LOC110509943 (fundc2)


Basic Information

Item Value
gene id LOC110509943
gene name fundc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29102068 ~ 29110664 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591170.2
TGCAGTCAGCCGTACATGGAGAATGTCTCTCTTCTTCTACTAGGCCAGTTTTCTGCTCCGTCACGTGATATTGCGGATGGGCTCTCGATTCAAATCCGGGTTGAAACGAAGTGACTTGAGAAAAAATGGCCGAGAAGAAGAAAGATAAGAGTGAGGAGGTGGTAGAGTATCTTCTAGATAAGAGTGAAGAGGTGGTAGACTATGCCAAGAAACAGAGATGGTGGAACAAAGTTTTTGGCAAGAACTCTGGGCCAGTAGCAGAGAAGTATGATGTTGCCACCCAGCTTGCCATTGGTGGAGTGTCTGGCTGGTGTGCTGGGTATTTGTTCCAGAAAGTTGGAAAGCTGGCGGCTTCAGCAGTGGGTGGAGGCTTCTTTTTGCTTCAGATTGCCAACCACACAGGGTACATCAAAGTGGACTGGAAGAGAGTGGAGCGTGATGTAAACAAGGCCAAGAAGCAGCTGAAGTTGAATACAGAAAAGCCCAGTAAGGAAGTCAGGACAAAAGTGGATGAGGTGCAGACATTTGTGAAGAAGAATATTGTCCTCACAGGAGGTTTTGCTGGTGGATTTCTGCTGGGCTTGGCCTCCTAAATCTACAAATTAATCTCTTTATTTAATATTGTGTCAAATACAAGGCTGAAAAAAAGCTTAAACCTAACCAGCTATCTAGATATGCAAGTAGACTACATATCAATAATATGTCAAACTGTAACTCATAGGCTTGATGTGTGTTGTTGGGCTCATGAGAATGCGTCCAATTGAAAACACAACCATTTAAAAAACTATGTTTATCATTGAGGCTTATGCATGACCTATTTAATTTATTATTACATTTTCCTATGCATTATTCTGGTATAATACAGTACTTATTTGAGATATGGTTTGAAATCCACCAAAATATGTCTACCTGGATACATGTAAATGCATTCTGTCAGATGGAACTGGAGCAAAGCCCTTTTAACTTGTTTTCCCTAATTTGGGATTTGTTTAGTAATATCCTTCATTTTCTAAATTGTTAAGATCAAggttgtatgtgtgtttatgttccTTCAAACCAAAGGGTCTGCGTTACAAACAGAAATACATGTGTGAGTAAGTACTGTACAAGGGGACTAAGAGGCTGCAGTAACACAAGTTTGAATGGTATTAGACATCATATTTTCTTACCTAAAATTCCAAAGTGTAATTCAAGGACAATCATGGTGTGTGCATGTTAATCATCCCAAATAGTAGTGACTTATTTACCAGTGGATGAGGATGCGTGTCAAGTTCTTACTTGAGACCAGGGAGTTAGAAAGCCAGACTGGACATATCTGGCGTTCTAAATCCCTGCTTGAGACTGAGGTCTGAGTCAGATTTGTTTGCAAGTACAGATTGTGTTGATTTAAAGTTGCATGATCAAAAGCTGCCGCACAGCATACAAGAGTCCAGTGTATTTACAAATGACTAAGGACAATTATGGAATGTACTGTAATACATGGAACATATCAATAAGCCTTTGGTAGAGAAcatgtgatgaggtaatgcactgATAGGAATGCAGGTTTGCTACAATTATTTCTCCAATGTTTATCCTCCTCAATGCAACCCTTACCCAATTACTTAGCAAAGTGTAAAATGTGCTGTTCAAAAGCTTCATAGTATTTTTTTCACCGTTTAAAATTCTATATTTTGTTACAAACAAAATGTAAAATTCTGGGAGAAGTAATAAAAAAGTGAACTGTCTTTTTAGAATGA

Function

symbol description
fundc2 Predicted to be involved in autophagy of mitochondrion. Predicted to be integral component of mitochondrial outer membrane. Orthologous to human FUNDC2 (FUN14 domain containing 2).

NR:

description
FUN14 domain-containing protein 1A-like

GO: NA

KEGG:

id description
K17986 FUNDC1; FUN14 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591170.2 True 1739 mRNA 0.39 5 29102068 29110664

Neighbor

gene id symbol gene type direction distance location
LOC110509941 brcc3 coding downstream 3920 29050769 ~ 29098148 (-)
LOC110509937 LOC106563397 coding downstream 358043 28698895 ~ 28744025 (-)
LOC110509936 LOC106563400 coding downstream 414575 28683308 ~ 28687493 (-)
LOC110509934 LOC106563394 coding downstream 452335 28633897 ~ 28649733 (-)
LOC110509932 LOC106563391 coding downstream 495863 28592328 ~ 28606205 (-)
LOC118945312 NA coding upstream 3104 29113768 ~ 29124286 (-)
LOC110509945 LOC106563512 coding upstream 66731 29177395 ~ 29273565 (-)
kif4 LOC106563510 coding upstream 104195 29214859 ~ 29235365 (-)
mrps12 LOC106563509 coding upstream 124839 29235503 ~ 29237152 (-)
LOC118945364 NA coding upstream 128264 29238928 ~ 29239768 (-)
G2172679 LOC106563399 non-coding downstream 123095 28973634 ~ 28978973 (-)
G2172412 NA non-coding downstream 283122 28818384 ~ 28818946 (-)
G2172407 NA non-coding downstream 285854 28815839 ~ 28816214 (-)
G2172402 NA non-coding downstream 290370 28811489 ~ 28811698 (-)
G2172397 NA non-coding downstream 291952 28809898 ~ 28810116 (-)
G2172876 NA non-coding upstream 59503 29170167 ~ 29173584 (-)
G2172881 NA non-coding upstream 64765 29175429 ~ 29175653 (-)
G2173149 NA non-coding upstream 136306 29246970 ~ 29274110 (-)
G2173139 dipa non-coding upstream 168708 29279372 ~ 29280854 (-)
G2172414 NA other downstream 281559 28819750 ~ 28820509 (-)
LOC110509931 mpp1 other downstream 525103 28561162 ~ 28576997 (-)
LOC110509923 LOC105024622 other downstream 839279 28256809 ~ 28265547 (-)
G2171619 NA other downstream 1165255 27935454 ~ 27936813 (-)
G2171531 NA other downstream 1341366 27757983 ~ 27760702 (-)
G2173258 LOC106563498 other upstream 314059 29424723 ~ 29427867 (-)
G2174066 NA other upstream 833801 29944465 ~ 29945418 (-)
G2174100 NA other upstream 864699 29975363 ~ 29977567 (-)
LOC110510010 requ other upstream 1188951 30299615 ~ 30312873 (-)
G2174463 NA other upstream 1561926 30672590 ~ 30673101 (-)

Expression


Co-expression Network