LOC110509941 (brcc3)


Basic Information

Item Value
gene id LOC110509941
gene name brcc3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29050769 ~ 29098148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591165.2
GGAATAATCCGCCTCCTTGCAAAACCGTACTGTTATTGATGTAACACACGCTTTGATAAGGAGTAGATAGTTAACTCTAGTTTGTGGAGTTTGATAAATAGCTAGCTATAACATGGCAGTGAGCGCAGTTCACCTCGAATCAGATGCCTTTTTGGTTTGCATGAATCATGCATTAAGTACCGAGAAGGAGGAAGTAATGGGACTCTGCATCGGAGAGGTGGACACCAACCGCATCGTCCACATTCACTCTGTTATTATTCTGCGACGCTCAGACAAGAGGAAGGATCGCGTGGAAATCTCGCCTGAGCAGCTATCTTCAGCTGCTACCGAAGCTGAGAGGTTGGCTGATATGACTGGACGGCCGATGCGTGTAGTTGGTTGGTACCACTCTCACCCCCACATCACTGTGTGGCCATCACATGTGGATGTAAGGACACAGGCCATGTACCAAATGATGGACCAGGGCTTTGTTGGGCTGATATTCTCCTGTTTCATTGAGGATAAGAACACAAAAACTGGTCGAGTTCTCTACACCTGCTTCCAGTCTGTACAAGCCCAGAAAGGCTCTGAGTACGAGAGAATCGAGATCCCAATTCATGTGGTCCCGCATGAGGCCATTGGGAAAGTGTGCCTTGAATCAGCAGTAGAGCTCCCAAGAATCCTCTGCCAGGAAGAGCAGGATACCTACAGAAAGATTCACAGCTTAACTCACCTGGATCCGATCACGAAGATACACAATGGCTCAGtgttcactAAGAACCTGTGCAGTCAGATGTCTGCTGTGAGTGGTCCCCTGCTGCAGTGGCTGGAGGACCGTTTGGAGCAGAACAGACAGAGCGTCATTGAGCTGCAGCTGGATAAGGAGAGACTAACTCAGGAGCTGGCAACCATGTGAGAGAGAAAGGACATTGCACAGCTGTGAATCCATTTGCTCCATGAGGGACCACCATCCTGTCTGCGGGACATAGAAGGCTTCCGCTCCACAGCTGATCCATGGTGGAGGCACTATCATGGAGGCCAGCTGCAATAGCTTGCTTACAAACGTGTTTACATATCATAACAACAGATTTCATAGACACTGTATGTTGTCAAAGGAGGTCTTACCCATTTTTACAGTATATCATGACTTGTTAAAGTGCCCTTGGCTGTCTGAAATGCAAAGTATTACAACATTACAATCTCAAGATAAAGAACATACGCTGTAAGGAGGCTACTTGTTTACATTTCATTACCACATCCAACATCCCATATTCAGTGGGATGGTAAAACTGCATAGggcctccctttctccctttatAAAATCACCATGGTAGCTCTCTGACCCAACAGGGAGGAGAGTTAAACGAAAAAGAAGACACTGCTTTTATGAGGGAAATTTAGCCATAAATGAGAGCGGGTGTGAACACAGAGGTACCCTGATGGGGAGGAGAGTCAGAGAGTTCATGGTAGCAGTTATAGCCTCAATCCAGCCAATAATGATTCAACACTGATTGGGGCCTAAGTCTCAGGCTGCAAAATAATTGGGGAAATGTTGTATAGCAAGAAAGCAAACAAACAACAAACTTTGAACCATTTGTCATCTTCTGTTTCGATCTTCTTTCAAAATAAATACAGTGGGCCCTGAGGGACCAATAAAAACTGCACAAAGAGAGACACTCTGTGAGAAACCCAAGCACATTAAAGAGATTTTCTGGAAGTTTcatataatttcagccagtagttttgaaagtacaGATCAAGAGCCAAAACGGCTCCccgaaaatgttgcacaattgtGTACAACCCCATCATGTCATTGTTCTCAAGCCTCTGTAGCGTGTGCCCAAAGAGATAAAAAAAACTATATGGTGTTCCTGTGGTGTCCATGTTGGGTGTGTATGTTAGTCTCACCCCATGCAACCTCTTTGGACAACACTGGGCCGACCTGATCCCCGCCTCCCATTTTAACCTGGCAAACTCATTGGACATCATTCCACTTGCCAATCAATATTGTCTATCACGTTTGATTGTTGCAGGCTAGTTCCTGACTTTCCGTAGTTGCAAGTATGGTCTCATCAGACTAGTACGGCAAACAAGCAAGTGAATGTGATTATGTATTTTTATACAATGGAAAAGTTATAGTTATATGTTTGCATTACATTTCCTATTCCTTGAAAGTTGTGTATTGATTATATATAGCATTTGCCTACATGATGAATGATGATCGCTGGAAATCAATTGCAATGTTGGATTATGACCCCATACCTGTATAAAAACAAATATGGCTGTCtatcaataatgacaaaacacCTGGCACTGAAGGCGGTGTAGCCTGATGACTCAGGATTATGCATGTCAGCTGCAACAGCAAGTAAAATCATTGCCACCCTTAA
>XM_036967947.1
CCCATGGAATAATCCGCCTCCTTGCAAAACCGTACTGTTATTGATGTAACACACGCTTTGATAAGGAGTAGATAGTTAACTCTAGTTTGTGGAGTTTGATAAATAGCTAGCTATAACATGGCAGTGAGCGCAGTTCACCTCGAATCAGATGCCTTTTTGGTTTGCATGAATCATGCATTAAGTACCGAGAAGGAGGAAGTAATGGGACTCTGCATCGGAGAGGTGGACACCAACCGCATCGTCCACATTCACTCTGTTATTATTCTGCGACGCTCAGACAAGAGGAAGGATCGCGTGGAAATCTCGCCTGAGCAGCTATCTTCAGCTGCTACCGAAGCTGAGAGGTTGGCTGATATGACTGGACGGCCGATGCGTGTAGTTGGTTGGTACCACTCTCACCCCCACATCACTGTGTGGCCATCACATGTGGGTAAGAACCAGAGCACCCCTCTACCACATCAGTTCCACAACTTTAGTTTTCACTGTCATGGCAAACTGTTTCAGTTGGTGTGTCTGCGTCATTCATTTTCTACAACAGATGTAAGGACACAGGCCATGTACCAAATGATGGACCAGGGCTTTGTTGGGCTGATATTCTCCTGTTTCATTGAGGATAAGAACACAAAAACTGGTCGAGTTCTCTACACCTGCTTCCAGTCTGTACAAGCCCAGAAAGGCTCTGAGTACGAGAGAATCGAGATCCCAATTCATGTGGTCCCGCATGAGGCCATTGGGAAAGTGTGCCTTGAATCAGCAGTAGAGCTCCCAAGAATCCTCTGCCAGGAAGAGCAGGATACCTACAGAAAGATTCACAGCTTAACTCACCTGGATCCGATCACGAAGATACACAATGGCTCAGtgttcactAAGAACCTGTGCAGTCAGATGTCTGCTGTGAGTGGTCCCCTGCTGCAGTGGCTGGAGGACCGTTTGGAGCAGAACAGACAGAGCGTCATTGAGCTGCAGCTGGATAAGGAGAGACTAACTCAGGAGCTGGCAACCATGTGAGAGAGAAAGGACATTGCACAGCTGTGAATCCATTTGCTCCATGAGGGACCACCATCCTGTCTGCGGGACATAGAAGGCTTCCGCTCCACAGCTGATCCATGGTGGAGGCACTATCATGGAGGCCAGCTGCAATAGCTTGCTTACAAACGTGTTTACATATCATAACAACAGATTTCATAGACACTGTATGTTGTCAAAGGAGGTCTTACCCATTTTTACAGTATATCATGACTTGTTAAAGTGCCCTTGGCTGTCTGAAATGCAAAGTATTACAACATTACAATCTCAAGATAAAGAACATACGCTGTAAGGAGGCTACTTGTTTACATTTCATTACCACATCCAACATCCCATATTCAGTGGGATGGTAAAACTGCATAGggcctccctttctccctttatAAAATCACCATGGTAGCTCTCTGACCCAACAGGGAGGAGAGTTAAACGAAAAAGAAGACACTGCTTTTATGAGGGAAATTTAGCCATAAATGAGAGCGGGTGTGAACACAGAGGTACCCTGATGGGGAGGAGAGTCAGAGAGTTCATGGTAGCAGTTATAGCCTCAATCCAGCCAATAATGATTCAACACTGATTGGGGCCTAAGTCTCAGGCTGCAAAATAATTGGGGAAATGTTGTATAGCAAGAAAGCAAACAAACAACAAACTTTGAACCATTTGTCATCTTCTGTTTCGATCTTCTTTCAAAATAAATACAGTGGGCCCTGAGGGACCAATAAAAACTGCACAAAGAGAGACACTCTGTGAGAAACCCAAGCACATTAAAGAGATTTTCTGGAAGTTTcatataatttcagccagtagttttgaaagtacaGATCAAGAGCCAAAACGGCTCCccgaaaatgttgcacaattgtGTACAACCCCATCATGTCATTGTTCTCAAGCCTCTGTAGCGTGTGCCCAAAGAGATAAAAAAAACTATATGGTGTTCCTGTGGTGTCCATGTTGGGTGTGTATGTTAGTCTCACCCCATGCAACCTCTTTGGACAACACTGGGCCGACCTGATCCCCGCCTCCCATTTTAACCTGGCAAACTCATTGGACATCATTCCACTTGCCAATCAATATTGTCTATCACGTTTGATTGTTGCAGGCTAGTTCCTGACTTTCCGTAGTTGCAAGTATGGTCTCATCAGACTAGTACGGCAAACAAGCAAGTGAATGTGATTATGTATTTTTATACAATGGAAAAGTTATAGTTATATGTTTGCATTACATTTCCTATTCCTTGAAAGTTGTGTATTGATTATATATAGCATTTGCCTACATGATGAATGATGATCGCTGGAAATCAATTGCAATGTTGGATTATGACCCCATACCTGTATAAAAACAAATATGGCTGTCtatcaataatgacaaaacacCTGGCACTGAAGGCGGTGTAGCCTGATGACTCAGGATTATGCATGTCAGCTGCAACAGCAAGTAAAATCATTGCCACCCTTAA
>XM_036967948.1
ACCCATGGAATAATCCGCCTCCTTGCAAAACCGTACTGTTATTGATGTAACACACGCTTTGATAAGGAGTAGATAGTTAACTCTAGTTTGTGGAGTTTGATAAATAGCTAGCTATAACATGGCAGTGAGCGCAGTTCACCTCGAATCAGATGCCTTTTTGGTTTGCATGAATCATGCATTAAGTACCGAGAAGGAGGAAGTAATGGGACTCTGCATCGGAGAGGTGGACACCAACCGCATCGTCCACATTCACTCTGTTATTATTCTGCGACGCTCAGACAAGAGGAAGGATCGCGTGGAAATCTCGCCTGAGCAGCTATCTTCAGCTGCTACCGAAGCTGAGAGGTTGGCTGATATGACTGGACGGCCGATGCGTGTAGTTGGTTGGTACCACTCTCACCCCCACATCACTGTGTGGCCATCACATGTGGGTAAGAACCAGAGCACCCCTCTACCACATCAGTTCCACAACTTTAGTTTTCACTGTCATGGCAAACTGTTTCAGTTGGTGTGTCTGCGTCATTCATTTTCTACAACAGATGTAAGGACACAGGCCATGTACCAAATGATGGACCAGGGCTTTGTTGGGCTGATATTCTCCTGTTTCATTGAGGATAAGAACACAAAAACTGGTCGAGTTCTCTACACCTGCTTCCAGTCTGTACAAGCCCAGAAAGGCTCTGAGTACGAGAGAATCGAGATCCCAATTCATGTGGTCCCGCATGAGGCCATTGGGAAAGTGTGCCTTGAATCAGCAGTAGAGCTCCCAAGAATCCTCTGCCAGGAAGAGCAGGATACCTACAGAAAGATTCACAGCTTAACTCACCTGGATCCGATCACGAAGATACACAATGGCTCAGtgttcactAAGAACCTGTGCAGTCAGATGTCTGCTGTGAGTGGTCCCCTGCTGCAGTGGCTGGAGGACCGTTTGGAGCAGAACAGACAGAGCGTCATTGAGCTGCAGCTGGATAAGGAGAGACTAACTCAGGAGCTGGCAACCATGTGAGAGAGAAAGGTGTCAAAGGAGATGACTCATTCACTCTCTGATTACTTGTAGTTATGGATGTTTTCATGAGTTTATggaaatgtacagtgcatttgggaaatattcagaccactttttccacattttgttatgttacaaccttattctaaaatgtattaaataaatatttttcctcaatatacacccaataccccataatgacagtgaaaactgttttttagagatgttagcaaatgtattacaaataaaaacagaaatacct

