LOC110509374 (LOC106563556)



Basic Information


Item Value
gene id LOC110509374
gene name LOC106563556
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29973566 ~ 29977591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021590273.2
ACCAACCTAAGCATGGGCACACAGGTGCTAGAACAGGACTGAAGGGTCACCTGGACTTTCGTTAATAACTTTTTTGGGGGATCAAGCAGGTGAACTTTGACACCACCACTAACAAATCCAGGAGATACCAATTAAGATACACTGTTCAGTATTTTGTGGCTTTTATTTCTCCCCACAGATTTTGTTCACTAAACAATTTTGGTCTGATTATTCCTTATTTTCTTTTGGATTACAAACCCATCTTTCTCCTACAAGAATCCTCTAACCATCTCTCCTTTGAAAAACAATCATCGAATCAGTCAACTTCATTTAAAACTGAATTCTACCTGTTGCACTTCAAGTTTTTCCAGACATACTCTTCACCTTTGACCTTACCCACCCTTTCCAGGTCGCCTCTCAGATCATTCCAGTAGTCAGTCGCTGCACTCTCCTCCTTCCCCACAGATCCCACTCATCATCCCTTCATCACCACATTCCTAATTTATTTCTCCCAGTAACCCTCGGAGCCTCCGTGGGCTCCCACCACCTCCATGGTGCTGATGAAGATGAAGTTCCCTTTTGAGAAGAGGGTGAAGCTGGCCCAGGGGCTGTGGCTGCTCTCCTGGATGGCCACACTGGCCGGAGCGTTCACCTTCACCCTGGGCTGCTTCCTCAAGACCGAACTCCGCAGGAGGGCAGAGGTAATGGACAACACAGAGATCCATGCTGTGCCCAACACCCTGATGATAGTGGGTCTGGCCTCTCTGGGTATCAACTACTTCGCAGGCCGTATGTGCCAGGATGCGCTGGATGCCGGACGCTTTCCCCGCTGGAAAACCTTCATGCAACCCTACTGGGGTGTTTCCCTCCTCTTCACCCTGCTCATGTTGATGGCTGTGATCATGAGCTATGCCATGAAGGGGAACCTGGAGTCCTCCCTGAAGATTGGCCTGAAGAACGGCATCCGCTTCTACAAGGACACAGATACCCCCGGCCGCTGCTTCCAGAAGCAGAACATTGACCGCCTGCAGATGGAGTTCCGTTGCTGCGGAAACACCGACTTCAAGGACTGGTTCGAGGTCCAGTGGATCAGCAACCGCTACCTAGACTTTAGCTCTAAGGAAGTGAAGGAccGTGTTAAGAGCAATGTGGATGGGCGTTACCTGTTTGATGGGGTCCCTTTCAGCTGCTGCAACCCCAGTTCCCCAAGACCCTGCATCCAGGACCGCCTCACCAACAACTCAGCCCACTACAGCTATGAGCACCAGACCGAGGAGCTCAACATCTACATCCGCGGCTGCAGGGAAGCTCTAGTCAACTACTACATGGGCCTGATGAACACTATTGGTGCTGGGgtcctgtctgtcttcctgctgCAGTCATCTGTGCTGGTAAGTCTGCGATACCTGCAGACAACCATGGAAGCGTTGGCAGGGCAGGAGAACACTGAGATTGAGACTGAGGGCTACCTGCTGGAGAAAGGGGTGAAGGAGACGATCATGGAGTATGTGACTCCTGTACTGGTTTTCCTTCAGCTGAACCAGGTGGGCAGTGAAGACACTGAAGCTTAGGCGACCCCCGCCAGATAAAGTGGAGAAATCTAAATGTTTCAGACAGGGTGGTGTAGGGGACAAACGTGGCATTTTATTGGGTGATAAATAATCTAACTAGACACTGATCAATTAATCTGGTATTTCTTTGACATCACAATCCATTTTAATGCTGATATTTTTCTGTGTTTAATGTTTTACCCCTAaatgcagtgtttcccaaactcggtcctggggaccccaaggggtgcacgttttgatttttgccctagcacttcacagctgattcaaataatgaactcattatcaagctttgattatttgaattagCTGTGGAGTGCTAGGGCAAAGAGTTTGAGAAATTCTGCCTAAACGAGTGACACGAATGTTGTAATCTATTTCAGTCACCTGAGGGCTAATATATTTTTGTATCAGTTGTCCGGGGACAATGCACCCCAGTCTTAGGTATCcatgactgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaaaaaaatagagGCACACATTAATCACATTAACCTCATCCCAAACCCAAGCCCTCCACAATTATCCATGATTAAATTGGGTTTTTGATGTTTAATCAATTACATATACTCCCCAAAGGAGAAATAAAAAACACATTATTGTAATTTTGTATTTTATAACTCGGGGTTGCTATGCATGGTTATTTCCACCTCACCAATGCAGTGTTCTCTCAGTTAATACCACAACAATATTATGGTTGACACTTAACAATGCAAAGATATCTCCAATTACTAAGGGATAGAATTAtatgaacattttacattttggggaatattttaAAAAGCACATGTTACATTTTGAGTAAAAGACTAACAGCAATGTAAAGCTGACTGTAGAAAGATTCAATGCTCTGCTATGTAACCCTCAGCAATATGACAAACACAGCACTTTATTACAGAGCTATTATGACAGAGAATTATT

