LOC110509996 (LOC106563468)


Basic Information

Item Value
gene id LOC110509996
gene name LOC106563468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29940307 ~ 29940985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591256.2
TGTCAATATCAAACAAAGCCTCAACCTGGGGACCTGATTGAGATATTCCGGGGGACCTATCAGCACTGGGCCTTGTATGTTGGAGAAGGCTACATCGTCCACCTCTGTCCCCCCACTGAGGCAGCTGGGGCTGGTGCCTTTAGCCTAgtgtctgtgttgtgtgacacagcCGTTGTGACCAAGGAAAGCCTGGAGGAGATAGTGGGGAAGGACAGGTTCCTTGTCAACAACCTGCTGGATGGCAAACACAAACCCCGGAGTGTTTATGACATACTGAGGGATGCCCGCAGCCTGCTGGGCCTGGAGATGCCTTACTGCATCCTGAGGGGAAACTGTGAACACTTTGTCACAGAGCTGAGATATGGGAAGGGAGAGTCCCGGCAGGTGTGTGTGCTGACAATCATGATATCCTTCTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591256.2 True 417 mRNA 0.53 2 29940307 29940985

Neighbor

gene id symbol gene type direction distance location
LOC110509993 slc25a45 coding upstream 14630 29914857 ~ 29925677 (+)
znhit2 znhit2 coding upstream 51565 29886289 ~ 29888742 (+)
LOC110509988 tmem261 coding upstream 66070 29869091 ~ 29874237 (+)
cnih2 LOC106563472 coding upstream 80865 29844220 ~ 29859442 (+)
LOC118945359 LOC106590264 coding upstream 114613 29822440 ~ 29825694 (+)
LOC110509998 LOC106563463 coding downstream 11507 29952492 ~ 29956193 (+)
LOC110509374 LOC106563556 coding downstream 32581 29973566 ~ 29977591 (+)
LOC110509999 LOC106563461 coding downstream 37489 29978474 ~ 30007461 (+)
LOC110510000 LOC106563458 coding downstream 109203 30050188 ~ 30107503 (+)
LOC110510005 LOC106563457 coding downstream 179532 30120517 ~ 30127527 (+)
G2173553 NA non-coding upstream 47883 29891987 ~ 29892424 (+)
G2173581 NA non-coding upstream 60072 29879952 ~ 29880235 (+)
G2173580 NA non-coding upstream 60832 29879208 ~ 29879475 (+)
G2173570 NA non-coding upstream 61609 29877775 ~ 29878698 (+)
G2173603 NA non-coding downstream 28199 29969184 ~ 29970572 (+)
G2173614 NA non-coding downstream 42339 29983324 ~ 29995153 (+)
G2173611 NA non-coding downstream 58775 29999760 ~ 30000561 (+)
G2173621 NA non-coding downstream 70265 30011250 ~ 30011476 (+)
G2173551 vps51 other upstream 44028 29894094 ~ 29896279 (+)
LOC110509970 LOC106563483 other upstream 278073 29652518 ~ 29662236 (+)
G2173114 NA other upstream 352835 29585594 ~ 29587472 (+)
G2173098 NA other upstream 380348 29559570 ~ 29559959 (+)
G2173675 NA other downstream 195738 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 378663 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 395867 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 522957 30463942 ~ 30468124 (+)

Expression


Co-expression Network