Function

symbol description
brcc3 Predicted to enable metallopeptidase activity; polyubiquitin modification-dependent protein binding activity; and thiol-dependent deubiquitinase. Acts upstream of or within angiogenesis. Predicted to be located in cytoplasm; nucleus; and spindle pole. Predicted to be part of BRCA1-A complex and BRISC complex. Is expressed in axial vasculature and head. Orthologous to human BRCC3 (BRCA1/BRCA2-containing complex subunit 3).

NR:

description
lys-63-specific deubiquitinase BRCC36

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0070537 histone H2A K63-linked deubiquitination biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0006508 proteolysis biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0070552 BRISC complex cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K11864 BRCC3, BRCC36; BRCA1/BRCA2-containing complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591165.2 False 2372 mRNA 0.44 9 29050769 29098142
XM_036967947.1 False 2485 mRNA 0.44 8 29050769 29098147
XM_036967948.1 True 1271 mRNA 0.45 8 29093997 29098148

Neighbor

gene id symbol gene type direction distance location
LOC110509937 LOC106563397 coding downstream 306744 28698895 ~ 28744025 (-)
LOC110509936 LOC106563400 coding downstream 363276 28683308 ~ 28687493 (-)
LOC110509934 LOC106563394 coding downstream 401036 28633897 ~ 28649733 (-)
LOC110509932 LOC106563391 coding downstream 444564 28592328 ~ 28606205 (-)
trnal-uag-55 NA coding downstream 458686 28592002 ~ 28592083 (-)
LOC110509943 fundc2 coding upstream 3920 29102068 ~ 29110664 (-)
LOC118945312 NA coding upstream 15620 29113768 ~ 29124286 (-)
LOC110509945 LOC106563512 coding upstream 79247 29177395 ~ 29273565 (-)
kif4 LOC106563510 coding upstream 116711 29214859 ~ 29235365 (-)
mrps12 LOC106563509 coding upstream 137355 29235503 ~ 29237152 (-)
G2172679 LOC106563399 non-coding downstream 71796 28973634 ~ 28978973 (-)
G2172412 NA non-coding downstream 231823 28818384 ~ 28818946 (-)
G2172407 NA non-coding downstream 234555 28815839 ~ 28816214 (-)
G2172402 NA non-coding downstream 239071 28811489 ~ 28811698 (-)
G2172397 NA non-coding downstream 240653 28809898 ~ 28810116 (-)
G2172876 NA non-coding upstream 72019 29170167 ~ 29173584 (-)
G2172881 NA non-coding upstream 77281 29175429 ~ 29175653 (-)
G2173149 NA non-coding upstream 148822 29246970 ~ 29274110 (-)
G2173139 dipa non-coding upstream 181224 29279372 ~ 29280854 (-)
G2172414 NA other downstream 230260 28819750 ~ 28820509 (-)
LOC110509931 mpp1 other downstream 473804 28561162 ~ 28576997 (-)
LOC110509923 LOC105024622 other downstream 787980 28256809 ~ 28265547 (-)
G2171619 NA other downstream 1113956 27935454 ~ 27936813 (-)
G2171531 NA other downstream 1290067 27757983 ~ 27760702 (-)
G2173258 LOC106563498 other upstream 326575 29424723 ~ 29427867 (-)
G2174066 NA other upstream 846317 29944465 ~ 29945418 (-)
G2174100 NA other upstream 877215 29975363 ~ 29977567 (-)
LOC110510010 requ other upstream 1201467 30299615 ~ 30312873 (-)
G2174463 NA other upstream 1574442 30672590 ~ 30673101 (-)

Expression


Co-expression Network