Function


NR:

description
RDS/peripherin-like protein xRDS35

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021590273.2 True 2538 mRNA 0.46 4 29973566 29977591

Neighbor


gene id symbol gene type direction distance location
LOC110509998 LOC106563463 coding upstream 17373 29952492 ~ 29956193 (+)
LOC110509996 LOC106563468 coding upstream 32581 29940307 ~ 29940985 (+)
LOC110509993 slc25a45 coding upstream 47889 29914857 ~ 29925677 (+)
znhit2 znhit2 coding upstream 84824 29886289 ~ 29888742 (+)
LOC110509988 tmem261 coding upstream 99329 29869091 ~ 29874237 (+)
LOC110509999 LOC106563461 coding downstream 883 29978474 ~ 30007461 (+)
LOC110510000 LOC106563458 coding downstream 72597 30050188 ~ 30107503 (+)
LOC110510005 LOC106563457 coding downstream 142926 30120517 ~ 30127527 (+)
LOC110510002 LOC106563456 coding downstream 151927 30129518 ~ 30135940 (+)
LOC110510004 LOC106563454 coding downstream 161752 30139343 ~ 30147325 (+)
G2173603 NA non-coding upstream 2994 29969184 ~ 29970572 (+)
G2173553 NA non-coding upstream 81142 29891987 ~ 29892424 (+)
G2173581 NA non-coding upstream 93331 29879952 ~ 29880235 (+)
G2173580 NA non-coding upstream 94091 29879208 ~ 29879475 (+)
G2173570 NA non-coding upstream 94868 29877775 ~ 29878698 (+)
G2173614 NA non-coding downstream 5733 29983324 ~ 29995153 (+)
G2173611 NA non-coding downstream 22169 29999760 ~ 30000561 (+)
G2173621 NA non-coding downstream 33659 30011250 ~ 30011476 (+)
G2173622 NA non-coding downstream 35422 30013013 ~ 30054351 (+)
G2173551 vps51 other upstream 77287 29894094 ~ 29896279 (+)
LOC110509970 LOC106563483 other upstream 311332 29652518 ~ 29662236 (+)
G2173114 NA other upstream 386094 29585594 ~ 29587472 (+)
G2173675 NA other downstream 159132 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 342057 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 359261 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 486351 30463942 ~ 30468124 (+)
LOC110510022 LOC106563433 other downstream 845023 30817845 ~ 30824144 (+)

Expression



Co-expression Network