cnih2 (LOC106563472)


Basic Information

Item Value
gene id cnih2
gene name LOC106563472
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29844220 ~ 29859442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967933.1
ggtagagagagaaaaagggagcagagggaggggtagaTAGAGACAAACAAGGGAAGCcaacaaaaaaatatttggaGCTTCCCCTGCCCCCTCAACCATCTCTGGGGAACAAGGGAATACGGCAACGGTTCAAAGCCAGGGATAGAgggaccgagagagaaagagagagagagaaagagggagggagagactgttGAATGCACTTGGCCGGTATATTCTAGGGTGATCCAAATCTTGCTTTATCAGACCgtctgagagagagaagaagagactgaGGAGGACAGAACATGAGGGAGAGTCTTTCTTGGTCTGTTTTCAAAATCGTTCCATTCTTTtttagagaaagagaagagaaaacatAAGGGGGAGCTTTGGAGAGAGAAAAGCGAAAGAGGATGGAGGGGGACATGAAAAAGAGGGGAATTAAGGAACTTAGAGACTTCTAAGGGCTGTGGAGATGTTTTGCCTTTCTTAAGAAAAAAGACTTGCACCCAAATAAGagcaaaaaatgttttaacatCTAAACATAGTTGATTCTCTAAATGCTGTTTTTCCACCCTGCAAGTGAGCACTGAAAAGCATATGCGTGAAGAAATCTGATGGACGCGACTGAGATAGATAGAGAAAGGCAAGGAAGAGAATTCTGACATGGTGTCGACCCAAATTGACAGAGTGGGAAGAGGAAGGAGTTGGATATTCAGTGATAGACGCATCTGCCACCAAACACAGATTATTGCGTTTGATGAGCTGTGCACAGACTTCAAGAACCCAATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATTCTGAATATTGAAAGAATCTGCAACTTGCTGCGGAAGCTGGTGGTGCCAGAGTACTCCATACATGGGCTGTTCTGCCTGATGTTCATGTGTGCTGGGGAGTGGGTCACCCTGGGCCTAAACATCCCCCTGCTCTTCTACCATCTCTGGAGgtTTTTCCATCGGCCGGCAGATGGGTCAGAGGTAATGTATGACCCTGTCAGTGTGATGAATGCAGACATCCTGAACTACTGTCAGAAGGAGTCCTGGTGTAAGCTGGGCTTCTACCTGCTCTCCTTCTTCTACTACCTGTACAGTATGGTCTACGGCTTGGTGAGTTTCTAAACACAGAATAGAAGACAAAACGACAAAGAGGAGATTGAAAGACAGTAAAAGAGACAGAGCATGCAAGACTAAGACTGGGTGATGTCACTCACCCTTCTTTCTCACCACCCATTACTCCATCACAGACCCTGTTTTGCTCTCCTCAAATCTTTGGATGGAGGGACAAACATCGGAGGACATCGTGAGGAAATTAGGCAAAGTAAAGATACTTTTTTGAGGCTGCTCAGACACTGCCGAG
>XM_036967931.1
gagagagaaaaagggagcagagggaggggtagaTAGAGACAAACAAGGGAAGCcaacaaaaaaatatttggaGCTTCCCCTGCCCCCTCAACCATCTCTGGGGAACAAGGGAATACGGCAACGGTTCAAAGCCAGGGATAGAgggaccgagagagaaagagagagagagaaagagggagggagagactgttGAATGCACTTGGCCGGTATATTCTAGGGTGATCCAAATCTTGCTTTATCAGACCgtctgagagagagaagaagagactgaGGAGGACAGAACATGAGGGAGAGTCTTTCTTGGTCTGTTTTCAAAATCGTTCCATTCTTTtttagagaaagagaagagaaaacatAAGGGGGAGCTTTGGAGAGAGAAAAGCGAAAGAGGATGGAGGGGGACATGAAAAAGAGGGGAATTAAGGAACTTAGAGACTTCTAAGGGCTGTGGAGATGTTTTGCCTTTCTTAAGAAAAAAGACTTGCACCCAAATAAGagcaaaaaatgttttaacatCTAAACATAGTTGATTCTCTAAATGCTGTTTTTCCACCCTGCAAGTGAGCACTGAAAAGCATATGCGTGAAGAAATCTGATGGACGCGACTGAGATAGATAGAGAAAGGCAAGGAAGAGAATTCTGACATGGTGTCGACCCAAATTGACAGAGTGGGAAGAGGAAGGAGTTGGATATTCAGTGATAGACGCATCTGCCACCAAACACAGTCCAGTGTGTCAGGTAGTCACTTACTAGCTGTGTCACTGTGAGCAAGGTGTGTGGATATTGTGCAAAGTGGAGGTTACTGGAAGGGGGAGGGGACAGACACAAAGTGCACAAAACCCCTGTCTAGAATCAGAGGAGGCTGGGACCAGAGGAAAGAGCATTACTCAGCTGTAGCTGTTCTCCATGAATAACTGTGCCTGTTGACCGCTTTGCAAATTGTATGTGTGACAGAGAAGAAAATATTTTGCACAGACTCATGAAAAGGAAAGAGGAACTCAAGCAGAAGGAGCAACCTAGAtaagcagaaatagagagaccACAGCTGATAGACTGGAGAGTGGAGCAGGGATTTTTTCTTCCAACACAGTACTTCAGCTCCTCACCTGGACAATTTGGGCTCTCAATACAACGTAAGAGGGGAAGGGAGTCAGAGAGTCAAGGGCAGGGAGTGGAAGAACAGACAAAAACCTCCTGAGGAAGGAGAGATAGTcatcaatagagagagagaggaggggaagttcCCCCTCTCTCGACCCAACTCGTTGTCAGGCTGGCTGACACAGCCATGGCGTTCACCTTCGCGGCCTTCTGCTACATGCTCACCTTAGTGCTGTGTGCCGCACTCATCTTCTTCGTCATCTGGCAGATTATTGCGTTTGATGAGCTGTGCACAGACTTCAAGAACCCAATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATTCTGAATATTGAAAGAATCTGCAACTTGCTGCGGAAGCTGGTGGTGCCAGAGTACTCCATACATGGGCTGTTCTGCCTGATGTTCATGTGTGCTGGGGAGTGGGTCACCCTGGGCCTAAACATCCCCCTGCTCTTCTACCATCTCTGGAGgtTTTTCCATCGGCCGGCAGATGGGTCAGAGGTAATGTATGACCCTGTCAGTGTGATGAATGCAGACATCCTGAACTACTGTCAGAAGGAGTCCTGGTGTAAGCTGGGCTTCTACCTGCTCTCCTTCTTCTACTACCTGTACAGTATGGTCTACGGCTTGGTGAGTTTCTAAACACAGAATAGAAGACAAAACGACAAAGAGGAGATTGAAAGACAGTAAAAGAGACAGAGCATGCAAGACTAAGACTGGGTGATGTCACTCACCCTTCTTTCTCACCACCCATTACTCCATCACAGACCCTGTTTTGCTCTCCTCAAATCTTTGGATGGAGGGACAAACATCGGAGGACATCGTGAGGAAATTAGGCAAAGTAAAGATACTTTTTTGAGGCTGCTCAGACACTGCCGAG
>XM_036967932.1
gagagagaaaaagggagcagagggaggggtagaTAGAGACAAACAAGGGAAGCcaacaaaaaaatatttggaGCTTCCCCTGCCCCCTCAACCATCTCTGGGGAACAAGGGAATACGGCAACGGTTCAAAGCCAGGGATAGAgggaccgagagagaaagagagagagagaaagagggagggagagactgttGAATGCACTTGGCCGGTATATTCTAGGGTGATCCAAATCTTGCTTTATCAGACCgtctgagagagagaagaagagactgaGGAGGACAGAACATGAGGGAGAGTCTTTCTTGGTCTGTTTTCAAAATCGTTCCATTCTTTtttagagaaagagaagagaaaacatAAGGGGGAGCTTTGGAGAGAGAAAAGCGAAAGAGGATGGAGGGGGACATGAAAAAGAGGGGAATTAAGGAACTTAGAGACTTCTAAGGGCTGTGGAGATGTTTTGCCTTTCTTAAGAAAAAAGACTTGCACCCAAATAAGagcaaaaaatgttttaacatCTAAACATAGTTGATTCTCTAAATGCTGTTTTTCCACCCTGCAAGTGAGCACTGAAAAGCATATGCGTGAAGAAATCTGATGGACGCGACTGAGATAGATAGAGAAAGGCAAGGAAGAGAATTCTGACATGGTGTCGACCCAAATTGACAGAGTGGGAAGAGGAAGGAGTTGGATATTCAGTGATAGACGCATCTGCCACCAAACACAGACTCATGAAAAGGAAAGAGGAACTCAAGCAGAAGGAGCAACCTAGAtaagcagaaatagagagaccACAGCTGATAGACTGGAGAGTGGAGCAGGGATTTTTTCTTCCAACACAGTACTTCAGCTCCTCACCTGGACAATTTGGGCTCTCAATACAACGTAAGAGGGGAAGGGAGTCAGAGAGTCAAGGGCAGGGAGTGGAAGAACAGACAAAAACCTCCTGAGGAAGGAGAGATAGTcatcaatagagagagagaggaggggaagttcCCCCTCTCTCGACCCAACTCGTTGTCAGGCTGGCTGACACAGCCATGGCGTTCACCTTCGCGGCCTTCTGCTACATGCTCACCTTAGTGCTGTGTGCCGCACTCATCTTCTTCGTCATCTGGCAGATTATTGCGTTTGATGAGCTGTGCACAGACTTCAAGAACCCAATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATTCTGAATATTGAAAGAATCTGCAACTTGCTGCGGAAGCTGGTGGTGCCAGAGTACTCCATACATGGGCTGTTCTGCCTGATGTTCATGTGTGCTGGGGAGTGGGTCACCCTGGGCCTAAACATCCCCCTGCTCTTCTACCATCTCTGGAGgtTTTTCCATCGGCCGGCAGATGGGTCAGAGGTAATGTATGACCCTGTCAGTGTGATGAATGCAGACATCCTGAACTACTGTCAGAAGGAGTCCTGGTGTAAGCTGGGCTTCTACCTGCTCTCCTTCTTCTACTACCTGTACAGTATGGTCTACGGCTTGGTGAGTTTCTAAACACAGAATAGAAGACAAAACGACAAAGAGGAGATTGAAAGACAGTAAAAGAGACAGAGCATGCAAGACTAAGACTGGGTGATGTCACTCACCCTTCTTTCTCACCACCCATTACTCCATCACAGACCCTGTTTTGCTCTCCTCAAATCTTTGGATGGAGGGACAAACATCGGAGGACATCGTGAGGAAATTAGGCAAAGTAAAGATACTTTTTTGAGGCTGCTCAGACACTGCCGAG
>XM_036967930.1
gagagagaaaaagggagcagagggaggggtagaTAGAGACAAACAAGGGAAGCcaacaaaaaaatatttggaGCTTCCCCTGCCCCCTCAACCATCTCTGGGGAACAAGGGAATACGGCAACGGTTCAAAGCCAGGGATAGAgggaccgagagagaaagagagagagagaaagagggagggagagactgttGAATGCACTTGGCCGGTATATTCTAGGGTGATCCAAATCTTGCTTTATCAGACCgtctgagagagagaagaagagactgaGGAGGACAGAACATGAGGGAGAGTCTTTCTTGGTCTGTTTTCAAAATCGTTCCATTCTTTtttagagaaagagaagagaaaacatAAGGGGGAGCTTTGGAGAGAGAAAAGCGAAAGAGGATGGAGGGGGACATGAAAAAGAGGGGAATTAAGGAACTTAGAGACTTCTAAGGGCTGTGGAGATGTTTTGCCTTTCTTAAGAAAAAAGACTTGCACCCAAATAAGagcaaaaaatgttttaacatCTAAACATAGTTGATTCTCTAAATGCTGTTTTTCCACCCTGCAAGTGAGCACTGAAAAGCATATGCGTGAAGAAATCTGATGGACGCGACTGAGATAGATAGAGAAAGGCAAGGAAGAGAATTCTGACATGGTGTCGACCCAAATTGACAGAGTGGGAAGAGGAAGGAGTTGGATATTCAGTGATAGACGCATCTGCCACCAAACACAGGTACACTCTGATCAATATTAAGATCAGTCAAAATATCCATCGTCATCATCACAGATTAGCATTATCCTGATACATCCATCGTTCATCAGTCTTTATTGATTTGAGACCTCAGTGTGGAGTGGCTAAGTATTCTATCATATTGCTGTTTATTTATATTCTCCTCTATACATTACAGCACCATTTATCAAATCATTGCTAGCTATTGTTATCAAATTGATCATTTGATTGTAAGCTGGTGATCTTTGCTCATTTTGTTATTATAAATTATCACTAATAACTGTCATCGTAAGAATATTTATGGGGCACATGTATGAATTGCTGTTATTGTATGAAAAACAAAATATCCTTTCTCTTTACATTAATGGACAATTATATGCCTACAAAACAGTCCTTTCTTTCTTGACAGCATATCTGCTCCGTTTAAAAACATTGAAATATCAGAATATACCAAAATCAAAATCTCTTTTGAATAATCTGTAATACCAATTACAACTATAAATGTTTGTagttaaaatgtaaataaataaatatatatatttgcctATTACAGATGTGCGCTAACAATTATATTGTTCTTGAAATATGTGCCATCATGATTTTTTTCTAAGCAACTGAATAATAATAAGCCATAACACTGCAAACTTCTGCTATAATGACCACAAGCCATACTGTCTCTCACCTCACAATAATCATTCCTCTCTTTACTTTACATACAGTCCAGTGTGTCAGGTAGTCACTTACTAGCTGTGTCACTGTGAGCAAGGTGTGTGGATATTGTGCAAAGTGGAGGTTACTGGAAGGGGGAGGGGACAGACACAAAGTGCACAAAACCCCTGTCTAGAATCAGAGGAGGCTGGGACCAGAGGAAAGAGCATTACTCAGCTGTAGCTGTTCTCCATGAATAACTGTGCCTGTTGACCGCTTTGCAAATTGTATGTGTGACAGAGAAGAAAATATTTTGCACAGACTCATGAAAAGGAAAGAGGAACTCAAGCAGAAGGAGCAACCTAGAtaagcagaaatagagagaccACAGCTGATAGACTGGAGAGTGGAGCAGGGATTTTTTCTTCCAACACAGTACTTCAGCTCCTCACCTGGACAATTTGGGCTCTCAATACAACGTAAGAGGGGAAGGGAGTCAGAGAGTCAAGGGCAGGGAGTGGAAGAACAGACAAAAACCTCCTGAGGAAGGAGAGATAGTcatcaatagagagagagaggaggggaagttcCCCCTCTCTCGACCCAACTCGTTGTCAGGCTGGCTGACACAGCCATGGCGTTCACCTTCGCGGCCTTCTGCTACATGCTCACCTTAGTGCTGTGTGCCGCACTCATCTTCTTCGTCATCTGGCAGATTATTGCGTTTGATGAGCTGTGCACAGACTTCAAGAACCCAATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATTCTGAATATTGAAAGAATCTGCAACTTGCTGCGGAAGCTGGTGGTGCCAGAGTACTCCATACATGGGCTGTTCTGCCTGATGTTCATGTGTGCTGGGGAGTGGGTCACCCTGGGCCTAAACATCCCCCTGCTCTTCTACCATCTCTGGAGgtTTTTCCATCGGCCGGCAGATGGGTCAGAGGTAATGTATGACCCTGTCAGTGTGATGAATGCAGACATCCTGAACTACTGTCAGAAGGAGTCCTGGTGTAAGCTGGGCTTCTACCTGCTCTCCTTCTTCTACTACCTGTACAGTATGGTCTACGGCTTGGTGAGTTTCTAAACACAGAATAGAAGACAAAACGACAAAGAGGAGATTGAAAGACAGTAAAAGAGACAGAGCATGCAAGACTAAGACTGGGTGATGTCACTCACCCTTCTTTCTCACCACCCATTACTCCATCACAGACCCTGTTTTGCTCTCCTCAAATCTTTGGATGGAGGGACAAACATCGGAGGACATCGTGAGGAAATTAGGCAAAGTAAAGATACTTTTTTGAGGCTGCTCAGACACTGCCGAGACATAGAAGAGGAGgcgcagacagagaggagaaagagagaacacatCTTAGCCTGTGTACGGGATGCCTTGATCTGACCACATCACGTTTTAAGGGCTGTGGGTCTGCTATTCTTAGTGATACTGTCACTCAACTGTGAATTTATAACGTTTGTGTTGCCTAAGTCCTAGCGTAGATGTTGCGTATTCATACGTCAATATCCTTCCATTCCAATAAACCTCACCATTTTAGAAAATAAACATGTATTTAGTTATTCTACTAATTTGGTTATTATTAATTATTTAAATAATTCAGAACTTGTGGTAAATCATATTCCGAGGATATGAATAGTTAGTTGTTTAAGCAAATAAATACACAGTTCAATGCTACAATTTTGATCCAGAGTGATAGTAATTGTGTTATTCACAAATATCTAATATACGTCATTTATGAagtcaacaacacaaacacacaatatgAACTGAACATACGAACACAACATGAACCAATGGAGCAAGCCAAGAGGAGAAATAACAAGCTGTAACACTGTTTTGATTATGATGCAATGGCCATAAGCTTCTGCGAAGGATCACGGACACCCTGGAGCAATGTTTGAGTCTAGGTCCATCCCAATCAAGGCACTATCTCCCAGCCCCCGTTCCTGCCCAGGGCAAACAGGCGGATTTCATTCCAACAGAAAATTATTCAGGATTGAAGGGAATGTTTTAGCTCTGACCGAGTTGGTACTTGGGTGTTGAAGtattctgtgtttgtctgttctgttctaggcAGCAAGGGATGATTTCACCTGGACTTTCCATGCTCTGTGCTCAGTGATTCTAGATTCTAGAAATCTCATTCAAGAAAAGCAATAGCTAGGAGTGATTACTGTACATGGGATCATATTTCCTCTGTGGACTAATACTGTGTGACACAAATAACTGATGAGGCTGCTGAAGATGCTAGTGTTGACAGGGTTCCAATGATGACTGTGTCAAGCGCAGAAACGCGTCTCACATAGAACATTATGGTGGGACATACATACTGTAACTGTTCTCACTCATAGGTGTCACAGTGAATGTTGTCAGACACTTTAGTCTTCAGTTCATTTCAAAGCCGTGACTTAGCTGGTGCTGTCCTCATCGTCATGAATCCATAGCGCTATGTGTAGATAATTCATCATGATCGGACTGTGTGATGTTAAAATCATTAGAAAAATGGGTAATACTGGAACttgaaaaatacatgtaaaactgAGTGATTATTTATTATAAGCTGACCATAATTGTAGTAATGAATTGTTTACAACAGTTGTGATCAGTtggcatctgaacacacacagaGCCCTGCATTATAATGGAGCCACTCACATTTTAGTAATGTGTCAATATTGTTCAGCTAGGTTTCTTGTGCCaagacacatacagtatgttgatcCTGACAGTTCCCTCTAAaaaaggacaacaacttctcaaCCCCTGCCAACAATGTGAGTCAATCACAGACAATTGCTAAAGCACAAAATGGCGGGTCACAGAGGAGGGAAAATATAGCTAGGCTGACCATCAATGACTGTCATAATGCAGTTCATCAGAATGAATGAATTAATATATATTTAAGAATAACTATTTGTAACTGTCTTCTATACATCTCGCATCACTGTATGCTATATTTGTTGGTGCGGTAGTTTGTATTCATTAGAATACAATATGATATACAGGTCACAAACAGCAATTCACATATTATAATAAAATATCAATGTGTTAAAAT

