LOC110509993 (slc25a45)


Basic Information

Item Value
gene id LOC110509993
gene name slc25a45
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29914857 ~ 29925677 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591252.2
CAAAACCCTACCCTAGAAAAATGAATCAAAGACGATTTGCCTTGAGATATAGTACTTTGTAGGCAGTCATACAATAGTGCGGGTCGATCAATAAAGTATAATGCTCCGATATAacttgtgttggtgtgtattctACGAAGAGGTAACGCTCAAATCAGTGTGAGCAAGCAACTGAGCATGCCGTTTGTGGAATTCATAGCAGGATGCATCTCAGGAGCAGTAGGGTTGGCTTTTGGTCATCCAATGGACACAGTGAAGGTGCGTCTGCAGACCCAGGTTAAATACAAGGGGATTTGTGACTGTGTGGCTAGGACATACACTCGTGAAGGGATCCCTGGGTTCTTCAAGGGCATGACATTTCCTGTCCTGACTACTGGCATCACCAACGCTGTGGTCTTTGGTTCCTATAGCAATGTTTTAGACTGCCTCACCCAGTCCCAACGGAATGACCGAATCCAAGGCAACCCTGCCTCGGCATCAGCAGTCTTCGCAGCTGGCTGTTTCTCAGGTCTGGCACAGGTGGTGGTTACTGCGCCTGTTGACCTGGTGAAGGTACGCTTGCAGTCCCAGACCAAGGGCTGGGCTGGGGTCGGTGGTGACGGGTATCGAGGTCCCATTCACTGTGTGACTGTCATCCTGAGGGAGGAGGGGCCAAGGGGATTGTTTCGAGGGGGGTTGGCTCTTACCCTGAGAGATGTACCCTGCTATGGAATCTACTTCTTGCCTTACGAAATCACCTGCAGGTTTCTGACTGAAGAAGGCAAACGGCCAGGCACATTTGCAGTATTGATGGCGGGTGGGGTGGCAGGCGTGGTGACGTGGGCCTTTGCCACGCCCATGGATGTGATGAAAGCGCGGCTGCAGATGTCCGGTGCTGGGGGCCGGGTGTACCAGGGGGTCCTGCACTGCATGAGTGTGAGTCTGaaggaggagggggtgagagtGTTCTTTAAGGGGCTCCTCCTGAACAGCCTGAGGGCCTTCCCTGTCAACGCCATTACCTTCCTCAGCTATGAGAGCCTGATGCGTTTCCTCACCCGGCCGTCTGCAGACTGACCACAAGACTATATGCATCTCCTGGATACACTCCGGTCGGACCAAATGATGGAAAGAATAGCAACATTGGATGGGCAAACCATTATGTGAAATGaactggtatatacagtataccttAGCATGCTATACTCAATTGTATCTCCTAAACTGGAGTTTCACACTTTGTGTTATCCTCAATGTGGGCACTCAGACAGGGCTCATGATGCTGTTTTAGTAGGACACAGTGCTGTGATATCATAGGGTGTCACCATACTTATGGATGCAAACTGTCATACAGCATCACCTCTCACAGAGCTATGATACCATCAGTATTTTATATCATGAGACAAAACCTTGAATATGAAAACACCTGGAAACCAAATGTTTATACCAAGACATGGTGTATTTATGTACTGGTATACTATATGAACTTCATAGCCTTCATTTATTAAACTTTTTAATTAACAAAATGTGAAGCAATGGGAATGTAGTTGGTTTATTGCTGACAACCAATCCTCAATTAAAATCAACTTTTTTAGTTAAATAAACCCCCTTCCCCAAAATGTAAACATTTAGTAAAATGATGCATCTTCTACTTATTGCATAAATcaatgtattcacccctttggatttattcacattttgttgattgacaaagtgggattgaaatggaCTTAGTTGTGATTTGTCATTGAGCATCACAGAATACCAAAGTGAAAAGATTTCAAAAATGTTAGCATATAATAACAGTTGTTGCAAAACTATTCAGCCCTTTTGTTTAGagaagcctaaattagttcaggagtcaAATGCGGCTTAACCAACCacaagttacatggactcactctgtgtgaaataataggggttgacatttcttttaatgactacctcttcCTCTGTCCCCAATACATACATTGAACTACAAAGACTAGGCAGCTTTTCAAAAGCCtcagaagggcagtgattggtagattaAATATCTGATCTAGTATTGTTATCcatctttaagcatggtcaagtttattatgctgtggatgatgtattaaaccacacacacaaagagagtcgttcttctgaactgagctgcaagacaggaaggaaactgctaaGAGATGTCACCAATGTTAAAACAGCTCCAGTTAAATGGCTGTgaagggagaaaactgaggatggatcaacatttcAGTTACTCCACAATGAAATGTAAAGAATAAAAGTAAAATAACCTTTTTGGCCTAAATAAAAAGCCTTATGCTTGAGACAAATCCAACAcgtcactgagtaactgcctccttattttcaagcatggtggtggctgcatcatggtatgggtattcTTGACGTTGGCAAAGACAGgagtttcaggataaaaataaatgggatGGAGCTAAGCTTTACACCAAACACAGAGGAATTTACCTTTCAGCATGGCAATAACcaacaacacaaggccaaatctacactgtagcaggacaataacc
