LOC110510023 (tmm47)


Basic Information

Item Value
gene id LOC110510023
gene name tmm47
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30845842 ~ 30863487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591294.2
CATTGTGCGCACAGACAGACGCCGGGAGGAGAGGACTTTATGAGGGGTTGCACCACAACTTGCTGTAGTCGATTCTGAACTTTCGGATCTGATCGTGCTTGAGGACCCTGTCGCAGCTTTTATTTGCTCCTCAATTTCAACACGCGTGGGTCCAAGTCAACTTAATATGAAAAAATGTCGATAAATGAAGTGTACGTTTTCCGACCGTTCAAGTTGATTgctttactttgtatatttctggCATTGTGTCTGGACATCGTAGCGTTATTGAGTCCCGCCTGGGTAACGGCAGAGCGTTTTTCTTTGTCGCTATGGGAATCATGCACTGAAACAGAGGCTGGCTGGAGATGCCTTTCCACCCTCACATCTGactggcagatcGCCACCCTGGTGCTGCTGCTGGCCGGTGCTGCGGTGACTCTGGTGACCTTCCTGGTGGCCCTCATCTCCCTGTGCCGGGGGACACGCATACGGCACTACCGCATGGTGGCTGTGTTCCTGTTCACTGCAGTGGTCCTTCAGGCCTGTGCACTGGTCCTCTACCCAATCAAGTTCATTGATGGAACTGTCCTCCAGACCTACCATGAGTTCAACTGGGGCTACGGACTGGGCTGGGGGGGCACCATCTTCATGCTAGGGGGAGGCATCCTCTTCTGCCTCCGGACGGACATGTACGAGGATGCTATGTACtgagtcctctctctcctactctctatatctctctcttgttctttctgtcacacacaaacaaatattgACATTCACTCTCTTGTGCGACAacacacccacataaacacatcCTTCCTCTGCCCACGTAGACAAGCTTCGAcacctacatacagtacatctctgtTATTTATAGACAGTGTGTGAGGCCTCCTGGCTCTGACTGATCAGCAGGAGAGATGAAGTGGGAGGAGCAGCTGTGTGGAGAGAATGTCTGCCTGTCCCCAGTGGGGTGCCAGAGACCCTCACCACGGTCAGAAAGACAGCCATGATGTTAAATCACAGAAATGGTTTTGGACAGACGGCGCATCCCATGAATCTCCATTCGTAGAGCAACAAGGAAGTAGATTCTCTGAGCTCTACCTTCTGGGCTGAGGTGTTTATATAAGTGATTGTTACAGTATATGGGCCATCccaccaattcggtgccttttgaAAAAAATTACTTTTGATTTcacattttaacattctgtcataaagagcaaatgttcaacttaataaaagtTTTCCCATCTCAAAATAAATAGAAAAGACAATAGAAAGTGCCTATTACATGCCGAATAAAGTAACAGAGTTGACAATttaatcttaaatcagccatgaatccTGTTTTGACTTGGGGAATAGAAGCTTGTTGTTtgcaacagggagtggcaattgaatgcaagcttcaccaaAAATGTTTCATTGTTTTAACATTTATAGTATGTCTAtatatgggtaacagggttgaccatgttGTGCTCGACCCCCTCACTTTCCACGACAGACACCAGAACATGTCCAATAGGAGTAgagccagctcacctgcttttacactaggATTTGACTATGAAatgtttcttaaaaaaaaaaaaactaaggcatagtttcaccatattaaaacgagagttaAGATAATGTAACAGGgatgaccttaaaatgaggggtAGGGGTAAATGAttcactaatcacattaaatCAATGATTTTGTCAAAGCAACTtcataactagggctttacaatgacgGTGAAAACGTACAGAATTGTAGGGTTAAGTGGGGTAAAATATTACAAGTCACAGAGGTACATGGAGCGACATGTCAAAATACAGCATTGTAAGGTTAAGTGGGGTAAAATATTACAAGTCACAGAGGTAcatggagggacatgtcaaaatacAGCATTGTAAGGTTAAGTGGGGTAAAATATTACAAGTCACAGAGGTAcatggagggacatgtcaaaatacACAATTTGGGCtctttagcaagtctttattcatatcgAAAAATGTGATTTAtagaattctccatgtggtctatattaattTAATATAAAAgtattttaaaatgtaatatcggtgcacAAAGTTTACTTAAAATAGCAAATGGATGCAAAAGGCACTCTTTTAGTGGAACGACCCAtatatttctttttttcttttgtgtatttttttgtgatgacGACAAATAATATTGTTAATGTATTTATGGTATCATTTATCTTGCTATCTATTCTCCCACAGGAAGATATATATTTTATGTATTGCTGTTTAATAATTGCAGTTTCTGAACACTGAGAACTTCAAATGGGTGAATCCCAAAACATGCctggttttctaactcctcctgACATTTGTAGTGTAAAATAAACAGTACTGATATATATGCAATAA