Function

NR:

description
protein cornichon homolog 2-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967933.1 False 1369 mRNA 0.46 6 29844220 29857693
XM_036967931.1 False 2009 mRNA 0.47 7 29844224 29857693
XM_036967932.1 False 1759 mRNA 0.47 7 29844224 29857693
XM_036967930.1 True 4474 mRNA 0.41 6 29844224 29859442

Neighbor

gene id symbol gene type direction distance location
LOC118945359 LOC106590264 coding upstream 18526 29822440 ~ 29825694 (+)
LOC110509406 NA coding upstream 103551 29739663 ~ 29740669 (+)
LOC110509974 nxf1 coding upstream 146281 29677784 ~ 29697939 (+)
LOC110509973 LOC106563482 coding upstream 169134 29666670 ~ 29675086 (+)
LOC110509970 LOC106563483 coding upstream 181984 29652518 ~ 29662236 (+)
LOC110509988 tmem261 coding downstream 9649 29869091 ~ 29874237 (+)
znhit2 znhit2 coding downstream 26847 29886289 ~ 29888742 (+)
LOC110509993 slc25a45 coding downstream 55415 29914857 ~ 29925677 (+)
LOC110509996 LOC106563468 coding downstream 80865 29940307 ~ 29940985 (+)
LOC110509998 LOC106563463 coding downstream 93050 29952492 ~ 29956193 (+)
G2173558 NA non-coding upstream 4849 29839106 ~ 29839371 (+)
G2173555 NA non-coding upstream 7719 29836141 ~ 29836501 (+)
G2173554 NA non-coding upstream 8138 29831894 ~ 29836082 (+)
G2173548 NA non-coding upstream 15169 29828811 ~ 29829051 (+)
G2173546 NA non-coding upstream 16215 29827772 ~ 29828005 (+)
G2173570 NA non-coding downstream 18333 29877775 ~ 29878698 (+)
G2173580 NA non-coding downstream 19766 29879208 ~ 29879475 (+)
G2173581 NA non-coding downstream 20510 29879952 ~ 29880235 (+)
G2173553 NA non-coding downstream 32545 29891987 ~ 29892424 (+)
G2173114 NA other upstream 256748 29585594 ~ 29587472 (+)
G2173098 NA other upstream 284261 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 1164543 28678848 ~ 28681351 (+)
gigyf1b LOC105024601 other upstream 1531069 28277874 ~ 28313151 (+)
G2173551 vps51 other downstream 34652 29894094 ~ 29896279 (+)
G2173675 NA other downstream 277281 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 460206 30319648 ~ 30323615 (+)

Expression


Co-expression Network