCTTCACCCTGAACATAGGGCACTGGGAGGGCTCTCTTTGTGATGTCCTTCTCTGGGGAGGTGACATTTGTGGGGCAAATGGCCACCTTTCAAACACAGCACTGTCACGGTATTGTTATTGGCCTGAGAGTGCTGCAGGTATCAATGGGCAATAAAATCTAAAACAAATTGTGGACAACAGCACAGCACAACATATACAGGAACAGCCCAGTGTACAGAAGGTTGCTTTTCTAGGCATGGGGATATGTACAGTAAAATGCCGAAAGACATTTCTGACCTTGTACATAGCAGCGTAGCATGTTCCTGCCATGGCGACTATGCTGTTAGAGTGAGCTAGCATGCCATTGTATATTACAGAGCAGCACTGCACTGACCTCCTTTAATATCCAGCCAATGTGGAGACTTATACCACAGTCTCTTGGAGAATCCTGCTTAGAAAAATCCAGTCGCAGTGGACTGCCTGTAAATATGTTGACCAACATTACAGAAGAATGCACACAGAGAGGGCGAATAGATACAAATGTTCCAGAATGTACAGACTGTGAGATGGGTGTTTTCTGCATGTTATTAAGGACGAGAGTATGTCTGAGATGGTCTAGAGCAGTGGATCCCAAacctttaaaaaacattttttactaggcaagtcagttaaaacaaattcttattttcaatgacggcctaggaacagtgggttaactgcctattcaggggcagaacgagagatttgtaccttgtcagctcaggaatttgaacttgcaaccttctggttactagtccaacgctcgaaccactaggctgccctgccgCCCCGTATAGTCCTGtatcccttcaaacattcaacctccagctgcgtaccccctccagcaccagggtcagcgcactctcaaatgttgttttttgccatcattgtaagcctgaaACAC

Function

NR:

description
fibroblast growth factor 11-like isoform X2

GO: NA

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967672.1 True 4549 mRNA 0.46 5 27940621 28015435

Neighbor

gene id symbol gene type direction distance location
LOC110509921 cldx coding downstream 40721 27895651 ~ 27899900 (-)
LOC110509920 NA coding downstream 50332 27865704 ~ 27890289 (-)
LOC110509400 NA coding downstream 90666 27843800 ~ 27849955 (-)
LOC110509919 LOC106563174 coding downstream 100943 27823605 ~ 27839678 (-)
ugt5g2 NA coding downstream 118444 27820027 ~ 27822177 (-)
LOC110509923 LOC105024622 coding upstream 241374 28256809 ~ 28265547 (-)
LOC110509372 LOC106563382 coding upstream 252672 28268107 ~ 28269824 (-)
LOC110509924 LOC106563379 coding upstream 255157 28270592 ~ 28273502 (-)
LOC110509403 LOC106603218 coding upstream 261011 28276446 ~ 28279590 (-)
LOC110509929 LOC106563388 coding upstream 516562 28531997 ~ 28536813 (-)
G2171620 NA non-coding downstream 979 27937562 ~ 27939642 (-)
G2171638 NA non-coding downstream 16962 27923457 ~ 27923659 (-)
G2171623 NA non-coding downstream 37826 27901735 ~ 27902795 (-)
G2171577 NA non-coding downstream 106521 27833363 ~ 27834100 (-)
G2171570 NA non-coding downstream 112004 27828264 ~ 27828617 (-)
G2171719 NA non-coding upstream 49003 28064438 ~ 28069007 (-)
G2171725 NA non-coding upstream 60270 28075705 ~ 28082641 (-)
G2171728 NA non-coding upstream 91332 28106767 ~ 28135613 (-)
G2171747 NA non-coding upstream 138183 28153618 ~ 28159667 (-)
G2171753 NA non-coding upstream 147870 28163305 ~ 28163587 (-)
G2171619 NA other downstream 3808 27935454 ~ 27936813 (-)
G2171531 NA other downstream 179919 27757983 ~ 27760702 (-)
G2171272 NA other downstream 744604 27193516 ~ 27196017 (-)
G2169325 NA other downstream 1933749 26006141 ~ 26006872 (-)
LOC110509871 LOC106563220 other downstream 2349731 25584559 ~ 25607056 (-)
LOC110509931 mpp1 other upstream 545727 28561162 ~ 28576997 (-)
G2172414 NA other upstream 804315 28819750 ~ 28820509 (-)
G2173258 LOC106563498 other upstream 1409288 29424723 ~ 29427867 (-)
G2174066 NA other upstream 1929030 29944465 ~ 29945418 (-)

Expression


Co-expression Network