>XR_002471522.2
CATTGTGCGCACAGACAGACGCCGGGAGGAGAGGACTTTATGAGGGGTTGCACCACAACTTGCTGTAGTCGATTCTGAACTTTCGGATCTGATCGTGCTTGAGGACCCTGTCGCAGCTTTTATTTGCTCCTCAATTTCAACACGCGTGGGTCCAAGTCAACTTAATATGAAAAAATGTCGATAAATGAAGTGTACGTTTTCCGACCGTTCAAGTTGATTgctttactttgtatatttctggCATTGTGTCTGGACATCGTAGCGTTATTGAGTCCCGCCTGGGTAACGGCAGAGCGTTTTTCTTTGTCGCTATGGGAATCATGCACTGAAACAGAGGCTGGCTGGAGATGCCTTTCCACCCTCACATCTGactggcagatcGCCACCCTGGTGCTGCTGCTGGCCGGTGCTGCGGTGACTCTGGTGACCTTCCTGGTGGCCCTCATCTCCCTGTGCCGGGGGACACGCATACGGCACTACCGCATGGTGGCTGTGTTCCTGTTCACTGCAGTGGTCCTTCAGGCCTGTGCACTGGTCCTCTACCCAATCAAGTTCATTGATGGAACTGTCCTCCAGACCTACCATGAGTTCAACTGGGGCTACGGACTGGGCTGGGGGGGCACCATCTTCATGCTAGGGGGAGGCATCCTCTTCTGCCTCCGGACGGACATGTACGAGGATGCTATGTACtgagtcctctctctcctactctctatatctctctcttgttctttctgtcacacacaaacaaatattgACATTCACTCTCTTGTGCGACAacacacccacataaacacatcCTTCCTCTGCCCACGTAGACAAGCTTCGAcacctacatacagtacatctctgtTATTTATAGACAGTGTGTGAGGCCTCCTGGCTCTGACTGATCAGCAGGAGAGATGAAGTGGGAGGAGCAGCTGTGTGGAGAGAATGTCTGCCTGTCCCCAGTGGGGTGCCAGAGACCCTCACCACGGTCAGAAAGACAGCCATGATGTTAAATCACAGAAATGGTTTTGGACAGACGGCGCATCCCATGAATCTCCATTCGTAGAGCAACAAGGAAGTAGATTCTCTGAGCTCTACCTTCTGGGCTGAGGTGTTTATATAAGTGATTGTTACAGTATATGGGCCATCccaccaattcggtgccttttgaAAAAAATTACTTTTGATTTcacattttaacattctgtcataaagagcaaatgttcaacttaataaaagtTTTCCCATCTCAAAATAAATAGAAAAGACAATAGAAAGTGCCTATTACATGCCGAATAAAGTAACAGAGTTGACAATttaatcttaaatcagccatgaatccTGTTTTGACTTGGGGAATAGAAGCTTGTTGTTtgcaacagggagtggcaattgaatgcaagcttcaccaaAAATGTTTCATTGTTTTAACATTTATAGTATGTCTAtatatgggtaacagggttgaccatgttGTGCTCGACCCCCTCACTTTCCACGACAGACACCAGAACATGTCCAATAGGAGTAgagccagctcacctgcttttacactaggATTTGACTATGAAatgtttcttaaaaaaaaaaaaactaaggcatagtttcaccatattaaaacgagagttaAGATAATGTAACAGGgatgaccttaaaatgaggggtAGGGGTAAATGAttcactaatcacattaaatCAATGATTTTGTCAAAGCAACTtcataactagggctttacaatgacgGTGAAAACGTACAGAATTGTAGGGTTAAGTGGGGTAAAATATTACAAGTCACAGAGGTAcatggagggacatgtcaaaatacAGCATTGTAAGGTTAAGTGGGGTAAAATATTACAAGTCACAGAGGTAcatggagggacatgtcaaaatacACAATTTGGGCtctttagcaagtctttattcatatcgAAAAATGTGATTTAtagaattctccatgtggtctatattaattTAATATAAAAgtattttaaaatgtaatatcggtgcacAAAGTTTACTTAAAATAGCAAATGGATGCAAAAGGCACTCTTTTAGTGGAACGACCCAtatatttctttttttcttttgtgtatttttttgtgatgacGACAAATAATATTGTTAATGTATTTATGGTATCATTTATCTTGCTATCTATTCTCCCACAGGAAGATATATATTTTATGTATTGCTGTTTAATAATTGCAGTTTCTGAACACTGAGAACTTCAAATGGGTGAATCCCAAAACATGCctggttttctaactcctcctgACATTTGTAGTGTAAAATAAACAGTACTGATATATATGCAATAA