>XM_036967421.1
GTTTACTGCTCCAGACTGATGTGTGCGTTTAAATCTGCACAGGTTGAAAAGCAGCATATCACTAGCCATATACAAGCCATATAAGCAATGCTATATGCTTTAGCGACCTATATTTTCTATCAATGATTTAGAATGGGACTCCAATAGGTATCTTGACATTGAACAGTCAACCCTGTGCAGACTCTTATCTTTTTTGGTACTGTACTTGCGGTGGCTTGCTTTTGAAGACAGTGTGAGCAAGCAACTGAGCATGCCGTTTGTGGAATTCATAGCAGGATGCATCTCAGGAGCAGTAGGGTTGGCTTTTGGTCATCCAATGGACACAGTGAAGGTGCGTCTGCAGACCCAGGTTAAATACAAGGGGATTTGTGACTGTGTGGCTAGGACATACACTCGTGAAGGGATCCCTGGGTTCTTCAAGGGCATGACATTTCCTGTCCTGACTACTGGCATCACCAACGCTGTGGTCTTTGGTTCCTATAGCAATGTTTTAGACTGCCTCACCCAGTCCCAACGGAATGACCGAATCCAAGGCAACCCTGCCTCGGCATCAGCAGTCTTCGCAGCTGGCTGTTTCTCAGGTCTGGCACAGGTGGTGGTTACTGCGCCTGTTGACCTGGTGAAGGTACGCTTGCAGTCCCAGACCAAGGGCTGGGCTGGGGTCGGTGGTGACGGGTATCGAGGTCCCATTCACTGTGTGACTGTCATCCTGAGGGAGGAGGGGCCAAGGGGATTGTTTCGAGGGGGGTTGGCTCTTACCCTGAGAGATGTACCCTGCTATGGAATCTACTTCTTGCCTTACGAAATCACCTGCAGGTTTCTGACTGAAGAAGGCAAACGGCCAGGCACATTTGCAGTATTGATGGCGGGTGGGGTGGCAGGCGTGGTGACGTGGGCCTTTGCCACGCCCATGGATGTGATGAAAGCGCGGCTGCAGATGTCCGGTGCTGGGGGCCGGGTGTACCAGGGGGTCCTGCACTGCATGAGTGTGAGTCTGaaggaggagggggtgagagtGTTCTTTAAGGGGCTCCTCCTGAACAGCCTGAGGGCCTTCCCTGTCAACGCCATTACCTTCCTCAGCTATGAGAGCCTGATGCGTTTCCTCACCCGGCCGTCTGCAGACTGACCACAAGACTATATGCATCTCCTGGATACACTCCGGTCGGACCAAATGATGGAAAGAATAGCAACATTGGATGGGCAAACCATTATGTGAAATGaactggtatatacagtataccttAGCATGCTATACTCAATTGTATCTCCTAAACTGGAGTTTCACACTTTGTGTTATCCTCAATGTGGGCACTCAGACAGGGCTCATGATGCTGTTTTAGTAGGACACAGTGCTGTGATATCATAGGGTGTCACCATACTTATGGATGCAAACTGTCATACAGCATCACCTCTCACAGAGCTATGATACCATCAGTATTTTATATCATGAGACAAAACCTTGAATATGAAAACACCTGGAAACCAAATGTTTATACCAAGACATGGTGTATTTATGTACTGGTATACTATATGAACTTCATAGCCTTCATTTATTAAACTTTTTAATTAACAAAATGTGAAGCAATGGGAATGTAGTTGGTTTATTGCTGACAACCAATCCTCAATTAAAATCAACTTTTTTAGTTAAATAAACCCCCTTCCCCAAAATGTAAACATTTAGTAAAATGATGCATCTTCTACTTATTGCATAAATcaatgtattcacccctttggatttattcacattttgttgattgacaaagtgggattgaaatggaCTTAGTTGTGATTTGTCATTGAGCATCACAGAATACCAAAGTGAAAAGATTTCAAAAATGTTAGCATATAATAACAGTTGTTGCAAAACTATTCAGCCCTTTTGTTTAGagaagcctaaattagttcaggagtcaAATGCGGCTTAACCAACCacaagttacatggactcactctgtgtgaaataataggggttgacatttcttttaatgactacctcttcCTCTGTCCCCAATACATACATTGAACTACAAAGACTAGGCAGCTTTTCAAAAGCCtcagaagggcagtgattggtagattaAATATCTGATCTAGTATTGTTATCcatctttaagcatggtcaagtttattatgctgtggatgatgtattaaaccacacacacaaagagagtcgttcttctgaactgagctgcaagacaggaaggaaactgctaaGAGATGTCACCAATGTTAAAACAGCTCCAGTTAAATGGCTGTgaagggagaaaactgaggatggatcaacatttcAGTTACTCCACAATGAAATGTAAAGAATAAAAGTAAAATAACCTTTTTGGCCTAAATAAAAAGCCTTATGCTTGAGACAAATCCAACAcgtcactgagtaactgcctccttattttcaagcatggtggtggctgcatcatggtatgggtattcTTGACGTTGGCAAAGACAGgagtttcaggataaaaataaatgggatGGAGCTAAGCTTTACACCAAACACAGAGGAATTTACCTTTCAGCATGGCAATAACcaacaacacaaggccaaatctacactgtagcaggacaataacc
