LOC110509936 (LOC106563400)


Basic Information

Item Value
gene id LOC110509936
gene name LOC106563400
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 28683308 ~ 28687493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591161.2
TGTACACTACCACAGAGTCCCCACAAGCTTGTACAGTGCGCGCTACCTAGGCGTTGCCCATTACAACTTAGTTGATAGGTAAGAACTTGAAAAGGTGAGGGATTTTGAGGTAGTGTGAGCAATACCAGGCTTATTGAAGGAGACAGAAATACGCACCAACATTTCCTTTAAAATGTACTCCACACTGAAAATGGTGCTGCTGCTCGGCATGATGGGTTGTGGGCATTTAATCACAGTGACGGTTCCCCAGAAGTTTGAGAACGTGACAAAGGGTGAAAGTGCTCTTCTCCAGTGCACCTTTGTTACCACTGAGCAGAAAACCAGTGACCTCATCATCCAGTGGAATTTTGTTTCCAAAACCTCCATGGTGCCACAGCAGGTATATTACTTTCAGTCAGGAGAGGGCGTGATTTCCAAACCATATGAAGGCAGGTTGAAGCCTTCCAGCTCTCCAGCTTCTACCAACAATGCCTCAATAACAATAAGCAACATGAAAGTGTCCGATGCAGGGGCCTACACCTGCGAAGTCCGCAACTTCCCTGATGTCAGTGGGAAGACTGAGGCAACTATCATTGTCAACATTCTTGAGATGCCCTCTGTGCCGTTCTGTGCTGTCCATGGTGATGTGGAGTCTGGTCACCTGGTTACCCTCACCTGCCACAGTGAGCAGGGAAGCCCCACCCCCTCCTATACCTGGACAAGACTGGACCAGGACAAGACCAATAGACCTGTGCTGGGGTACACCGATCCGAAAATAGGATCCTTGTATATTAGAAACATATCCCAGTTTGAGTTTGGAGAGTACCAGTGCAGTGCCTCTAATGATGTGGGATCTGCCACTTGCACTGTGGAGCTCAATCATGAGCTAGGTGATGGGGCCATTGCTGGTGCAGTCATTGGAGCACTTCTTGGAGCTCTCCTAATCATCCTTATTGTCTTGTACATGACACACTCCATGAAGAAGCAGAAATACAAGGATATCAAGGAAACAGAGATGCAggCCAAACCTAAGAGTTCGACCACGGTGGCGTATGAAGGCGTCCCTACCACGGGGAGTAGCCACCAGGCCTTTGTAACCTCCGAGGGGGTTCCCATGGCAACACATAGCCATGTCCATGCTGACGCTGATGGAGAAGAGGCCGAGGCTTAGGAGAAGCCTGACACACACGTCTGGGGTGACATCACTGTCTGGGGTGACATCACTGATCTGAAAAACACTGCTGCACTGAAGGTTACCAATGCCTGTGTGTTTGGAGAGTGAATCCATAGCATTTTTTAGTTTGTTTCTGTGTTTTTGTATAATGTGTGTTTTATTGACACATTTAAATAATGCTTCGTATTTGTTTTGTCATTTTAAGAAACTTAAAGTTATTGTATTCCAAATATCTTTCTTTCACACGCAAAAAATACTAATCACTCTACAGCCTGATTAATTCTAATATGTGGTAATCCATCCATTCCCTGACTAGATTTCATGATCTAATGCCAATTGCATATTCATTGTGACATTCTAACCAATAATGACTCATCCAGGTTTTCTGGAAAAAATAAAGAATTTTGCATAAACTGTTTCATTACTAATGTG

Function

NR:

description
V-set and immunoglobulin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591161.2 True 1585 mRNA 0.45 7 28683308 28687493

Neighbor

gene id symbol gene type direction distance location
LOC110509934 LOC106563394 coding downstream 33575 28633897 ~ 28649733 (-)
LOC110509932 LOC106563391 coding downstream 77103 28592328 ~ 28606205 (-)
trnal-uag-55 NA coding downstream 91225 28592002 ~ 28592083 (-)
LOC110509931 mpp1 coding downstream 106311 28561162 ~ 28576997 (-)
LOC110509930 LOC106563389 coding downstream 129431 28544156 ~ 28553877 (-)
LOC110509937 LOC106563397 coding upstream 11402 28698895 ~ 28744025 (-)
LOC110509941 brcc3 coding upstream 363276 29050769 ~ 29098148 (-)
LOC110509943 fundc2 coding upstream 414575 29102068 ~ 29110664 (-)
LOC118945312 NA coding upstream 426275 29113768 ~ 29124286 (-)
LOC110509945 LOC106563512 coding upstream 489902 29177395 ~ 29273565 (-)
G2172296 NA non-coding downstream 1202 28681660 ~ 28682106 (-)
G2172295 NA non-coding downstream 1705 28680624 ~ 28681603 (-)
G2172291 NA non-coding downstream 8400 28674547 ~ 28674908 (-)
G2172287 NA non-coding downstream 11240 28671654 ~ 28672068 (-)
G2172286 NA non-coding downstream 12691 28670266 ~ 28670617 (-)
G2172301 NA non-coding upstream 2983 28690476 ~ 28690699 (-)
G2172329 NA non-coding upstream 60018 28747511 ~ 28748086 (-)
G2172336 NA non-coding upstream 65511 28753004 ~ 28753218 (-)
G2172362 NA non-coding upstream 85424 28772917 ~ 28773162 (-)
G2172374 NA non-coding upstream 107396 28794889 ~ 28795195 (-)
LOC110509923 LOC105024622 other downstream 420519 28256809 ~ 28265547 (-)
G2171619 NA other downstream 746495 27935454 ~ 27936813 (-)
G2171531 NA other downstream 922606 27757983 ~ 27760702 (-)
G2171272 NA other downstream 1487291 27193516 ~ 27196017 (-)
G2172414 NA other upstream 132257 28819750 ~ 28820509 (-)
G2173258 LOC106563498 other upstream 737230 29424723 ~ 29427867 (-)
G2174066 NA other upstream 1256972 29944465 ~ 29945418 (-)
G2174100 NA other upstream 1287870 29975363 ~ 29977567 (-)
LOC110510010 requ other upstream 1612122 30299615 ~ 30312873 (-)

Expression


Co-expression Network