tnfsf13 (tnfsf13)


Basic Information

Item Value
gene id tnfsf13
gene name tnfsf13
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31604094 ~ 31607229 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590213.2
GAAGAAAGTGAAAGTGCACATTGTAACGGGATCATTACGGCCCTGACAAAGCCTTCATTGAAAAAGGACGCCATCCCCTCGTCCTCGTAACAGTTGGTATCGCCTGTGTGACATAATGACAAACCGTTATACAGTACATTTTCATGGCTCATATCTGCTGTACGCTGTGTCGCTGTTCTTGGCCTGCTTGATGGTCCTGCAGTCCAACCAGGTCAGAGAGATGCAGGTCGAACTGCGGGAGCTGCGTCAGTGGACCAGTCTGGTGTGCGGGGACATAAAGGAATCGTCTACTGATATCTCGCGCTGCGGGATATCTGACTCTCACAGACATACACAATGGAATGGAATTCGAGGAAAGAGGGAGATTTCAAGACATGGGAGACGGAGACAGCGGCGCACTGCAGGGAGTAGTGCCTTTCTTCATCTTGTTCCTCTGTCATCACACTCATATGATGAAGATGATTACACTCTGGTAGAATGGGCTCTAGGACTGAGTCGTCTAGGGGAGGGGCTGCAGGTCTCTGGAGAAAAGGTCACCGTGGTAACCGAAGGGACTTACTTCATCTACAGTCAGGTGCTGTATAAAGACACCACATGGACTATGGGTCATGTCATCAAGAAGCGTCTACATGGTATTGAGACCATCTTGATGAAGTGCATACAGAGTATGCCCAGCAACATCACTGTGGCCCAAAACACCTGCTACACAGCCGGTGTCCATTACCTGGAGCCAGGATCCACTCTGGAACTCTCCATTCCCAGGAAATCTGCTGGGCTTGTCCTCAAGCCTCACTCCACCTTCCTTGGCATGTTCAGGATCTGACACTGAGTGACGATCTAACACAAAACCATGTCTCTCCAGAACCCTACAATCACTGCCTATAATAACCCGACATGCTGACCTACTGCATTGTGTTGCCTGATATTTAATAAACTCTTATCAATATCAAAAGTTTTGCAAGTACTACTCAGCCAGTGTTTTCCTTTCAGCACTCATATTGCGGTAGCCTGATACAGAACAGTCACCAAATATCACAAAATGTAGCCTATTTTAGCATCGGAAAGTGCACAGATGTAATGTTTTAATTCCATGATAGAAAATACATAGGATATTAATCAAGCAAAATAGTGCAGTAGTACAGTGACCCAATATCAAATTTCAAGTTTTAATGATACgtacacaagtacagtgaaatgtcttTCTTGCTAGCTCTAAACAGTACAGTGAGTGGTGACCCAATATGAGTACAGTGTACAGCATCATTGTGAATTTCCCTCTGCTAAATTAAACTTTCTCAGTTTGC
>NM_001124671.1
ATGACAAACCGTTATACAGTACATTTTCATGGCTCATATCTGCTGTACGCTGTGTCGCTGTTCTTGGCCTGCTTGATGGTCCTGCAGTCCAACCAGGTCAGAGAGATGCAGGTCGAACTGCGGGAGCTGCGTCAGTGGACCAGTCTGGTGTGCGGGGACATAAAGGAATCGTCTACTGATATCTCGCGCTGCGGGATATCTGACTCTCACAGACATACACAATGGAATGGAATTCGAGGAAAGAGGGAGATTTCAAGACATGGGAGACGGAGACAGCGGCGCACTGGGAGTAGTGCCTTTCTTCATCTTGTTCCTCTGTCATCACACTCATATGATGAAGATGATTACACTCTGGTAGAATGGGCTCTAGGACTGAGTCGTCTAGGGGAGGGGCTGCAGGTCTCTGGAGAAAAGGTCACCGTGGTAACCGAAGGGACTTACTTCATCTACAGTCAGGTGCTGTATAAAGACACCACATGGACTATGGGTCATGTCATCAAGAAGCGTCTACATGGTATTGAGACCATCTTGATGAAGTGCATACAGAGTATGCCCAGCAACATCACTGTGGCCCAAAACACCTGCTACACAGCCGGTGTCCATTACCTGGAGCCAGGATCCACTCTGGAACTCTCCATTCCCAGGAAATCTGCTGGGCTTGTCCTCAAGCCTCACTCCACCTTCCTTGGCATGTTCAGGATCTGA
>TU2486465
ACATAATGACAAACCGTTATACAGTACATTTTCATGGCTCATATCTGCTGTACGCTGTGTCGCTGTTCTTGGCCTGCTTGATGGTCCTGCAGTCCAACCAGGTCAGAGAGATGCAGGTCGAACTGCGGGAGCTGCGTCAGTGGACCAGTCTGGTGTGCGGGGACATAAAGGAATCGTCTACTGATATCTCGCGCTGCGGGGTAGATATCTGACTCTCACAGACATACACAATGGAATGGAATTCGAGGAAAGAGGGAGATTTCAAGACATGGGAGACGGAGACAGCGGCGCACTGCAGGGAGTAGTGCCTTTCTTCATCTTGTTCCTCTGTCATCACACTCATATGATGAAGATGATTACACTCTGGTAGAATGGGCTCTAGGACTGAGTCGTCTAGGGGAGGGGCTGCAGGTCTCTGGAGAAAAGGTCACCGTGGTAACCGAAGGGACTTACTTCATCTACAGTCAGGTGCTGTATAAAGACACCACATGGACTATGGGTCATGTCATCAAGAAGCGTCTACATGGTATTGAGACCATCTTGATGAAGTGCATACAGAGTATGCCCAGCAACATCACTGTGGCCCAAAACACCTGCTACACAGCCGGTGTCCATTACCTGGAGCCAGGATCCACTCTGGAACTCTCCATTCCCAGGAAATCTGCTGGGCTTGTCCTCAAGCCTCACTCCACCTTCCTTGGCATGTTCAGGATCTGACACTGAGTGACGATCTAACACAAAACCATGTCTCTCCAGAACCCTACAATCACTGCCTATAATAACCCGACATGCTGACCTACTGCATTGTGTTGCCTG

