LOC110510038 (sycn)


Basic Information

Item Value
gene id LOC110510038
gene name sycn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31739902 ~ 31740562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591315.2
GCACCCCTTCTGTCTAGACACCAACGAAGCAACCATGAAGGTGATGATCGCTCTGCTTCTGAGCACTTTGTGCTTTGAAGTCCTCAATGCCCAATGCCCAGAAGCCAATGCGTTGAAAGACGCAGATGGCGTGAAGCTTTGCGCACGTATGTTCGAGGACAGTCACTATTATTACGAGCAGAGTTGTGGGGGAGAGTACCTTGATGCTTACCCAGGTGAGGACGTCCCTATCATCCCATGGCGCTGGAACAACCGCATCTCTTCCTTGGTGGTGTCAAGAGGTTGCAGCCTTACTGTTTGGAAATACACCAAGAAGAGAGGAAGCAAATCTAAATTCGGTGCTGGAATCAAATATCGCCTCAAAGAAACGATGCAAGGTCTTTTCGGGGATTGGGAAAACGACATCTCTGGATACTACTGTGTGTGCTAGAGGCCAACATCATCACGTTCACCAGACACTTCTACCCATTCCTCAGAATTGTTATGCGCAATTAGCCCGAGGACGAGTTTAGAGATCATGCAAGAAGAGAGTATGTCAGCAGGAGAGTCTGCCAACAGGAGAGTCTGCCAACAGAAGAGTCTGCCAATCAAAACAGAGACTATGTTGAGTGCATGATAATGATATCCTGTGTCTGGAGAATAAATGTATTTCTGCATATCA

Function

symbol description
sycn Predicted to be involved in exocytosis. Predicted to be active in secretory granule membrane.

NR:

description
syncollin

GO: NA

KEGG:

id description
K19935 SYCN; syncollin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591315.2 True 661 mRNA 0.47 1 31739902 31740562

Neighbor

gene id symbol gene type direction distance location
LOC110509376 LOC107567170 coding downstream 1643 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 coding downstream 8451 31726537 ~ 31731451 (-)
xrra1 xrra1 coding downstream 51190 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding downstream 52801 31683644 ~ 31687101 (-)
LOC110510028 psmb6 coding downstream 126335 31610543 ~ 31613567 (-)
selenow1 selenow coding upstream 7188 31747750 ~ 31750431 (-)
ehd2a LOC106563411 coding upstream 7188 31747750 ~ 31755799 (-)
si:dkeyp-117b8.4 LOC106563408 coding upstream 16766 31757328 ~ 31761267 (-)
rsph4a LOC106563409 coding upstream 31337 31771899 ~ 31778015 (-)
sympk sympk coding upstream 37583 31778145 ~ 31789447 (-)
G2175491 NA non-coding downstream 28857 31710809 ~ 31711045 (-)
G2175489 NA non-coding downstream 32529 31707041 ~ 31707373 (-)
G2175418 LOC106563537 non-coding downstream 51225 31602449 ~ 31688677 (-)
G2175459 NA non-coding downstream 80213 31657109 ~ 31659689 (-)
G2175451 NA non-coding downstream 97765 31638999 ~ 31642137 (-)
G2175476 selenow non-coding upstream 7211 31747773 ~ 31750415 (-)
G2175512 NA non-coding upstream 21468 31762030 ~ 31762658 (-)
G2175520 NA non-coding upstream 65731 31806293 ~ 31806703 (-)
G2175519 NA non-coding upstream 66902 31807464 ~ 31807891 (-)
G2175521 NA non-coding upstream 68468 31809030 ~ 31809693 (-)
G2175503 NA other downstream 13508 31721952 ~ 31726394 (-)
G2175420 NA other downstream 66713 31669334 ~ 31673189 (-)
G2175969 LOC100194703 other upstream 522721 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 544188 32282188 ~ 32287263 (-)
cpi1 cpi1 other upstream 690948 32395346 ~ 32433641 (-)
G2176363 NA other upstream 902840 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1770734 33511296 ~ 33512326 (-)

Expression


Co-expression Network