LOC118945312


Basic Information

Item Value
gene id LOC118945312
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29113768 ~ 29124286 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040460.1
CCTGACATCACAAACATAAGGCAACTAAATGTTTGAACTACTCTCTTCTGCAACCAAGGAAGTAACCTTTTTCATCTGATTCTTAGAATTCAGGGTCTAGTGAAGCAGGAAGGATGTGGAGCAATAAGCAGTGCTGCTGAGAGGCACCAAACGAGGGGTTCAGTGGAGACAGGTCCACACAAACCAGCAGGAAAACATGCAGCAAATTAGGCGATGCTGGTGCCTAGTTCTCCTGCAGAACTTTCCCATGCCGTCTGaagaagagaggtagaaagaTCGAAAGAGGCGGCGAAAACAGCTCTGCAGGATCAGGTACTGTGTAGGCTATTAGCTAAAGTAAGGCGCATTTTTGTACACACATCCCTAGAGGTTCCCTTACATTACTTAATGACAACAATCTGTTTTCTTTCTAGACGATACTGAAAACAAAATGCACGGCGAGCTGTGAACTGGGTATATAGTCTGTGTGTAATGCTGAAGGCTTGATGCATGGAAAGATATAATAGTTGTGATGACTTGTTGAGTAGTTATATATATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040460.1 True 539 mRNA 0.43 3 29113768 29124286

Neighbor

gene id symbol gene type direction distance location
LOC110509943 fundc2 coding downstream 3104 29102068 ~ 29110664 (-)
LOC110509941 brcc3 coding downstream 15620 29050769 ~ 29098148 (-)
LOC110509937 LOC106563397 coding downstream 369743 28698895 ~ 28744025 (-)
LOC110509936 LOC106563400 coding downstream 426275 28683308 ~ 28687493 (-)
LOC110509934 LOC106563394 coding downstream 464035 28633897 ~ 28649733 (-)
LOC110509945 LOC106563512 coding upstream 53109 29177395 ~ 29273565 (-)
kif4 LOC106563510 coding upstream 90573 29214859 ~ 29235365 (-)
mrps12 LOC106563509 coding upstream 111217 29235503 ~ 29237152 (-)
LOC118945364 NA coding upstream 114642 29238928 ~ 29239768 (-)
LOC110509949 LOC106563543 coding upstream 122902 29247188 ~ 29251878 (-)
G2172679 LOC106563399 non-coding downstream 134795 28973634 ~ 28978973 (-)
G2172412 NA non-coding downstream 294822 28818384 ~ 28818946 (-)
G2172407 NA non-coding downstream 297554 28815839 ~ 28816214 (-)
G2172402 NA non-coding downstream 302070 28811489 ~ 28811698 (-)
G2172397 NA non-coding downstream 303652 28809898 ~ 28810116 (-)
G2172876 NA non-coding upstream 45881 29170167 ~ 29173584 (-)
G2172881 NA non-coding upstream 51143 29175429 ~ 29175653 (-)
G2173149 NA non-coding upstream 122684 29246970 ~ 29274110 (-)
G2173139 dipa non-coding upstream 155086 29279372 ~ 29280854 (-)
G2172414 NA other downstream 293259 28819750 ~ 28820509 (-)
LOC110509931 mpp1 other downstream 536803 28561162 ~ 28576997 (-)
LOC110509923 LOC105024622 other downstream 850979 28256809 ~ 28265547 (-)
G2171619 NA other downstream 1176955 27935454 ~ 27936813 (-)
G2171531 NA other downstream 1353066 27757983 ~ 27760702 (-)
G2173258 LOC106563498 other upstream 300437 29424723 ~ 29427867 (-)
G2174066 NA other upstream 820179 29944465 ~ 29945418 (-)
G2174100 NA other upstream 851077 29975363 ~ 29977567 (-)
LOC110510010 requ other upstream 1175329 30299615 ~ 30312873 (-)
G2174463 NA other upstream 1548304 30672590 ~ 30673101 (-)

Expression


Co-expression Network