LOC118945265 (inca1)


Basic Information

Item Value
gene id LOC118945265
gene name inca1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31608260 ~ 31610410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967302.1
TCACCTTCTTTGCTGTGAGTTGGAAGTAGACTAAACACAACACCATTTCCAAGATGTATAGTGAGGAATGCAGACAGACATCATGGGGAGGACTTTTAACAAAAACTACCCCGAGAAATGTTGCATGCCAAGCAATACGGACTTGAAGAGGTGACGCCAAGGAGTAGATCTATTACGTTGATCTGCTGTGTATTTTCCTCTCGTGCTGCTGACTTTATGGCACGCGCTCACGTTTTGCGCGGGACTTTGATATCGTTTGTTGGCCTTAAATGCAGGCTGGATTGGAAACcggctggctaacgttagcctaTTAAAATTTGTTTTTATTGTAGGGTCGTTCTGGTATTGGCTAGGATACCAGGCAATAGTTTTATTTCAAGACTATTATTAATTGATTAAAGGTCACGTTCTACATTAGTATTCGTATTTCAGCTGATTTTCCCTCCCAGGGTAACAATGTGGCACCTAGCAGACAGAGTTGTTAATAATGCTGGGCATTTTACTCCGGTAGAACAACCAGAGGCAGAAGATGGTGATCAGTTCCTCTCGTTTGCCAAGAGGTCCAAGGTTGTGCAGCGTCAGTGTTCAGAGATGGAGACTGAGCCTAGCCCTCCCCCACAGTCTAGCTCCTTGTCTCAGAGTAGAGACAATTTCTGGCACAGGATTCTATGTCAGCCAAGTGAAGTGTCTCCTGAGCCCACCCCATCCTACGGCCCAGTTCAGATGCAGATGTTCTCAAATAAACCTGAAGGACTAGTTGGTGTGGACATGGCAGGATCACCTCCAGCAGGACAGAGAGTTAAAAAAGGGGGAAGGCTGGGTCTAGGAAAGCTACCTTCTCCAGTGGAACTGATGGGCCGGAAGAAGAAGGGGAGGACAGGGGGTGCAGCACAGAGCAGCCAGGTGGTGCAACCCAGGGTGGCAGCAGTGCTGCAGCACATTGGGGACCTCCGCAGGAGACAGAGCTCTATTGACCAGTTGAAGCGGGGGAGTTGGTGGGGCTCCAAACCCAGGTGTAAGGCAGAAAAGGGCTGTTCCCAGAGGCAAGCAGATGACAGCAGCATGACTATCAGCACCACAGTGGAGAAGCAGGATGAAGCTACGGACTACCTCAGTCCAACCCTCACTCGTCCTTACACCCAGAAGGAGGCATGGACTCAACTCTCACTGACTGATATTATATTTAAGAGTAACTGGAATTGAGGAAGCAAATGTGGATATCCCTTATACGACTGTGATGTCT

Function

symbol description
inca1 Enables cyclin binding activity; cyclin-dependent protein serine/threonine kinase inhibitor activity; and identical protein binding activity. Acts upstream of or within negative regulation of cyclin-dependent protein serine/threonine kinase activity. Located in cytoplasm and nuclear body.

NR:

description
PREDICTED: protein INCA1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967302.1 True 1243 mRNA 0.49 5 31608260 31610410

Neighbor

gene id symbol gene type direction distance location
tnfsf13 tnfsf13 coding downstream 1031 31604094 ~ 31607229 (-)
LOC118945266 NA coding downstream 48104 31558833 ~ 31560156 (-)
LOC118945323 NA coding downstream 304230 31297252 ~ 31304030 (-)
LOC110509415 LOC106563553 coding downstream 399739 31207464 ~ 31208521 (-)
LOC110509414 LOC106563553 coding downstream 403623 31203593 ~ 31204637 (-)
LOC110510028 psmb6 coding upstream 133 31610543 ~ 31613567 (-)
xrra1 xrra1 coding upstream 62937 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding upstream 73234 31683644 ~ 31687101 (-)
LOC110510037 LOC106563414 coding upstream 117393 31726537 ~ 31731451 (-)
LOC110509376 LOC107567170 coding upstream 126303 31736713 ~ 31738259 (-)
G2175417 NA non-coding downstream 5871 31602171 ~ 31602389 (-)
G2175221 NA non-coding downstream 15016 31593013 ~ 31593244 (-)
G2175220 NA non-coding downstream 15496 31592420 ~ 31592764 (-)
G2175216 NA non-coding downstream 19099 31586631 ~ 31589161 (-)
G2175441 NA non-coding upstream 20343 31630753 ~ 31652199 (-)
G2175451 NA non-coding upstream 28589 31638999 ~ 31642137 (-)
G2175459 NA non-coding upstream 46699 31657109 ~ 31659689 (-)
G2175418 LOC106563537 non-coding upstream 73239 31602449 ~ 31688677 (-)
G2175489 NA non-coding upstream 96631 31707041 ~ 31707373 (-)
G2175135 NA other downstream 87072 31520052 ~ 31521188 (-)
G2174894 NA other downstream 601825 31003755 ~ 31006435 (-)
G2174463 NA other downstream 935159 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1295479 30299615 ~ 30312873 (-)
G2174100 NA other downstream 1630693 29975363 ~ 29977567 (-)
G2175420 NA other upstream 58924 31669334 ~ 31673189 (-)
G2175503 NA other upstream 111542 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 652873 32263283 ~ 32266089 (-)

Expression


Co-expression Network