xrra1 (xrra1)


Basic Information

Item Value
gene id xrra1
gene name xrra1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31673347 ~ 31688712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591309.2
TTGTTGACGTGTTGCTAGGATACCGGAGTCTTGACTGATTGGATGTTTATCCATGTACGCACATCatgaaaaatgtgtttgttttttatgtcTGGCTGGTAAATTAACAGTTATGGTAAAATAGGTCAATTTGGGCTGTAAATTGTGTAAATAATCTGGATAGCGCTCAACAAAAAGGTACTTGCTGTAGATGTAACAGTGGACGTTAATGGCTGCAGCCGGACTCTACAAATTAGATGTGGGAGACAGTTACCCCGCCAATTGTTTTCCCATCCGACCATTGTTTCATCAACGAAAAAACGGGGCTGGTCACTGGCTGGTTGCTCACCGAAATGCAGTGGAacataaatacaaaaatacacgAACTAAGAAATCAGAGGGAAACAGTTTTGCCTCAAACTCAATTGTGTCTGAGTGCACACGGGTTGAAGAGTGTGCGACATCAGATATTCCTGGCTACACATTGGATGCTCCTCTCCTGTTGTCATTGCATTGTGTGGACAAGCCATCTGACCTGTGCTCTGTTGACATCAGTGAGCAGAGATTGAATTTGATCAATACAGAAGACTTCCTGGATTTTGAGAATGTTGCTTATGTCAACGCATCTGACAACAGTCTTACCATAGAGCCTTTTGGTAAATTCCCCTCCCTGAGGGAACTTGAGCTATCCTTGAATGGCCTCTGCAATGTGACACTCAATGCGGAAGACTTCCCTCACCTGGAGGTGTTGGATTTGTCTTACAACAATCTGTCTGGTGATGACATCATGTCCGTTGGTCTACTTCCCTGTCTGAAAGTCCTTCATCTCACCGGGAATCAACTTCAGTTTCTTCCTCCCAACCTGGCAGCCCCTCCCCATGGCCCCTCACAACGCGCAAAGGATAATGGCATGCGATTTCAAACTCTTGAAGTGCTGATGCTAGATGACAATAAGCTGTCCTCTGGTGTCTTCAGCAGCCTTGCCAACCTGAAAAGGCTACAGCATTTAAACCTGCAAGGGAATCGTATCTCAGAGGTACCAGAGGTGTTGCCGAGGAACCTGCAACAGAAGGGATATCTGCAACACCAGCAGGTGTTTCACAAACAAAATTGTGACCTACAGGACCTCAGGAATCACCGTTTCTTTGAGGGGTTAGAGACTGAATACATGAATGCCGTCTCCGGTGTTCCGGAAAACCAGCATGAACATATCAAGAACAGTTCAGAGGATGAGTGTGGTCAATCCAAAAACGATTCCCCCATTCGCATATCCCTTGACACTGAGGAATTTTCTGGAGCATACGGTTTGCCACTACCAGAGCTTTGTTTCCTCAATCTGGCTGACAATAAGATTGTTGAGGAAGAAGCACTGTTGTCTGTGGCCCTGTTTCCTATGCTCAGTGAGATTGTTATTCACTCCAACCCACTGACCACACAGAGAAGTGGTGACCCACCACTTCTGACATACTTTCTCCAGGAAAGGTTGGGTATTAGAATTAGGCGCAAAAAGACATCAGAAGTTGTGAAGCCCCCTTTGATATTATGTATTGACTCAAAACGAAAGgtaaaaaacaaaatcccaaaggTAACAAAGGTGCCTTTATTGATTCTCCTTGAAGAACCTTCTAGTCCTGCCTTACTTGATCCTGGCTCTCTGGAGGAGAAGCATGTTGAAGATCACTGTACGAATCCTCTCTCAGTAGAGAGAAAGTCAACAGAAAAGTCTGGCTGCTCCTCACACGCAATGGATGAGGAAAATAAACAGGAATCCATGGGAACTGCTCATAGAGTCGAGGCCATAGAGGATGCAATAGAATCATCAGATGATACCTTCCAACATGGAGAGTCATTCTTTGTGACGCAGGTGACAGATTTACATGATGAATCTGAATACCATCTGCTATCTGACGAGACAGAAGAAGTCAAAGAGATTCAGGAGAAAAATGAGTCAAATGCAATTCCAGGAAAATTCAGAGGCTTTGAATTGCTATTGGATGCCAAACCAGATCCAGACATGGTGGAGCCTGTTGGACTACAACACACTGTGAGAATGTTGGAACAAAAACTCAAGAATCTCCTAGTTTACAGAGATTCCAAACCTAACCTTGATTGCCTGCAGAAGCCATatgaagagaaggagaaaaggATTGGAAATCTACCATCTCTGAGACCAAGAaagcagagaggagaaagagttgAAGAGATGCTCATACAAATAAACGAGAGGAAAACAATCAGCGAAATCCCTCTAACTAACGTCTTAGAAGGCAAGGGCGTCTTCAAGGATGAGTATGAAGAGGCTTTGACTTTGCTGAGGGATATGAAGAAAAGGTACAAGATGGTTCACATGAAGGCAGTGGAGCAAGCAACACATATTGAGTATGAGAGGACCACCAACCACAAGTAGAGATTCACAAACTCTGTTACTTTCATGAAACATGAACATTAAACAATCAACCAAACACTCTTCTTCCAATTTAGGTGAAGAGAATGATCAGCTACAAATTATTTCTGGGCTGAAGGGAAAACGTTCTTATTGAGTTTATTTAGCCCATCTATGACAACTGTTAATGTATAACATAATGTATATGTATAACATTATCATCATGCATTTGTTTGTCTTTCATTATTAAATAGCTCTGTTTCAACTTTATTCAACCTTGACAAGAAGGTGACAGTGGATCTTGCAAATGGAGACACTGTCACCCAGGCTCATGGCAGTTTTGTATTTCAGTGGGGTATCAATAAAATCTGTTTTAATAAAATAGTTGGTAAAACAATCTAA
>XM_036967835.1
TACTATTAACCAAATACCGGCAGTGCACTACAGAAGTTGTTCAGCGGTGGAGGAGGCCTGGACGAGATGGGTGAAACATGCTTGGATGAGAAGGAATTTGATGACTGGTTTATCGAGTCTTTGAAAATGTAAGTACGAGGTATTTTGTGAAAGTGAGTTGAGACTTCCATGATGTCTTTTAGTTGCATAAATGATGCTTCACATCACACGTCtctgcaggaaaacaacagggGTACATTCACAGGCGTAACGTTTTAGGACGTTGTAGATAGGACTAGGTTATAGATCAAAGTAGCCCCTATACACCTCCCTTTCAGATACAATAATATTCATGAGTATCAACTTGAACATCCTACAAAAGTAATTGAATGGACCACAGAAAAAGGTAGGCCTATTCATAATTGGCCCATGTTATAAGGCAGTACATTTGGATTATAACCAACAACATTGATTGTGTTTTATTGCCCTTTTGTCTTTACCTCACAGCTATCTGTGTCGCAGGTTACAGTTGATCTAAAAATGACATTTTAGAGCTGCTTTTGCCTCTGAAGCtctttgctgatgacaattaGGTAATGGATTGAAATGATAAATACTTCACGATATCAGTGATGAATTGGAATGTCAGTGACTGCCAAGGTGTCTGTCTATTCAAGGTGTGCAGGGTCTTTGTGCAGTGCGAGATGTCAAAGTGGTCCTTGGAGGTTTCTCAGATGGCGCCGTTCATTGCCTTAAACACATTCCAGGAACAAGGGGCTGGTCACTGGCTGGTTGCTCACCGAAATGCAGTGGAacataaatacaaaaatacacgAACTAAGAAATCAGAGGGAAACAGTTTTGCCTCAAACTCAATTGTGTCTGAGTGCACACGGGTTGAAGAGTGTGCGACATCAGATATTCCTGGCTACACATTGGATGCTCCTCTCCTGTTGTCATTGCATTGTGTGGACAAGCCATCTGACCTGTGCTCTGTTGACATCAGTGAGCAGAGATTGAATTTGATCAATACAGAAGACTTCCTGGATTTTGAGAATGTTGCTTATGTCAACGCATCTGACAACAGTCTTACCATAGAGCCTTTTGGTAAATTCCCCTCCCTGAGGGAACTTGAGCTATCCTTGAATGGCCTCTGCAATGTGACACTCAATGCGGAAGACTTCCCTCACCTGGAGGTGTTGGATTTGTCTTACAACAATCTGTCTGGTGATGACATCATGTCCGTTGGTCTACTTCCCTGTCTGAAAGTCCTTCATCTCACCGGGAATCAACTTCAGTTTCTTCCTCCCAACCTGGCAGCCCCTCCCCATGGCCCCTCACAACGCGCAAAGGATAATGGCATGCGATTTCAAACTCTTGAAGTGCTGATGCTAGATGACAATAAGCTGTCCTCTGGTGTCTTCAGCAGCCTTGCCAACCTGAAAAGGCTACAGCATTTAAACCTGCAAGGGAATCGTATCTCAGAGGTACCAGAGGTGTTGCCGAGGAACCTGCAACAGAAGGGATATCTGCAACACCAGCAGGTGTTTCACAAACAAAATTGTGACCTACAGGACCTCAGGAATCACCGTTTCTTTGAGGGGTTAGAGACTGAATACATGAATGCCGTCTCCGGTGTTCCGGAAAACCAGCATGAACATATCAAGAACAGTTCAGAGGATGAGTGTGGTCAATCCAAAAACGATTCCCCCATTCGCATATCCCTTGACACTGAGGAATTTTCTGGAGCATACGGTTTGCCACTACCAGAGCTTTGTTTCCTCAATCTGGCTGACAATAAGATTGTTGAGGAAGAAGCACTGTTGTCTGTGGCCCTGTTTCCTATGCTCAGTGAGATTGTTATTCACTCCAACCCACTGACCACACAGAGAAGTGGTGACCCACCACTTCTGACATACTTTCTCCAGGAAAGGTTGGGTATTAGAATTAGGCGCAAAAAGACATCAGAAGTTGTGAAGCCCCCTTTGATATTATGTATTGACTCAAAACGAAAGgtaaaaaacaaaatcccaaaggTAACAAAGGTGCCTTTATTGATTCTCCTTGAAGAACCTTCTAGTCCTGCCTTACTTGATCCTGGCTCTCTGGAGGAGAAGCATGTTGAAGATCACTGTACGAATCCTCTCTCAGTAGAGAGAAAGTCAACAGAAAAGTCTGGCTGCTCCTCACACGCAATGGATGAGGAAAATAAACAGGAATCCATGGGAACTGCTCATAGAGTCGAGGCCATAGAGGATGCAATAGAATCATCAGATGATACCTTCCAACATGGAGAGTCATTCTTTGTGACGCAGGTGACAGATTTACATGATGAATCTGAATACCATCTGCTATCTGACGAGACAGAAGAAGTCAAAGAGATTCAGGAGAAAAATGAGTCAAATGCAATTCCAGGAAAATTCAGAGGCTTTGAATTGCTATTGGATGCCAAACCAGATCCAGACATGGTGGAGCCTGTTGGACTACAACACACTGTGAGAATGTTGGAACAAAAACTCAAGAATCTCCTAGTTTACAGAGATTCCAAACCTAACCTTGATTGCCTGCAGAAGCCATatgaagagaaggagaaaaggATTGGAAATCTACCATCTCTGAGACCAAGAaagcagagaggagaaagagttgAAGAGATGCTCATACAAATAAACGAGAGGAAAACAATCAGCGAAATCCCTCTAACTAACGTCTTAGAAGGCAAGGGCGTCTTCAAGGATGAGTATGAAGAGGCTTTGACTTTGCTGAGGGATATGAAGAAAAGGTACAAGATGGTTCACATGAAGGCAGTGGAGCAAGCAACACATATTGAGTATGAGAGGACCACCAACCACAAGTAGAGATTCACAAACTCTGTTACTTTCATGAAACATGAACATTAAACAATCAACCAAACACTCTTCTTCCAATTTAGGTGAAGAGAATGATCAGCTACAAATTATTTCTGGGCTGAAGGGAAAACGTTCTTATTGAGTTTATTTAGCCCATCTATGACAACTGTTAATGTATAACATAATGTATATGTATAACATTATCATCATGCATTTGTTTGTCTTTCATTATTAAATAGCTCTGTTTCAACTTTATTCAACCTTGACAAGAAGGTGACAGTGGATCTTGCAAATGGAGACACTGTCACCCAGGCTCATGGCAGTTTTGTATTTCAGTGGGGTATCAATAAAATCTGTTTTAATAAAATAGTTGGTAAAACAATCTAA
>XM_036967836.1
ATCTACTATTAACCAAATACCGGCAGTGCACTACAGAAGTTGTTCAGCGGTGGAGGAGGCCTGGACGAGATGGGTGAAACATGCTTGGATGAGAAGGAATTTGATGACTGGTTTATCGAGTCTTTGAAAATGTGTGCAGGGTCTTTGTGCAGTGCGAGATGTCAAAGTGGTCCTTGGAGGTTTCTCAGATGGCGCCGTTCATTGCCTTAAACACATTCCAGGAACAAGGGGCTGGTCACTGGCTGGTTGCTCACCGAAATGCAGTGGAacataaatacaaaaatacacgAACTAAGAAATCAGAGGGAAACAGTTTTGCCTCAAACTCAATTGTGTCTGAGTGCACACGGGTTGAAGAGTGTGCGACATCAGATATTCCTGGCTACACATTGGATGCTCCTCTCCTGTTGTCATTGCATTGTGTGGACAAGCCATCTGACCTGTGCTCTGTTGACATCAGTGAGCAGAGATTGAATTTGATCAATACAGAAGACTTCCTGGATTTTGAGAATGTTGCTTATGTCAACGCATCTGACAACAGTCTTACCATAGAGCCTTTTGGTAAATTCCCCTCCCTGAGGGAACTTGAGCTATCCTTGAATGGCCTCTGCAATGTGACACTCAATGCGGAAGACTTCCCTCACCTGGAGGTGTTGGATTTGTCTTACAACAATCTGTCTGGTGATGACATCATGTCCGTTGGTCTACTTCCCTGTCTGAAAGTCCTTCATCTCACCGGGAATCAACTTCAGTTTCTTCCTCCCAACCTGGCAGCCCCTCCCCATGGCCCCTCACAACGCGCAAAGGATAATGGCATGCGATTTCAAACTCTTGAAGTGCTGATGCTAGATGACAATAAGCTGTCCTCTGGTGTCTTCAGCAGCCTTGCCAACCTGAAAAGGCTACAGCATTTAAACCTGCAAGGGAATCGTATCTCAGAGGTACCAGAGGTGTTGCCGAGGAACCTGCAACAGAAGGGATATCTGCAACACCAGCAGGTGTTTCACAAACAAAATTGTGACCTACAGGACCTCAGGAATCACCGTTTCTTTGAGGGGTTAGAGACTGAATACATGAATGCCGTCTCCGGTGTTCCGGAAAACCAGCATGAACATATCAAGAACAGTTCAGAGGATGAGTGTGGTCAATCCAAAAACGATTCCCCCATTCGCATATCCCTTGACACTGAGGAATTTTCTGGAGCATACGGTTTGCCACTACCAGAGCTTTGTTTCCTCAATCTGGCTGACAATAAGATTGTTGAGGAAGAAGCACTGTTGTCTGTGGCCCTGTTTCCTATGCTCAGTGAGATTGTTATTCACTCCAACCCACTGACCACACAGAGAAGTGGTGACCCACCACTTCTGACATACTTTCTCCAGGAAAGGTTGGGTATTAGAATTAGGCGCAAAAAGACATCAGAAGTTGTGAAGCCCCCTTTGATATTATGTATTGACTCAAAACGAAAGgtaaaaaacaaaatcccaaaggTAACAAAGGTGCCTTTATTGATTCTCCTTGAAGAACCTTCTAGTCCTGCCTTACTTGATCCTGGCTCTCTGGAGGAGAAGCATGTTGAAGATCACTGTACGAATCCTCTCTCAGTAGAGAGAAAGTCAACAGAAAAGTCTGGCTGCTCCTCACACGCAATGGATGAGGAAAATAAACAGGAATCCATGGGAACTGCTCATAGAGTCGAGGCCATAGAGGATGCAATAGAATCATCAGATGATACCTTCCAACATGGAGAGTCATTCTTTGTGACGCAGGTGACAGATTTACATGATGAATCTGAATACCATCTGCTATCTGACGAGACAGAAGAAGTCAAAGAGATTCAGGAGAAAAATGAGTCAAATGCAATTCCAGGAAAATTCAGAGGCTTTGAATTGCTATTGGATGCCAAACCAGATCCAGACATGGTGGAGCCTGTTGGACTACAACACACTGTGAGAATGTTGGAACAAAAACTCAAGAATCTCCTAGTTTACAGAGATTCCAAACCTAACCTTGATTGCCTGCAGAAGCCATatgaagagaaggagaaaaggATTGGAAATCTACCATCTCTGAGACCAAGAaagcagagaggagaaagagttgAAGAGATGCTCATACAAATAAACGAGAGGAAAACAATCAGCGAAATCCCTCTAACTAACGTCTTAGAAGGCAAGGGCGTCTTCAAGGATGAGTATGAAGAGGCTTTGACTTTGCTGAGGGATATGAAGAAAAGGTACAAGATGGTTCACATGAAGGCAGTGGAGCAAGCAACACATATTGAGTATGAGAGGACCACCAACCACAAGTAGAGATTCACAAACTCTGTTACTTTCATGAAACATGAACATTAAACAATCAACCAAACACTCTTCTTCCAATTTAGGTGAAGAGAATGATCAGCTACAAATTATTTCTGGGCTGAAGGGAAAACGTTCTTATTGAGTTTATTTAGCCCATCTATGACAACTGTTAATGTATAACATAATGTATATGTATAACATTATCATCATGCATTTGTTTGTCTTTCATTATTAAATAGCTCTGTTTCAACTTTATTCAACCTTGACAAGAAGGTGACAGTGGATCTTGCAAATGGAGACACTGTCACCCAGGCTCATGGCAGTTTTGTATTTCAGTGGGGTATCAATAAAATCTGTTTTAATAAAATAGTTGGTAAAACAATCTAA

