LOC110509923 (LOC105024622)


Basic Information

Item Value
gene id LOC110509923
gene name LOC105024622
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 28256809 ~ 28265547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591142.2
CCATCGAGCTTTCATCTCTGGTGCGCACGAGGCATTCCATTGCGCTCTGAACAAGGGGCAAGGACACAAGTGGAGAAAGCCTATTTCAAGCTAATTTCATATTGTGTATGCCTAAATACTAGACAATTCGGCGTAGAAAGTGATTTTTTACGGAGTATATTGCACATGTACTTTGTTTAGCAGCGCCTTCTAAACATGTTGCACCATTTTGCGAATGACTTCCATTTCAGggcCGGTGGTGGTACTGCTGACGGTACTCCAGTGGGCAGGACGAGGCCTCCCTTCTCCTGTCAGGCCCATCTGTGACCCCCGCGTCCTGGATCGCTTCATCATGGAGGCCCGCGACACAGAGACCGCTCTGCGAGGTTGCAAGGCAGGGTGTGGAGTGACAGGCACATTTGTGGTTCCTCTGACAAATGTTGACTTTGTAGTCTGGGAGACAAAGGATactgaggagcaggctttGGAGGTCCAGTCGGGGATGTCTCTGTTCGGCCAGGCCCTGGGTGCTGTGAGGGAGTCAGTGAGCCGTGTTGCCGTGCAGATCCTCATCGACAACAACAAGAGCAACATCCACAGCCTGGGCCAGGTGCTGCGCAGCCTCCACATCCAGGACCTGCCCCTTCCTCCAGCACCAGCAGTAGGTGACTTAGTGACTAGGAAGGTGTCGTCCTTATCTGAGCTGCTCCATGTCCACACCAACTTCCTACGAGGGAAGGTTCGCCTGCTGCTCACCAACGCACCTGCCTGTCAACAGAACAGCACTTGATTGGAGCTTTCCTCTGTGATTGGACCGTTGTttagagagaggatgaggtgatTGGACGAAGTCTCTGAATGGCTTACCAGTATGGAATGTGTAGACAAGGTGATTGCTGACCGGACAAAAACTGGTGGATAAGTAAGTTCCCTGTGGGTGGAGTTGGTGAGAACAtgaatgagtgagagagaaaaaaacggaAGTTCTACAGCTCATTGACCTCACCAGTTCCTCATACTACCTAGCAGTACTGCCAAAGAGCTCTGATGCATGCAGTGGAATAAGCTACAGATGGAACACATCATAGAAGATCATATATAAAGTCCTAAATCCAATAATTGTATATTATGTTCTATTTATACAGCTTGCATTAAACTTGTCTTAACCGTGTTTTTATATAAATCTCTATTTTCATATATGAGTGTGTCCCTTTTAGTCTTTGAACCATAGGTTTCTCATTGATGCTAAGGTTTAACATACTGAAgtcagtgtttgtgtgttcatGTAATATACTTGCTCAGTGCCGTTATAATTCAGACCACAGGTAC
>TU2482485
TGGGAGTTAGTTGTCATAGGGGGTTGATGTCTCTTCTGTGTAAATCCTCTGCAGAAGTAAATCAGAATTAGATTTTATAACCCACCTCATAGAGAAGCCATCGTATTGGCTCGAATGGGTTTTCCCAGTCCAACAGTCAAAACAGTCAGTTAATATTGTACAACCTTCACACTGTACCTGCTCTAGTGACCTTCTATTCTCTGGAACTGGTTGACATAACTTCCTGTTATGTGATTGTCAGATTTGCTGCCAGTCTGTAACTGCTCTCAGCCACCATTTCTAGCATTAGcctgatgatgtgtgtgtgtgtgtgtcccagggcCGGTGGTGGTACTGCTGACGGTACTCCAGTGGGCAGGACGAGGCCTCCCTTCTCCTGTCAGGCCCATCTGTGACCCCCGCGTCCTGGATCGCTTCATCATGGAGGCCCGCGACACAGAGACCGCTCTGCGAGGTTGCAAGGCAGGGTGTGGAGTGACAGGCACATTTGTGGTTCCTCTGACAAATGTTGACTTTGTAGTCTGGGAGACAAAGGATactgaggagcaggctttGGAGGTCCAGTCGGGGATGTCTCTGTTCGGCCAGGCCCTGGGTGCTGTGAGGGAGTCAGTGAGCCGTGTTGCCGTGCAGATCCTCATCGACAACAACAAGAGCAACATCCACAGCCTGGGCCAGGTGCTGCGCAGCCTCCACATCCAGGTGACTCACTGAGGAGTGACCTGCCCCTTCCTCCAGCACCAGCAGTAGGTGACTTAGTGACTAGGAAGGTGTCGTCCTTATCTGAGCTGCTCCATGTCCACACCAACTTCCTACGAGGGAAGGTTCGCCTGCTGCTCACCAACGCACCTGCCTGTCAACAGAACAGCACTTGATTGGAGCTTTCCTCTGTGATTGGACCGTTGTttagagagaggatgaggtgatTGGACGAAGTCTCTGAATGGCTTACCAGTATGGAATGTGTAGACAAGGTGATTGCTGACCGGACAAAAACTGGTGGATAAGTAAGTTCCCTGTGGGTGGAGTTGGTGAGAACAtgaatgagtgagagagaaaaaaacggaAGTTCTACAGCTCATTGACCTCACCAGTTCCTCATACTACCTAGCAGTACTGCCAAAGAGCTCTGATGCATGCAGTGGAATAAGCTACAGATGGAACACATCATAGAAGA