Function

symbol description
tnfsf13 Predicted to enable receptor ligand activity. Acts upstream of or within lymphocyte homeostasis. Located in cell surface. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma. Orthologous to human TNFSF13 (TNF superfamily member 13).

NR:

description
tumor necrosis factor ligand superfamily member 13 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590213.2 False 1304 mRNA 0.45 6 31604094 31607229
NM_001124671.1 False 705 mRNA 0.50 6 31604575 31607114
TU2486465 True 816 lncRNA 0.50 6 31604476 31607119

Neighbor

gene id symbol gene type direction distance location
LOC118945266 NA coding downstream 43938 31558833 ~ 31560156 (-)
LOC118945323 NA coding downstream 300064 31297252 ~ 31304030 (-)
LOC110509415 LOC106563553 coding downstream 395573 31207464 ~ 31208521 (-)
LOC110509414 LOC106563553 coding downstream 399457 31203593 ~ 31204637 (-)
LOC110509413 LOC106563430 coding downstream 412968 31060271 ~ 31191126 (-)
LOC118945265 inca1 coding upstream 1031 31608260 ~ 31610410 (-)
LOC110510028 psmb6 coding upstream 3314 31610543 ~ 31613567 (-)
xrra1 xrra1 coding upstream 66118 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding upstream 76415 31683644 ~ 31687101 (-)
LOC110510037 LOC106563414 coding upstream 120574 31726537 ~ 31731451 (-)
G2175417 NA non-coding downstream 1705 31602171 ~ 31602389 (-)
G2175221 NA non-coding downstream 10850 31593013 ~ 31593244 (-)
G2175220 NA non-coding downstream 11330 31592420 ~ 31592764 (-)
G2175216 NA non-coding downstream 14933 31586631 ~ 31589161 (-)
G2175215 NA non-coding downstream 16212 31586448 ~ 31587882 (-)
G2175441 NA non-coding upstream 23524 31630753 ~ 31652199 (-)
G2175451 NA non-coding upstream 31770 31638999 ~ 31642137 (-)
G2175459 NA non-coding upstream 49880 31657109 ~ 31659689 (-)
G2175418 LOC106563537 non-coding upstream 76420 31602449 ~ 31688677 (-)
G2175489 NA non-coding upstream 99812 31707041 ~ 31707373 (-)
G2175135 NA other downstream 82906 31520052 ~ 31521188 (-)
G2174894 NA other downstream 597659 31003755 ~ 31006435 (-)
G2174463 NA other downstream 930993 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1291313 30299615 ~ 30312873 (-)
G2174100 NA other downstream 1626527 29975363 ~ 29977567 (-)
G2175420 NA other upstream 62105 31669334 ~ 31673189 (-)
G2175503 NA other upstream 114723 31721952 ~ 31726394 (-)
LOC110509376 LOC107567170 other upstream 129684 31736713 ~ 31738259 (-)
G2175969 LOC100194703 other upstream 656054 32263283 ~ 32266089 (-)

Expression


Co-expression Network