LOC110509974 (nxf1)


Basic Information

Item Value
gene id LOC110509974
gene name nxf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29677784 ~ 29697939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591227.2
ATTACCAGAGGGTCGTGAGCAAAGCGAGTTCGAAACCATTGCACATGCTCAGACGGCGGGGCCGTAAAGCTACATTGCATGTTACGAACAAAGCGAATGTCTTTGCTAACTATTCACGGACGATAAACGCACATTTGCTGTACATATAGAACTAACAATACCCACTATTATTGGAGTTACGTGGGTGTTCGGTTCCTGACTATGTCAACAGCCGACGATTCACGTTATAACGATCACGATGACCGAGTTGGAGGACAAAAGGTTCGCAACCGTAAAGGCAGAGGGCCTTTCAGGGCCCCTATGTATAGTGACCAGGGGCCAGTAGGGCCAAGACCAAGACATCGTGGTAGCCAAAGAGGCGGCGGCGGCCCGGGACCCAGAGCGCGATTCGACGATGAGGATGGAGATGTGGCAATGGCGGACAGCAACTCCCAAGATGGATCCTCCCAACACAGATTTAACCCTTATGGAAGACCAAATCGGCGTGGGGACGACCGATTTGACCGGGGCCgcagaggtggtggtggaggtcaCAGGGGTCGTGGGAATAACAAAGGAggggatggaggtggaggtggcCGCAAGAACTGGTTCAAGATGTCTGTCCCCTATGGAAAGAAATACGACAAAGACTGGCTGATAACAGCACTGCAGAATATCTGCTCCATGCCCTTCACCCCAGTACATTACCACGTAGAGGGAAACCGAGCAGAGTTCTTTATTGATGATTCCACGACTGCGAATGCCTTGTTTAAGGTATCACGGAAGATCACAGACAAAGAGGGCTACAAGGTGACTGTACTGATGAATCCCTGTCCTCCACCCTCCTTTCTTCAGTCTGAACTAAAGCCAGCTGATCTGGAGCACCTGAAGCAATGCATGGCTAAACGTTTTGATGGCTCTCAACAAGCGCTGGACTTGAACAACATCCGGATAGACCCAGACCTGGTGTCCCAGAACATTGATGTGACTTTGAACAGAAAGAACTCCATGCGTGCTGTTATTAAGATAATTGAGGAGAATATTCCAGAGCTTGTTTGTCTGAACCTTAGCAACAACAAGCTATTTAGGCTGGATGACCTGTCAGAGCTGGTCAACAAGGTTCCCAACCTGAAGACACTCAACCTTTCTCATAACGAGTTAAAGACAGAGCGCGAGCTGGACAGGATCAAGGGTCTTAAGCTGGTGGAGTTATGGCTGGAGAGGAACCCCCTTTGTGACTATTTCAAGGACCAGGCTTCATACATCAGCGAGGTGAGAGAGAGGTTCCCCAGGCTTCTCAAACTGGACGGTCAGGATCTCCCCCCGCCCATAGTCTTTGATGTGGAGGTGACTCCTGCCGCCCTTCCACCTTGCAAGCCCAGCTACTTCTGCTCTGAAGAGATCAAGACTCCCATCGTTGGCTTCCTACAACAatactacagtgtgtatgactCCGGAGACAGACAGCCTTTGTTAGATGCCTACCACGATGGAGCAACCTTCTCCTTGAGCATGCCCTTCACCATGCAGAACCCCTCCAGGTGCAGTCTTGGCGATTACCATAAAGACAGTCGCAACCTGAAAAAGCTCAAGGATCCCACCACACGATTCCGCTTACTGAAGCACACTCGTCTGAATGTGGTGGCTTTCCTGAGCGAACTGCCCAAAACGCAGCATGACACTGCATCTCTAATTGTGGACGTCAACACCTTCACCAACACATTACTGTCGTTCACGGTCACTGGAGTGTTCAAGGAAGTTGAAGGTAAATCCCGCGACTCTGTGAGAGCTTTCTGTCGGGTGTTTGTCACAGTGCCAGCTGGAGGGACAAGTCTTTGCATAGTGAATGACGAGCTGTTTGTGCGCAATGCTACGACTGAGGAGATCCGCCGGGCCTTTGTGGCACCTGcccccaccccatccagcagTCCTGTCCCCACCCTCTCAGCCCCCCAGCAAGAGATGCTCTCTGCCTTCTCACTCAAGTCCGGCATGAATCTTGAATGGTCCCAGAAGTGCCTACAGGACAATGAGTGGGATTTCAACCGAGCAGGGCAGGTCTTCACAGACCTCAAGGCTCATGGAAAGATCCCAGATGTCGCTTTCATAAAGTGAACAGGAATGGCTGTGAAGCTTTTTAATTATTGTCATTGGTCTTATTTCTGTTGATTCTTATGCAGTTATCCTCCTGGATTACAAGATAACATATACTTCATTATTTGTATAATTAAACATGATTTAACGTGTTCAAA

Function

symbol description
nxf1 Enables RNA binding activity. Involved in mRNA export from nucleus. Located in cytoplasm and nuclear speck. Colocalizes with transcription export complex.

NR:

description
nuclear RNA export factor 1-like

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14284 NXF, TAP, MEX67; nuclear RNA export factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591227.2 True 2234 mRNA 0.50 21 29677784 29697939

Neighbor

gene id symbol gene type direction distance location
LOC110509973 LOC106563482 coding upstream 2698 29666670 ~ 29675086 (+)
LOC110509970 LOC106563483 coding upstream 15548 29652518 ~ 29662236 (+)
LOC110509969 LOC106563485 coding upstream 32313 29638568 ~ 29645471 (+)
LOC110509968 LOC106563486 coding upstream 40291 29633391 ~ 29637493 (+)
LOC110509967 LOC106563487 coding upstream 53504 29610727 ~ 29624280 (+)
LOC110509406 NA coding downstream 41838 29739663 ~ 29740669 (+)
LOC118945359 LOC106590264 coding downstream 124501 29822440 ~ 29825694 (+)
cnih2 LOC106563472 coding downstream 146281 29844220 ~ 29859442 (+)
LOC110509988 tmem261 coding downstream 171152 29869091 ~ 29874237 (+)
znhit2 znhit2 coding downstream 188350 29886289 ~ 29888742 (+)
G2173364 NA non-coding upstream 25558 29652014 ~ 29652226 (+)
G2173363 NA non-coding upstream 25798 29651330 ~ 29651986 (+)
G2173109 NA non-coding upstream 45552 29626559 ~ 29632232 (+)
G2173120 NA non-coding upstream 69939 29606747 ~ 29607845 (+)
G2173388 NA non-coding downstream 23245 29721184 ~ 29722775 (+)
G2173401 NA non-coding downstream 45321 29743260 ~ 29743543 (+)
G2173403 NA non-coding downstream 47606 29745545 ~ 29745880 (+)
G2173407 LOC105010961 non-coding downstream 54344 29752283 ~ 29752540 (+)
G2173114 NA other upstream 90312 29585594 ~ 29587472 (+)
G2173098 NA other upstream 117825 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 998107 28678848 ~ 28681351 (+)
gigyf1b LOC105024601 other upstream 1364633 28277874 ~ 28313151 (+)
G2173551 vps51 other downstream 196155 29894094 ~ 29896279 (+)
LOC110509998 LOC106563463 other downstream 254598 29952492 ~ 29956193 (+)
G2173675 NA other downstream 438784 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 621709 30319648 ~ 30323615 (+)

Expression


Co-expression Network