LOC110509961 (LOC106563497)


Basic Information

Item Value
gene id LOC110509961
gene name LOC106563497
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29437145 ~ 29441719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591201.2
AAAGCTGAAGTAAAGGTGCATGATTCATAATCATTGACATTTGGTACTTGGGATAGTCCAAAATAGAAATATGGCGATTGGGAGTCTACAATGATGCATTACACGGGCATAGGACAATGGCGACGTTAACAAGCCAGGATTCAACCGCTCAAGCGCGGGTTTATTTCCAAACGCCTCCCGGTACCGAGGATTCAGAAGTCGTCCAGAAGCAAGGCCGGGTAACCGTGAAATACGATAGAAAAGAGCTGAGGAAGCGACTCAATTTAGAGGAGTGGATAATTGAGCAGTTAACGGATTTATACGACTGTGAGGAGGAGGAGATTCCAGAGTTGGAGATTGATGTGGATGAGCTGTTGGATATGCCCACTGATGGAGACCGGGCATCCAGGGTCAAGGGTTTGCTGGTTGACTGTTACAAACCTACAGATGACTTTGTCGCGGCTCTCCTAGAGAAGGTTAAAGGTCTGCAGAAACTCAGCACTCCGCCCAAAAAGAATGAAAAATCTTCTCCTTAGCTTCAGAACACCCCCAACTGATTACAACTCAGTTCTACACAGGGACACCCAGCTAGAAACCCTCAGCACCTAGAATCCTTCCATCAGCAGGATTGGTAGAGGGAAGAAGATCGACCAATCAAATCTCTGCAGCAGGGATTACTATGTCTCTGTCTTTGTTAAAACTATTTGTGGATTTATAATCATGTTATACATATACAGTAGTAAGTGATGAGTGTTCAAATATCAGAATATAGTACAGCATTGATAAACTGatgacatggaggaagaacatgaCAACATTTAACTTGAGCTATAAGTCACCAACAAAGCATGACAAGTACATAAACCTCATGACAGCTCATAGTGAGTCATGACAGATGCAACTTTATGCAGTCTAACAAATGTAACTCTTTAGTTAGTTGATTAGTCAACATCACTGTATGTATAGTAACAGCTAGAAATAGTGAACTATCCTTGGTTGGTAATAGTTGGAGCCATGTCATTTTTACGATACTAGGATTTATAGAGAAGCAAAGTGTTACTCGAGAATGGTTTATTTGGGGAAACGTTAGGTAAGTCTGTGTAATGATTTCAAGCCGAGCACTGTCATCACCTGTCTAATATATTTTTTGAAAGGGAAGCATGAAGGGCTTTTCAACATTTCACACTGGACTACTGGGAGTGAACATTATGCTTTTTGTTACACCTTTGACATGAGCAAGTGTGGACAGTTATCAATGACAAACACCAGCATGCCACACAAGGCACTGTAATAACATCAGTAGCCTACGCGTTTTCATTGCGCACATTTTTTGTTAAATATACATTTTGGGAATAATGCATGACTGACtctataaaacacaggaaaacatTTGCAAATTAGGGTTAGAGCCCATTTAAATCCATGACATGAACTTTCACTACAGTGAATGCTTTTGAGTCCTACTATAACATATGGTTCAACTGTTTTCCCCTCCATATCCTCCACCCTGGTGCCTGAGAGTGACGGGGTGGGTCTGTTTCTCAGACCTGACCCAAGTAGATAAAAAGCTATATAAAGCGAAGGCCTTTCTACTTGTTTCTCAAACCCAAAACACTTAGTCATTAACCATACAGTAAGCACTGCGAAAAGGACTTCGGCCTTAGAAGACCACAGCAATGATTGTATCGACTATTGTGGATTAAGCAATGTCTTTGAAAAGTATGACAATTGGTCCTGCATTTCGCTGCGCCCGCATGTGTACACCTCATTACTATAATTCCTTAATCTTTTGGACCCCATTGAGATGTTATTTTGGGCAGGCTTTTAACTACCAGATTCGCAGTGCATCTCCTAGAACCTGCATCACGTTGAAGACTGAATCAAATCACGAACTGGGTTACTGCGTTAATTTAGAGTGCTGGAGGTACAGTAGGCGACTGCAtaatctgtggtgtgtgtgtttaagatGTGATTGCAAAACTGTAGTGACGTAATGTAGCAATACTTAATGGTGCTGTTTAACAATTtgttacatttttattaaaattCAATACGTGTTTTACCTA

Function

NR:

description
protein phosphatase 1 regulatory subunit 14B-like isoform X1

GO:

id name namespace
GO:0042325 regulation of phosphorylation biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17555 PPP1R14B; protein phosphatase 1 regulatory subunit 14B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591201.2 True 2045 mRNA 0.41 5 29437145 29441719
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Neighbor

gene id symbol gene type direction distance location
LOC110509960 LOC106563499 coding downstream 32268 29391110 ~ 29404877 (-)
LOC110509957 NA coding downstream 127982 29299023 ~ 29309163 (-)
tmem223 tmem223 coding downstream 154138 29281631 ~ 29283007 (-)
LOC110509950 LOC106563507 coding downstream 157776 29264379 ~ 29279369 (-)
LOC110509951 LOC106563508 coding downstream 172887 29256285 ~ 29264258 (-)
LOC110509404 LOC106563494 coding upstream 20860 29462579 ~ 29542571 (-)
LOC110509963 LOC106563491 coding upstream 131099 29572818 ~ 29575720 (-)
LOC110509405 LOC105010958 coding upstream 135085 29576804 ~ 29577864 (-)
LOC110509965 LOC106563488 coding upstream 140318 29582037 ~ 29608134 (-)
LOC110509971 gng3 coding upstream 221008 29662252 ~ 29665914 (-)
G2173259 NA non-coding downstream 7029 29428182 ~ 29430116 (-)
G2173191 NA non-coding downstream 112914 29323945 ~ 29324231 (-)
G2173189 NA non-coding downstream 114901 29322039 ~ 29322244 (-)
G2173185 NA non-coding downstream 131864 29304983 ~ 29305281 (-)
G2173326 LOC100136012 non-coding upstream 112005 29553724 ~ 29554127 (-)
G2173327 NA non-coding upstream 117134 29558853 ~ 29559057 (-)
G2173328 NA non-coding upstream 117510 29559229 ~ 29559447 (-)
G2173330 NA non-coding upstream 118931 29560650 ~ 29560869 (-)
G2173337 LOC100194703 non-coding upstream 136800 29578519 ~ 29578991 (-)
G2173258 LOC106563498 other downstream 9278 29424723 ~ 29427867 (-)
G2172414 NA other downstream 616636 28819750 ~ 28820509 (-)
LOC110509931 mpp1 other downstream 860180 28561162 ~ 28576997 (-)
LOC110509923 LOC105024622 other downstream 1174356 28256809 ~ 28265547 (-)
G2171619 NA other downstream 1500332 27935454 ~ 27936813 (-)
G2174066 NA other upstream 502746 29944465 ~ 29945418 (-)
G2174100 NA other upstream 533644 29975363 ~ 29977567 (-)
LOC110510010 requ other upstream 857896 30299615 ~ 30312873 (-)
G2174463 NA other upstream 1230871 30672590 ~ 30673101 (-)
G2174894 NA other upstream 1562036 31003755 ~ 31006435 (-)

Expression

LOC110509961(LOC106563497) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110509961(LOC106563497) Expression in each Bioproject

Bar chart with 21 bars.
LOC110509961(LOC106563497) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network