>XR_005040442.1
CATTGTGCGCACAGACAGACGCCGGGAGGAGAGGACTTTATGAGGGGTTGCACCACAACTTGCTGTAGTCGATTCTGAACTTTCGGATCTGATCGTGCTTGAGGACCCTGTCGCAGCTTTTATTTGCTCCTCAATTTCAACACGCGTGGGTCCAAGTCAACTTAATATGAAAAAATGTCGATAAATGAAGTGTACGTTTTCCGACCGTTCAAGTTGATTgctttactttgtatatttctggCATTGTGTCTGGACATCGTAGCGTTATTGAGTCCCGCCTGGGTAACGGCAGAGCGTTTTTCTTTGTCGCTATGGGAATCATGCACTGAAACAGAGGCTGGCTGGAGATGCCTTTCCACCCTCACATCTGactggcagatcGCCACCCTGGTGCTGCTGCTGGCCGGTGCTGCGGTGACTCTGGTGACCTTCCTGGTGGCCCTCATCTCCCTGTGCCGGGGGACACGCATACGGCACTACCGCATGGTGGCTGTGTTCCTGTTCACTGCAGTGGTCCTTCAGGCCTGTGCACTGGTCCTCTACCCAATCAAGTTCATTGATGGAACTGTCCTCCAGACCTACCATGAGTTCAACTGGGGCTACGGACTGGGCTGGGGGGGCACCATCTTCATGCTAGGGGGAGGCATCCTCTTCTGCCTCCGGACGGACATGTACGAGGATGCTATGTACtgagtcctctctctcctactctctatatctctctcttgttctttctgtcacacacaaacaaatattgACATTCACTCTCTTGTGCGACAacacacccacataaacacatcCTTCCTCTGCCCACGTAGACAAGCTTCGAcacctacatacagtacatctctgtTATTTATAGACAGTGTGTGAGGCCTCCTGGCTCTGACTGATCAGCAGGAGAGATGAAGTGGGAGGAGCAGCTGTGTGGAGAGAATGTCTGCCTGTCCCCAGTGGGGTGCCAGAGACCCTCACCACGGTCAGAAAGACAGCCATGATGTTAAATCACAGAAATGGTTTTGGACAGACGGCGCATCCCATGAATCTCCATTCGTAGAGCAACAAGGAAGTAGATTCTCTGAGCTCTACCTTCTGGGCTGAGGTGTTTATATAAGTGATTGTTACAGTATATGGGCCATCccaccaattcggtgccttttgaAAAAAATTACTTTTGATTTcacattttaacattctgtcataaagagcaaatgttcaacttaataaaagtTTTCCCATCTCAAAATAAATAGAAAAGACAATAGAAAGTGCCTATTACATGCCGAATAAAGTAACAGAGTTGACAATttaatcttaaatcagccatgaatccTGTTTTGACTTGGGGAATAGAAGCTTGTTGTTtgcaacagggagtggcaattgaatgcaagcttcaccaaAAATGTTTCATTGTTTTAACATTTATAGTATGTCTAtatatgggtaacagggttgaccatgttGTGCTCGACCCCCTCACTTTCCACGACAGACACCAGAACATGTCCAATAGGAGTAgagccagctcacctgcttttacactaggATTTGACTATGAAatgtttcttaaaaaaaaaaaaactaaggcatagtttcaccatattaaaacgagagttaAGATAATGTAACAGGgatgaccttaaaatgaggggtAGGGGTAAATGAttcactaatcacattaaatCAATGATTTTGTCAAAGCAACTtcataactagggctttacaatgacgGTGAAAACGTACAGAATTGTAGGGTTAAGTGGGGTAAAATATTACAAGTCACAGAGGTAcatggagggacatgtcaaaatacACAATTTGGGCtctttagcaagtctttattcatatcgAAAAATGTGATTTAtagaattctccatgtggtctatattaattTAATATAAAAgtattttaaaatgtaatatcggtgcacAAAGTTTACTTAAAATAGCAAATGGATGCAAAAGGCACTCTTTTAGTGGAACGACCCAtatatttctttttttcttttgtgtatttttttgtgatgacGACAAATAATATTGTTAATGTATTTATGGTATCATTTATCTTGCTATCTATTCTCCCACAGGAAGATATATATTTTATGTATTGCTGTTTAATAATTGCAGTTTCTGAACACTGAGAACTTCAAATGGGTGAATCCCAAAACATGCctggttttctaactcctcctgACATTTGTAGTGTAAAATAAACAGTACTGATATATATGCAATAA

