LOC110509376 (LOC107567170)


Basic Information

Item Value
gene id LOC110509376
gene name LOC107567170
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31736713 ~ 31738259 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590274.2
CTTACCCCTAATCTCTCTCCATTTGGAACTCTAAGTGGGTGGAGTGTGCCTTGTTCAACTATCACACCTCAACTGTAGAACCCTGGACCTACCAACCCGTCTGTCTTGTTTTTGCGTTGGACCAGGCTGAGGTACAGCGAGAGGAAGCAGGATGTCCAATAACATGGCTAAGATTGCAGATGCTCGCAAGACAGTGGAACAGCTGAAACTGGAGGTCAACATTGAAAGAATGATGGTGTCCAAAGCAGCAGCTGATCTAATGGCCTTCTGTGAGGCTCATGCCAAGGAGGACCCGCTGGTGACACCAGTGCCATCCTCTGAGAACCCCTTTCGGGAGAAGAAATTCTTCTGTGCAATACTCTGATCCCCACACTTATAACCCCAAGTTTTGTGCCATTATTAGCAAGAATTAATTGGCAGTTCTAAGGAATAAATCTGATAGTAACAGTGAAGAACACTTGAAAATGTTGGTTTTGTTATGCCTAGTCAGGGTGATGATTTTGTATTTAAAAACCTGTATAGTAAATGCTTTAAATATTGATCTGGATTGATCTGATTGACTGAAATAAACTTATTGATGATG
>XM_036967887.1
CTTACCCCTAATCTCTCTCCATTTGGAACTCTAAGTGGGTGGAGTGTGCCTTGTTCAACTATCACACCTCAACTGTAGAACCCTGGACCTACCAACCCGTCTGTCTTGTTTTTGCGTTGGACCAGGCTGAGGTACAGCGAGAGGAAGCAGGATGTCCAATAACATGGCTAAGATTGCAGATGCTCGCAAGACAGTGGAACAGCTGAAACTGGAGGTCAACATTGAAAGAATGATGCATGTTTTATATGTGCAGGTGTCCAAAGCAGCAGCTGATCTAATGGCCTTCTGTGAGGCTCATGCCAAGGAGGACCCGCTGGTGACACCAGTGCCATCCTCTGAGAACCCCTTTCGGGAGAAGAAATTCTTCTGTGCAATACTCTGATCCCCACACTTATAACCCCAAGTTTTGTGCCATTATTAGCAAGAATTAATTGGCAGTTCTAAGGAATAAATCTGATAGTAACAGTGAAGAACACTTGAAAATGTTGGTTTTGTTATGCCTAGTCAGGGTGATGATTTTGTATTTAAAAACCTGTATAGTAAATGCTTTAAATATTGATCTGGATTGATCTGATTGACTGAAATAAACTTATTGATGATG
>TU2486563
GGAACTCTAAGTGGGTGGAGTGTGCCTTGTTCAACTATCACACCTCAACTGTAGAACCCTGGACCTACCAACCCGTCTGTCTTGTTTTTGCGTTGGACCAGGCTGAGGTACAGCGAGAGGAAGCAGGATGTCCAATAACATGGCTAAGATTGCAGATGCTCGCAAGACAGTGGAACAGCTGAAACTGGAGGTCAACATTGAAAGAATGATGGTGTCCAAAGCAGCAGCTGATCTAATGGCCTTCTGTGAGGCTCATGCCAAGGAGGACCCGCTGGTGACACCAGTGCCATCCTCTGAGAACCCCTTTCGGGAGAAGAAATTCTTCTGTGCAATACTCTGATCCCCACACTTATAACCCC

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590274.2 False 583 mRNA 0.43 3 31736713 31738259
XM_036967887.1 False 601 mRNA 0.43 3 31736713 31738259
TU2486563 True 359 TUCP 0.50 3 31736913 31738235

Neighbor

gene id symbol gene type direction distance location
LOC110510037 LOC106563414 coding downstream 5262 31726537 ~ 31731451 (-)
xrra1 xrra1 coding downstream 48001 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding downstream 49612 31683644 ~ 31687101 (-)
LOC110510028 psmb6 coding downstream 123146 31610543 ~ 31613567 (-)
LOC118945265 inca1 coding downstream 126303 31608260 ~ 31610410 (-)
LOC110510038 sycn coding upstream 1643 31739902 ~ 31740562 (-)
selenow1 selenow coding upstream 9491 31747750 ~ 31750431 (-)
ehd2a LOC106563411 coding upstream 9491 31747750 ~ 31755799 (-)
si:dkeyp-117b8.4 LOC106563408 coding upstream 19069 31757328 ~ 31761267 (-)
rsph4a LOC106563409 coding upstream 33640 31771899 ~ 31778015 (-)
G2175491 NA non-coding downstream 25668 31710809 ~ 31711045 (-)
G2175489 NA non-coding downstream 29340 31707041 ~ 31707373 (-)
G2175418 LOC106563537 non-coding downstream 48036 31602449 ~ 31688677 (-)
G2175459 NA non-coding downstream 77024 31657109 ~ 31659689 (-)
G2175451 NA non-coding downstream 94576 31638999 ~ 31642137 (-)
G2175476 selenow non-coding upstream 9514 31747773 ~ 31750415 (-)
G2175512 NA non-coding upstream 23771 31762030 ~ 31762658 (-)
G2175520 NA non-coding upstream 68034 31806293 ~ 31806703 (-)
G2175519 NA non-coding upstream 69205 31807464 ~ 31807891 (-)
G2175521 NA non-coding upstream 70771 31809030 ~ 31809693 (-)
G2175503 NA other downstream 10319 31721952 ~ 31726394 (-)
G2175420 NA other downstream 63524 31669334 ~ 31673189 (-)
G2175135 NA other downstream 215525 31520052 ~ 31521188 (-)
G2175969 LOC100194703 other upstream 525024 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 546491 32282188 ~ 32287263 (-)
cpi1 cpi1 other upstream 693251 32395346 ~ 32433641 (-)
G2176363 NA other upstream 905143 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1773037 33511296 ~ 33512326 (-)

Expression


Co-expression Network