Function

NR:

description
erythropoietin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591142.2 False 1308 mRNA 0.48 5 28256809 28265547
TU2482485 True 1177 TUCP 0.51 4 28257046 28262789

Neighbor

gene id symbol gene type direction distance location
LOC110509401 LOC106563170 coding downstream 241374 27940621 ~ 28015435 (-)
LOC118945284 NA coding downstream 267201 27988650 ~ 27989608 (-)
LOC110509921 cldx coding downstream 356909 27895651 ~ 27899900 (-)
LOC110509920 NA coding downstream 366520 27865704 ~ 27890289 (-)
LOC110509400 NA coding downstream 406854 27843800 ~ 27849955 (-)
LOC110509372 LOC106563382 coding upstream 2560 28268107 ~ 28269824 (-)
LOC110509924 LOC106563379 coding upstream 5045 28270592 ~ 28273502 (-)
LOC110509403 LOC106603218 coding upstream 10899 28276446 ~ 28279590 (-)
LOC110509929 LOC106563388 coding upstream 266450 28531997 ~ 28536813 (-)
LOC110509930 LOC106563389 coding upstream 278609 28544156 ~ 28553877 (-)
G2172043 NA non-coding downstream 543 28164582 ~ 28256266 (-)
G2172068 NA non-coding downstream 50580 28203736 ~ 28206229 (-)
G2171753 NA non-coding downstream 93222 28163305 ~ 28163587 (-)
G2171747 NA non-coding downstream 97142 28153618 ~ 28159667 (-)
G2171728 NA non-coding downstream 121196 28106767 ~ 28135613 (-)
G2172108 NA non-coding upstream 46319 28311866 ~ 28312734 (-)
G2172173 NA non-coding upstream 149388 28414935 ~ 28415145 (-)
G2172181 NA non-coding upstream 167726 28433273 ~ 28433545 (-)
G2172192 NA non-coding upstream 181230 28446777 ~ 28446999 (-)
G2172193 NA non-coding upstream 182209 28447756 ~ 28448078 (-)
G2171619 NA other downstream 319996 27935454 ~ 27936813 (-)
G2171531 NA other downstream 496107 27757983 ~ 27760702 (-)
G2171272 NA other downstream 1060792 27193516 ~ 27196017 (-)
G2169325 NA other downstream 2249937 26006141 ~ 26006872 (-)
LOC110509871 LOC106563220 other downstream 2665919 25584559 ~ 25607056 (-)
LOC110509931 mpp1 other upstream 295615 28561162 ~ 28576997 (-)
G2172414 NA other upstream 554203 28819750 ~ 28820509 (-)
G2173258 LOC106563498 other upstream 1159176 29424723 ~ 29427867 (-)
G2174066 NA other upstream 1678918 29944465 ~ 29945418 (-)
G2174100 NA other upstream 1709816 29975363 ~ 29977567 (-)

Expression


Co-expression Network