si:dkeyp-117b8.4 (LOC106563408)


Basic Information

Item Value
gene id si:dkeyp-117b8.4
gene name LOC106563408
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31757328 ~ 31761267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591318.2
AGTAATAAAAACACATGGTGGTATGGTACTTTTGTGAGACATTTTAGCAATGGTTATCTATATAATTGACCATTACTACTAACAATGGAAGGCTATAAACCACTCAAAGGAAGTTTATATGGAAGTTTTGGCTTTAAATTGGATGCGAAAGGAATCTTAACAGACAAAAGCATAGTTTACTGTTTCCATTGCGAACAGAGCTTTTCCTACCACCGCAGCAAAACAAGCTTGCAATACCATTTGCGAAAAAAACATCCTCTTGTCACTAAAGCTACACCTAGTGAAGATGTAGAGTCCGACTCGGAAATCACAGTGATCTCTGACAACTCTAACATGGATTTCCGAGGGTACCCGTTGTCCAGCAGTCTGGGACCAAATTTGAGGAGAAGGGGGGATCGGGGACCACCAGGACTGGTTCTGGATAGACGCAAGTCTACAGTTTGGAATTACTATATCCAGCTTAATGAGATGTATGTTGAGTGTAATATATGCAAGAGACAGTTGTCTTTTCACAACCGCACTACGACTATGAGGGAGCACCTTGTCCGCAAACATAATATACGTGACAATGGTCCACCTGTACTCCATAACACAGTGGTGGCCTTGGCCCCGATTCCAGCTACATCACTTCAGCCAATGGCCCAGCCCAGATTCCCCTGCAACATCTCCACTACATCTACTACTGCCAACACATTCATGTTCCAGCCAGATTTGCATGTAGTTGTAAAAGAGGAGCAGCAGGATGCTGACTTATCTCCTGAACAAGGGACGGCCAAACGTTCACGAATCACATGTGCTCCCCCAGATGTAGGAGGCGGTGCCAATGCCAACCCTGTCTGCAGCCGAGATTTGGAACCGTCAAATTCAAATACTGGATTACTATACAGTGAGAACAACCACTTTGGTGATAGCAGTCGCAGTGGCACTTGTATCAAGGAATCCAATGATAAGCGAACTGGGTTCCTGACTGACCTAATATTAGAAGTGGTGTACAGGGacttgcagccactgtctgtggtggaggagaggggatttCGTCTTCTATTGAGCTGCTTAGAACCACAGTACCCAGTGCCATCTCCCTCTCAGCTCGGCAGCATTATTTGGCATCGCTATGATGTGCTTAAACTGCAACTGCAGCAGTGTCTTCAGTCTGGCCTGGCACCACGTGGCATATCACTTTGCACTGAATACTGGAGGTCAGCAGCAGGTTGTGAGGTGGGAGCAAGCGGCCGGGTGTTCTTAACTGTAAGTGCACATTTTATTGACAAAGACTGGCGCTTGGCCCGTTGTGTGCTGCAGACCCGTCCCATGACCGTTATCAGAGAGAGGGCTTGTGGAAGTGGGTTCACTCAATTTGGTGACACCCTAAAGGCAGTTCTCTCTGACTTCCATCTCCCCCAGAGCTCTGTTTTCTGTGTTGTGCACAATACTCCCAAGACCTCAAAGGCCAGAGGGACTGCGAATATGGGACTTCAGAAAGAAAATCAAATTGCTGGACCAGGCCAATCACCTCAGGATCTACCAGAGAGCTGGGTAGCATTACACTGTGCAGGGGAAGCCCTCAAGCTCTGCATCCAGGAAGGACTATGGATGGAACCTGTCAGACAGGCTCTTTCTGAGGCCCGCAGGATTATTTCACATTTCCAGCATGACACACCTGCTGCTGCCGCTCTGATCCACAAAGCAGAAGCTGCTAATAAAGCCGGTGCTTGTCTGGCGCTGGATGACCCAGGGCACTGGGCAACTACTATCGACATGTGTGAAAGTCTGCTAGGGCTGAAATGGGTGGTGAGCTCCGTTCTAGAGGAGCAGAAAGCTGCTCCAAACTTAGTGGACCACCAGTGGCGTCTTCTCCAGGAGCTGGTGCCAGTTCTTAAGACCATGCGCATCGCTGCCTCCTTTTTGAGTGAGGACATAAATGTGTCCATCTCCGCCCTTATGCCGTGCCTGCATGGTGTATTCCGTGTCCTAAGGCAACACATCGCAGAGAGTAGCTGCCCTGTGGCTCGAGGAGTCATGGAGACCGTGCAGTCAGGAATGGAGCGACAGTGGAGACTGGGTGAAGAGGAGGCCTTACTGGACAGCCCTGCCGTCCTCTCCTCATTCCTGGACCCGAGGTTTAAGGAGCTGCGCTTCCTCAGCCCACATGCACGTAGTAAGCTGCACGACAAGGTTAAAGAACTGTTATCTGCTCAAGTGCAAATGAAGGCAGAGGAAATAAGCAGAGAGCGTGATAAAGGCGGTGATGATGAGAAGGGCGaagagggaagggaaaggggagtGACTAATATGAGATTGATGAACTCTCAGTCAACAATCGTTCATCTGCAGCCCCCTTCTTATAATCAAGTGAGCCCGGTGGCCAAAACCATGTACGACATACTGCTAGGAGAGGATCCCACTGAGCGAATGCCTGAGATCCACCAACAGCTGGAGAACTACATTGCAGAGCCTTTGTGCAAACGTAGCCTGTCACCTCTCCACTGGTGGCACTCTAAGGAGCATCGCTTCCCTGCCGTGGCCAGACTTGCCCGTACATTTCTGGCTATTCCTACTACGGCTGTGGCTGCAGACAGAGCTTTTGCTCCTAGAGAGACTACTGTTGCTCAACGCAGGGCCATTCTGGGGCCCCAGCATTTGGATCATATTCTTTTCCTTCACCAGAACAGTGACTATGTGGAGAAACTGATGGGAGGGTCTACGGTGCATGGAGAACGGGGCAGTGACAAGAATGGAGCCAAGAAGACAAGAGAGACTCTGTATCAGTCTTTAGTGTCCTATGAGAGCAAGACttgggtgggaggggaggagttGTGAGCTTGTAGTCAGTATCATAGTAAGAACAGAGTTGTGGATATGCACACTCAACATAGGCCTGAGAGAAAATATCCATCCAATCCTGCTTAAGATTTAGCTGATTTCAACTCATCTAGGTAAAAAGTTGAAAAATCAATGACAAGGCAAACAAATAATGCAGCTTTTGGGCTCAAAGCCACACTTGTCTGTTTTTACATGTAAAAAAAGTGTCTGGCCTACTAGCGTCTGGCCCACATATCTACATGTGAGCTGTGAATTTTCATCATAAGTCGTCGTAAAGTGCTTTCAATGTGTACCATACCAAATAATATGTATCCTATATGTAAAGTTGTGAGGAGTTGTTGCACTTTGTCCTTGGTTTGCATGAAGTAAAAACACAGGTTCAGCAGCGAAGCTTGTACAATAATTGCAGCATGATGTTCATTTAGAAGTAAGAAATGTCTCGAACACTATCCGTAAAGAACTGTTGCATTAAAGGAATGGTTCAAGAACATTCAAACAATTTTCAAACAA

Function

NR:

description
zinc finger BED domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591318.2 True 3333 mRNA 0.48 2 31757328 31761267

Neighbor

gene id symbol gene type direction distance location
ehd2a LOC106563411 coding downstream 1529 31747750 ~ 31755799 (-)
selenow1 selenow coding downstream 6897 31747750 ~ 31750431 (-)
LOC110510038 sycn coding downstream 16766 31739902 ~ 31740562 (-)
LOC110509376 LOC107567170 coding downstream 19069 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 coding downstream 25877 31726537 ~ 31731451 (-)
rsph4a LOC106563409 coding upstream 10632 31771899 ~ 31778015 (-)
sympk sympk coding upstream 16878 31778145 ~ 31789447 (-)
LOC110509423 LOC106563561 coding upstream 148803 31910070 ~ 31914335 (-)
LOC118945354 LOC106563561 coding upstream 153358 31914625 ~ 31920308 (-)
LOC118945355 LOC106563561 coding upstream 159153 31920420 ~ 31929067 (-)
G2175476 selenow non-coding downstream 6913 31747773 ~ 31750415 (-)
G2175491 NA non-coding downstream 46283 31710809 ~ 31711045 (-)
G2175489 NA non-coding downstream 49955 31707041 ~ 31707373 (-)
G2175418 LOC106563537 non-coding downstream 68651 31602449 ~ 31688677 (-)
G2175459 NA non-coding downstream 97639 31657109 ~ 31659689 (-)
G2175512 NA non-coding upstream 763 31762030 ~ 31762658 (-)
G2175520 NA non-coding upstream 45026 31806293 ~ 31806703 (-)
G2175519 NA non-coding upstream 46197 31807464 ~ 31807891 (-)
G2175521 NA non-coding upstream 47763 31809030 ~ 31809693 (-)
G2175522 NA non-coding upstream 49830 31811097 ~ 31811336 (-)
G2175503 NA other downstream 30934 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 502016 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 523483 32282188 ~ 32287263 (-)
cpi1 cpi1 other upstream 670243 32395346 ~ 32433641 (-)
G2176363 NA other upstream 882135 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1750029 33511296 ~ 33512326 (-)

Expression


Co-expression Network