>XM_036967422.1
gctggcgctgcagtacagcgcccttaaccactgcgccacccgggaggcaactGATCCCTGGGTTCTTCAAGGGCATGACATTTCCTGTCCTGACTACTGGCATCACCAACGCTGTGGTCTTTGGTTCCTATAGCAATGTTTTAGACTGCCTCACCCAGTCCCAACGGAATGACCGAATCCAAGGCAACCCTGCCTCGGCATCAGCAGTCTTCGCAGCTGGCTGTTTCTCAGGTCTGGCACAGGTGGTGGTTACTGCGCCTGTTGACCTGGTGAAGGTACGCTTGCAGTCCCAGACCAAGGGCTGGGCTGGGGTCGGTGGTGACGGGTATCGAGGTCCCATTCACTGTGTGACTGTCATCCTGAGGGAGGAGGGGCCAAGGGGATTGTTTCGAGGGGGGTTGGCTCTTACCCTGAGAGATGTACCCTGCTATGGAATCTACTTCTTGCCTTACGAAATCACCTGCAGGTTTCTGACTGAAGAAGGCAAACGGCCAGGCACATTTGCAGTATTGATGGCGGGTGGGGTGGCAGGCGTGGTGACGTGGGCCTTTGCCACGCCCATGGATGTGATGAAAGCGCGGCTGCAGATGTCCGGTGCTGGGGGCCGGGTGTACCAGGGGGTCCTGCACTGCATGAGTGTGAGTCTGaaggaggagggggtgagagtGTTCTTTAAGGGGCTCCTCCTGAACAGCCTGAGGGCCTTCCCTGTCAACGCCATTACCTTCCTCAGCTATGAGAGCCTGATGCGTTTCCTCACCCGGCCGTCTGCAGACTGACCACAAGACTATATGCATCTCCTGGATACACTCCGGTCGGACCAAATGATGGAAAGAATAGCAACATTGGATGGGCAAACCATTATGTGAAATGaactggtatatacagtataccttAGCATGCTATACTCAATTGTATCTCCTAAACTGGAGTTTCACACTTTGTGTTATCCTCAATGTGGGCACTCAGACAGGGCTCATGATGCTGTTTTAGTAGGACACAGTGCTGTGATATCATAGGGTGTCACCATACTTATGGATGCAAACTGTCATACAGCATCACCTCTCACAGAGCTATGATACCATCAGTATTTTATATCATGAGACAAAACCTTGAATATGAAAACACCTGGAAACCAAATGTTTATACCAAGACATGGTGTATTTATGTACTGGTATACTATATGAACTTCATAGCCTTCATTTATTAAACTTTTTAATTAACAAAATGTGAAGCAATGGGAATGTAGTTGGTTTATTGCTGACAACCAATCCTCAATTAAAATCAACTTTTTTAGTTAAATAAACCCCCTTCCCCAAAATGTAAACATTTAGTAAAATGATGCATCTTCTACTTATTGCATAAATcaatgtattcacccctttggatttattcacattttgttgattgacaaagtgggattgaaatggaCTTAGTTGTGATTTGTCATTGAGCATCACAGAATACCAAAGTGAAAAGATTTCAAAAATGTTAGCATATAATAACAGTTGTTGCAAAACTATTCAGCCCTTTTGTTTAGagaagcctaaattagttcaggagtcaAATGCGGCTTAACCAACCacaagttacatggactcactctgtgtgaaataataggggttgacatttcttttaatgactacctcttcCTCTGTCCCCAATACATACATTGAACTACAAAGACTAGGCAGCTTTTCAAAAGCCtcagaagggcagtgattggtagattaAATATCTGATCTAGTATTGTTATCcatctttaagcatggtcaagtttattatgctgtggatgatgtattaaaccacacacacaaagagagtcgttcttctgaactgagctgcaagacaggaaggaaactgctaaGAGATGTCACCAATGTTAAAACAGCTCCAGTTAAATGGCTGTgaagggagaaaactgaggatggatcaacatttcAGTTACTCCACAATGAAATGTAAAGAATAAAAGTAAAATAACCTTTTTGGCCTAAATAAAAAGCCTTATGCTTGAGACAAATCCAACAcgtcactgagtaactgcctccttattttcaagcatggtggtggctgcatcatggtatgggtattcTTGACGTTGGCAAAGACAGgagtttcaggataaaaataaatgggatGGAGCTAAGCTTTACACCAAACACAGAGGAATTTACCTTTCAGCATGGCAATAACcaacaacacaaggccaaatctacactgtagcaggacaataacc