Function

symbol description
xrra1 Predicted to act upstream of or within response to X-ray. Orthologous to human XRRA1 (X-ray radiation resistance associated 1).

NR:

description
X-ray radiation resistance-associated protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591309.2 False 2764 mRNA 0.43 17 31673347 31678965
XM_036967835.1 False 3215 mRNA 0.42 17 31673347 31688709
XM_036967836.1 True 2690 mRNA 0.43 18 31673347 31688712

Neighbor

gene id symbol gene type direction distance location
LOC110510028 psmb6 coding downstream 59780 31610543 ~ 31613567 (-)
LOC118945265 inca1 coding downstream 62937 31608260 ~ 31610410 (-)
tnfsf13 tnfsf13 coding downstream 66118 31604094 ~ 31607229 (-)
LOC118945266 NA coding downstream 113191 31558833 ~ 31560156 (-)
LOC118945323 NA coding downstream 369317 31297252 ~ 31304030 (-)
LOC110510037 LOC106563414 coding upstream 39091 31726537 ~ 31731451 (-)
LOC110509376 LOC107567170 coding upstream 48001 31736713 ~ 31738259 (-)
LOC110510038 sycn coding upstream 51190 31739902 ~ 31740562 (-)
selenow1 selenow coding upstream 59038 31747750 ~ 31750431 (-)
ehd2a LOC106563411 coding upstream 59038 31747750 ~ 31755799 (-)
G2175459 NA non-coding downstream 13658 31657109 ~ 31659689 (-)
G2175441 NA non-coding downstream 21148 31630753 ~ 31652199 (-)
G2175451 NA non-coding downstream 31210 31638999 ~ 31642137 (-)
G2175417 NA non-coding downstream 70958 31602171 ~ 31602389 (-)
G2175489 NA non-coding upstream 18329 31707041 ~ 31707373 (-)
G2175491 NA non-coding upstream 22097 31710809 ~ 31711045 (-)
G2175480 NA non-coding upstream 31786 31720498 ~ 31797706 (-)
G2175476 selenow non-coding upstream 59061 31747773 ~ 31750415 (-)
G2175512 NA non-coding upstream 73318 31762030 ~ 31762658 (-)
G2175420 NA other downstream 158 31669334 ~ 31673189 (-)
G2175135 NA other downstream 152159 31520052 ~ 31521188 (-)
G2174894 NA other downstream 666912 31003755 ~ 31006435 (-)
G2174463 NA other downstream 1000246 30672590 ~ 30673101 (-)
LOC110510010 requ other downstream 1360566 30299615 ~ 30312873 (-)
G2175503 NA other upstream 33240 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 574571 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 596038 32282188 ~ 32287263 (-)

Expression


Co-expression Network