trnat-agu-153


Basic Information

Item Value
gene id trnat-agu-153
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 28591552 ~ 28591625 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnat-agu-153
GGTGccgtggcttagttggttaaagcgcctgtctagtaaacaggagatcctgagttcgaatctcagcgGTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu-153 True 74 mRNA 0.53 1 28591552 28591625

Neighbor

gene id symbol gene type direction distance location
trnas-gcu-265 NA coding upstream 385 28591086 ~ 28591167 (+)
LOC118945686 NA coding upstream 822 28590597 ~ 28590730 (+)
LOC118945310 NA coding upstream 66963 28517417 ~ 28524589 (+)
LOC110509928 LOC106563383 coding upstream 98095 28440077 ~ 28493457 (+)
LOC110509926 NA coding upstream 209726 28317322 ~ 28381826 (+)
LOC110509935 LOC106563395 coding downstream 24060 28615685 ~ 28626007 (+)
LOC110509933 LOC106563393 coding downstream 34885 28626510 ~ 28633623 (+)
LOC118945699 NA coding downstream 36367 28627992 ~ 28628204 (+)
LOC118945688 NA coding downstream 36807 28628432 ~ 28628511 (+)
LOC118945700 NA coding downstream 38510 28630135 ~ 28630319 (+)
G2171963 NA non-coding upstream 2881 28588431 ~ 28588671 (+)
G2171960 NA non-coding upstream 5051 28586087 ~ 28586501 (+)
G2171933 NA non-coding upstream 48778 28542239 ~ 28542774 (+)
G2171932 NA non-coding upstream 50678 28540605 ~ 28540874 (+)
G2171931 NA non-coding upstream 51458 28539874 ~ 28540094 (+)
G2171984 NA non-coding downstream 66692 28658317 ~ 28658595 (+)
G2171985 NA non-coding downstream 67770 28659395 ~ 28659623 (+)
G2171987 NA non-coding downstream 72234 28663859 ~ 28664126 (+)
G2172002 NA non-coding downstream 96048 28687673 ~ 28687895 (+)
G2172335 NA non-coding downstream 160212 28751837 ~ 28752222 (+)
gigyf1b LOC105024601 other upstream 278401 28277874 ~ 28313151 (+)
G2170458 LOC106563185 other upstream 1266787 27322105 ~ 27324765 (+)
LOC110509877 LOC106563217 other upstream 2058772 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 2126991 26463263 ~ 26464615 (+)
LOC110509866 LOC106563223 other upstream 3388911 24944825 ~ 25202836 (+)
LOC110509373 LOC106563396 other downstream 87223 28678848 ~ 28681351 (+)
G2173098 NA other downstream 967945 29559570 ~ 29559959 (+)
G2173114 NA other downstream 993969 29585594 ~ 29587472 (+)
LOC110509970 LOC106563483 other downstream 1060944 29652518 ~ 29662236 (+)
LOC110509988 tmem261 other downstream 1277513 29869091 ~ 29874237 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnat-agu_7 NA coding NC_053127.1 CM020924.1 17527235 ~ 17527308 (+)
striped catfish (Pangasianodon hypophthalmus) trnat-agu_18 NA coding NC_047619.1 CM018565.1 2535466 ~ 2535539 (-)
bowfin (Amia calva) AMCG00020677 NA coding CM030127.1 CM030127.1 29059415 ~ 29071096 (-)
tiger barb (Puntius tetrazona) trnat-agu_68 NA coding NC_056723.1 CM032092.1 13168563 ~ 13168636 (+)
tiger barb (Puntius tetrazona) trnav-aac_5 NA coding NC_056702.1 CM032071.1 27134799 ~ 27134871 (+)
mexican tetra (Astyanax mexicanus) trnat-agu_18 NA coding NW_019172695.1 APWO02002293.1 1979 ~ 2052 (-)
mexican tetra (Astyanax mexicanus) trnat-agu_46 NA coding NW_019172925.1 APWO02000034.1 729125 ~ 729198 (+)