Function

symbol description
slc25a45 Predicted to enable acyl carnitine transmembrane transporter activity. Predicted to be involved in acyl carnitine transport and amino acid transport. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane.

NR:

description
solute carrier family 25 member 45 isoform X2

GO: NA

KEGG:

id description
K15123 SLC25A45_47; solute carrier family 25, member 45/47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591252.2 False 2516 mRNA 0.44 7 29914857 29925677
XM_036967421.1 False 2589 mRNA 0.44 7 29915152 29925677
XM_036967422.1 True 2239 mRNA 0.44 4 29920501 29925677

Neighbor

gene id symbol gene type direction distance location
znhit2 znhit2 coding upstream 26115 29886289 ~ 29888742 (+)
LOC110509988 tmem261 coding upstream 40620 29869091 ~ 29874237 (+)
cnih2 LOC106563472 coding upstream 55415 29844220 ~ 29859442 (+)
LOC118945359 LOC106590264 coding upstream 89163 29822440 ~ 29825694 (+)
LOC110509406 NA coding upstream 174188 29739663 ~ 29740669 (+)
LOC110509996 LOC106563468 coding downstream 14630 29940307 ~ 29940985 (+)
LOC110509998 LOC106563463 coding downstream 26815 29952492 ~ 29956193 (+)
LOC110509374 LOC106563556 coding downstream 47889 29973566 ~ 29977591 (+)
LOC110509999 LOC106563461 coding downstream 52797 29978474 ~ 30007461 (+)
LOC110510000 LOC106563458 coding downstream 124511 30050188 ~ 30107503 (+)
G2173553 NA non-coding upstream 22433 29891987 ~ 29892424 (+)
G2173581 NA non-coding upstream 34622 29879952 ~ 29880235 (+)
G2173580 NA non-coding upstream 35382 29879208 ~ 29879475 (+)
G2173570 NA non-coding upstream 36159 29877775 ~ 29878698 (+)
G2173603 NA non-coding downstream 43507 29969184 ~ 29970572 (+)
G2173614 NA non-coding downstream 57647 29983324 ~ 29995153 (+)
G2173611 NA non-coding downstream 74083 29999760 ~ 30000561 (+)
G2173621 NA non-coding downstream 85573 30011250 ~ 30011476 (+)
G2173551 vps51 other upstream 18578 29894094 ~ 29896279 (+)
LOC110509970 LOC106563483 other upstream 252623 29652518 ~ 29662236 (+)
G2173114 NA other upstream 327385 29585594 ~ 29587472 (+)
G2173098 NA other upstream 354898 29559570 ~ 29559959 (+)
G2173675 NA other downstream 211046 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 393971 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 411175 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 538265 30463942 ~ 30468124 (+)

Expression


Co-expression Network