selenow1 (selenow)


Basic Information

Item Value
gene id selenow1
gene name selenow
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31747750 ~ 31750431 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591317.2
ttctctcctgtgtgaacgggGACCTCATGAAGATGATTCGTGGGTCGCTCCGCCTTATTTATTTCATAACAACGTCAAATATCAAGGAAATAGCTTTACACCGACAACCCTTTTGCAACTACTATCTCTCTCGGAGAAGGGCTGCTGCGATTTGCGATATGGGAGTCAAAGTTCATATCATCTACTGCGGTGGATGAGGGTACAGGCCCAAGTTCACCAGACTCAAGACACAGCTTGAGGATGAATTCCCAGGTGATCTTGAGATTACTGGTGAAAGCACACCTTCAACCTCTGGGTGGTTCGAGGTGGAGGTGAATGGCAAGTTGGTCCACTCAAAGAAGGAGGGGTCAGGCTTTGTGGACAACGAGCAGAAAATGGCAACATTGGTTGATGCCATTGATAAGGTGTTGGGGAAATAAGATAGTGCTGATTATGGAGTCTGATCTCTGTTTGTCATCTCCTTGACATTGCATAATGATGGTGGTGCTCCAATTGTCAAAGACATGGGTGCTGCTTGATGAAACCTGCTCTGCCAGGGAGGTGCCCTGCAGATTGCTTCAACTCCTACAGTGGCACTGCTTTTGTAAGATGGTGGGTGATAACAAAGGGAGAATATACTGTTTATTTGTCATTGAAACATAACATTTCAATTGAGCTTCTTACATTGTTCCATTATTTTAACTTTTAGGCATGGGCAAGCTTTAAAACATTTAACATTGTATGTATCTTCCCAAATGTTGATGCGACTATGAAATGCAAGTTCTTAACTTATATTTTGTTTATATGTCCACTTTGTTCTCTTAGTTTGTCTGTATTTTAAAAAGGCCTGATGTTTTGATTAAacaaggaaaggaagacacaaCACCTCGACAATAGAAATGCATATTGCAATGTCCAGTAGACTAGTGAGTGACAGTGACACCCTTGGTAGACATGCTTCAAGGAAAGTTATAGAGCTGCACTGTCTGGTTCTTGAGTGTCTTTTCTATGACAGATAAATAGGATACATTTTCATCTTAAACAGCATCTATTTAGTGTAAAAACAAGACTGTTAACCATTTTAGTGTTACATTCATTTGGGGGTTTTATACACATTTCTATAAACATTACAGTAGTTTTAATCTACATTCAAGATTGGTGTTACATGTATCTTCTCTTAAACTAGATCATGTTTAATGCATAATGAAAGTTGAAACTGATGTGATATCTGAGACAAGCATGTGAAACATGATCCCCTTGCCTGGGTATGGTAGATACCAGTAGGTTGTGCACTTGTTAGAGGAGTatactaagtgtacaaaacattaaggacaccttcctaatattgactccaatgcttcccgctGTTGTAGTAAGTTGGCTGAGTGTCATTTGGGTTTTGGGTGTGAGTGTGAAAAatttagcaacttttcagttcttgacacaaaccggtgcgcctggcacctactaccatacccatttcaaaggcacttcaatcttttgtcttccccattcaccctctgaatggcacacacacaatctgtctcATGTcttaaatttgtatttttttttacaagtctcctccccttcatctacactgatttgaaatggatttaacaagtgacatcaataagggatcatatcatTCACCTAGTTAGTCTTTGtcctggaaagagcaggtgtccttaatgttttgtacactcagtgtaccaAGATGGCACATGTCCAGACACATTCTCATTTTCACATGTCTATCCATCAACAAACTTCTGTGATATTTTATTATAAATGTGATTCTTCAAGGTCCTGTGATGTAATCTTCTATATCCAACCCCTCAATAAAAGTTAGGTTTTCATTA

Function

symbol description
selenow Predicted to enable antioxidant activity. Predicted to be involved in response to selenium ion. Predicted to be active in cytosol.

NR:

description
selenoprotein W-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008430 selenium binding molecular_function
GO:0016209 antioxidant activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591317.2 True 1838 mRNA 0.39 6 31747750 31750431

Neighbor

gene id symbol gene type direction distance location
LOC110510038 sycn coding downstream 7188 31739902 ~ 31740562 (-)
LOC110509376 LOC107567170 coding downstream 9491 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 coding downstream 16299 31726537 ~ 31731451 (-)
xrra1 xrra1 coding downstream 59038 31673347 ~ 31688712 (-)
LOC110510035 LOC106563537 coding downstream 60649 31683644 ~ 31687101 (-)
si:dkeyp-117b8.4 LOC106563408 coding upstream 6897 31757328 ~ 31761267 (-)
rsph4a LOC106563409 coding upstream 21468 31771899 ~ 31778015 (-)
sympk sympk coding upstream 27714 31778145 ~ 31789447 (-)
LOC110509423 LOC106563561 coding upstream 159639 31910070 ~ 31914335 (-)
LOC118945354 LOC106563561 coding upstream 164194 31914625 ~ 31920308 (-)
G2175491 NA non-coding downstream 36705 31710809 ~ 31711045 (-)
G2175489 NA non-coding downstream 40377 31707041 ~ 31707373 (-)
G2175418 LOC106563537 non-coding downstream 59073 31602449 ~ 31688677 (-)
G2175459 NA non-coding downstream 88061 31657109 ~ 31659689 (-)
G2175451 NA non-coding downstream 105613 31638999 ~ 31642137 (-)
G2175512 NA non-coding upstream 11599 31762030 ~ 31762658 (-)
G2175520 NA non-coding upstream 55862 31806293 ~ 31806703 (-)
G2175519 NA non-coding upstream 57033 31807464 ~ 31807891 (-)
G2175521 NA non-coding upstream 58599 31809030 ~ 31809693 (-)
G2175522 NA non-coding upstream 60666 31811097 ~ 31811336 (-)
G2175503 NA other downstream 21356 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 512852 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 534319 32282188 ~ 32287263 (-)
cpi1 cpi1 other upstream 681079 32395346 ~ 32433641 (-)
G2176363 NA other upstream 892971 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1760865 33511296 ~ 33512326 (-)

Expression


Co-expression Network