Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110509406 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048593.1 |
| NCBI id | CM023247.2 |
| chromosome length | 47748341 |
| location | 29739663 ~ 29740669 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| hatching enzyme, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110509406 | False | 538 | mRNA | 0.43 | 4 | 29739777 | 29740669 |
| TU2484007 | True | 206 | lncRNA | 0.51 | 1 | 29739663 | 29739868 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110509974 | nxf1 | coding | upstream | 41838 | 29677784 ~ 29697939 (+) |
| LOC110509973 | LOC106563482 | coding | upstream | 64691 | 29666670 ~ 29675086 (+) |
| LOC110509970 | LOC106563483 | coding | upstream | 77541 | 29652518 ~ 29662236 (+) |
| LOC110509969 | LOC106563485 | coding | upstream | 94306 | 29638568 ~ 29645471 (+) |
| LOC110509968 | LOC106563486 | coding | upstream | 102284 | 29633391 ~ 29637493 (+) |
| LOC118945359 | LOC106590264 | coding | downstream | 81771 | 29822440 ~ 29825694 (+) |
| cnih2 | LOC106563472 | coding | downstream | 103551 | 29844220 ~ 29859442 (+) |
| LOC110509988 | tmem261 | coding | downstream | 128422 | 29869091 ~ 29874237 (+) |
| znhit2 | znhit2 | coding | downstream | 145620 | 29886289 ~ 29888742 (+) |
| LOC110509993 | slc25a45 | coding | downstream | 174188 | 29914857 ~ 29925677 (+) |
| G2173388 | NA | non-coding | upstream | 17002 | 29721184 ~ 29722775 (+) |
| G2173364 | NA | non-coding | upstream | 87551 | 29652014 ~ 29652226 (+) |
| G2173363 | NA | non-coding | upstream | 87791 | 29651330 ~ 29651986 (+) |
| G2173109 | NA | non-coding | upstream | 107545 | 29626559 ~ 29632232 (+) |
| G2173401 | NA | non-coding | downstream | 2591 | 29743260 ~ 29743543 (+) |
| G2173403 | NA | non-coding | downstream | 4876 | 29745545 ~ 29745880 (+) |
| G2173407 | LOC105010961 | non-coding | downstream | 11614 | 29752283 ~ 29752540 (+) |
| G2173408 | NA | non-coding | downstream | 14388 | 29755057 ~ 29755349 (+) |
| G2173417 | NA | non-coding | downstream | 24846 | 29765515 ~ 29766999 (+) |
| G2173114 | NA | other | upstream | 152305 | 29585594 ~ 29587472 (+) |
| G2173098 | NA | other | upstream | 179818 | 29559570 ~ 29559959 (+) |
| LOC110509373 | LOC106563396 | other | upstream | 1060100 | 28678848 ~ 28681351 (+) |
| gigyf1b | LOC105024601 | other | upstream | 1426626 | 28277874 ~ 28313151 (+) |
| G2173551 | vps51 | other | downstream | 153425 | 29894094 ~ 29896279 (+) |
| LOC110509998 | LOC106563463 | other | downstream | 211868 | 29952492 ~ 29956193 (+) |
| G2173675 | NA | other | downstream | 396054 | 30136723 ~ 30137320 (+) |
| G2173754 | LOC106563449 | other | downstream | 578979 | 30319648 ~ 30323615 (+) |