Function

NR:

description
transmembrane protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591294.2 False 2382 mRNA 0.42 3 30845842 30863487
XR_002471522.2 False 2312 mRNA 0.42 4 30845842 30863487
XR_005040442.1 True 2242 mRNA 0.42 4 30845842 30863487

Neighbor

gene id symbol gene type direction distance location
LOC110510021 LOC106563440 coding downstream 164535 30669592 ~ 30681307 (-)
klhl13 LOC106563441 coding downstream 194394 30575393 ~ 30651448 (-)
LOC110510017 LOC106563443 coding downstream 294546 30549215 ~ 30551296 (-)
LOC110510015 LOC106563445 coding downstream 310471 30527165 ~ 30535371 (-)
si:ch1073-224n8.1 LOC106563446 coding downstream 331773 30449003 ~ 30514069 (-)
LOC110509413 LOC106563430 coding upstream 196784 31060271 ~ 31191126 (-)
LOC110509414 LOC106563553 coding upstream 340106 31203593 ~ 31204637 (-)
LOC110509415 LOC106563553 coding upstream 343977 31207464 ~ 31208521 (-)
LOC118945323 NA coding upstream 433765 31297252 ~ 31304030 (-)
LOC118945266 NA coding upstream 695346 31558833 ~ 31560156 (-)
G2174560 NA non-coding downstream 2681 30842929 ~ 30843161 (-)
G2174558 NA non-coding downstream 4550 30838766 ~ 30841292 (-)
G2174543 NA non-coding downstream 32822 30810612 ~ 30813020 (-)
G2174544 NA non-coding downstream 35461 30806216 ~ 30810381 (-)
G2174512 NA non-coding downstream 53439 30749790 ~ 30792403 (-)
G2174576 NA non-coding upstream 15610 30879097 ~ 30879307 (-)
G2174582 NA non-coding upstream 49548 30913035 ~ 30913743 (-)
G2174860 NA non-coding upstream 94629 30958116 ~ 30959974 (-)
G2174929 NA non-coding upstream 214404 31077891 ~ 31079646 (-)
G2174933 NA non-coding upstream 227719 31091206 ~ 31093249 (-)
G2174463 NA other downstream 172741 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 533061 30299615 ~ 30312873 (-)
G2174100 NA other downstream 868275 29975363 ~ 29977567 (-)
G2174066 NA other downstream 900424 29944465 ~ 29945418 (-)
G2173258 LOC106563498 other downstream 1417975 29424723 ~ 29427867 (-)
G2174894 NA other upstream 140268 31003755 ~ 31006435 (-)
G2175135 NA other upstream 656565 31520052 ~ 31521188 (-)
G2175418 LOC106563537 other upstream 738962 31602449 ~ 31688677 (-)
G2175420 NA other upstream 805847 31669334 ~ 31673189 (-)
G2175503 NA other upstream 858465 31721952 ~ 31726394 (-)

Expression


Co-expression Network