rsph4a (LOC106563409)


Basic Information

Item Value
gene id rsph4a
gene name LOC106563409
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31771899 ~ 31778015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591319.2
CAGCAAGATCCTGCATGTCATTACATTTTTAAAGACTGTTAGGAGTGGAGGATATGCTGCGACTGGTGGACATTCTATGCGTGAAGTACCACAGCAACAGTATTGTTTACCCTAGAAACAGGCCGCTGGTAACGTGGACTTTCTGAAATATGGAGTCAGAGGGAGCACCACTGAACAATCAAAGGGAGCAGACATCGATCTGCTTCAAGGCATTTATGCTAAAAAATAGTACACAAAGTAACCTCAACCTCTATGACCATTTtgcacgggtactgaccaaggTGATGGATGAGCGCCCAGAAAATGTGGTTGACGTAATTGAAGACATGAGCCATGAGGTGAAGCGGGGATTGCTGCTGGACAAGCAGAGCACATTGAGAGACATACCTCCGTCGCCTGCTGCACAGCTCCTGGCTGAGCAGCAGATGTTGCTGTTTTCACGGGGAGGGGGTGATGATGGTGACCAAGAGGTAGAAACACCGCTCCCCAATGTGAGTGAAGTTGGCTTCTTACTGGAGCAGGCTGGAGTGGGACTGGGCAGAGAGGAGACGCTGAGGGTTTTCCTGGCACTCAAGCAGTTGGTAAATTCCCAACCACTAGCACGCTGCCGACTCTGGGGTAAAATCCTGGGCACTGAGGGCAACTATCTTGTTGCTGAGGGtgagtacagagatgaggaggAAGGGATTAATGAGGAAACAGCGGAAGACGCAGAAGGAGAACCTCGGAATGATGATGAGGAAGCTGAGGTGGTGGAAGTAATTGATACACTCCCAAGATCCACTTTCAAGCCGCCACCTGTGGTGCCAAAGGAGTACAACCGCACAGGTGTGAACAAATTCACTTACTTTGTGTGCAGAGAGTCTGGCCTTCGCTGGATGAGGCTGCCCACTGTCACTCCTACCCAGATTACAGCTGCGCGCCACATCCGCAAATTCTTCACAGGGAGACTGGATGCCCCCATTGTCAGCTATCCTCCTTTCCCTGGCAATGAGGCTAACTATTTGCGAGCCCAAATTGCTCGCATCTCTGCCGGcacacaggtcagtcccctcggGTTCTACCAGTTtgaagaggaggaaggtgaggaggaagaggagggagccCGGGACAGCTTTGAAGAGAATCCTGACTTTGAGGGTATTCCTGTTCCTGAAATGGCAGAATCTCTATCCACCTGGGTGCACCATGTCCAGCACATTCTCCAACAGGGTCGCTGTGTGTGGGTGAACCTGGCTGAGAAGCCTGAGGATGACTTTGAGGAGGAAGCAGATGAAGAGGTGAAGGAGGAGGCTGATGAGCCTGAGCCAGAGGTGGGCCCACCCCTCCTCACACCACTCTCTGAGGATGCAGAGattaccaccacccctccctggAGCTCCAAGATGTCCTCCACCCTCATCTCTCAGTTTGCTATTGCAGTGCTACGCTCCAACCTCTGGCCAGGGGCTTATGCTTATGCCAGTGGAAAGAAGTTTGAGAACATATACCTTGGCTGGGGCTTAAAATTTGCAGGGGAAGCCTACACCCCAACTTTTCCAACAATGCCCCAGCGAGAATACACCAGCGGGCCAGAGATTACAGAGGCCCTGGACCCCAGTCTGGAGGAAGAGCAGGCCCTGAAAGCAGCCATGGAGGAGCAGAAGGCTAACCAAGATGAGACAGAGGGCCTGGgtggagatgaagaggaggatgatgattGAGGAAGACTTTGTAGGAAACAGACACTACATTACAAAATTGAATGTTGACTAAAGCCATAATTTGTCAAGAAAGCACAAATTAAACAATTCGCAGAGCAA

Function

NR:

description
radial spoke head protein 6 homolog A-like

GO: NA

KEGG:

id description
K19756 RSPH4_6; radial spoke head protein 4/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591319.2 True 1802 mRNA 0.51 8 31771899 31778015

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-117b8.4 LOC106563408 coding downstream 10632 31757328 ~ 31761267 (-)
ehd2a LOC106563411 coding downstream 16100 31747750 ~ 31755799 (-)
selenow1 selenow coding downstream 21468 31747750 ~ 31750431 (-)
LOC110510038 sycn coding downstream 31337 31739902 ~ 31740562 (-)
LOC110509376 LOC107567170 coding downstream 33640 31736713 ~ 31738259 (-)
sympk sympk coding upstream 130 31778145 ~ 31789447 (-)
LOC110509423 LOC106563561 coding upstream 132055 31910070 ~ 31914335 (-)
LOC118945354 LOC106563561 coding upstream 136610 31914625 ~ 31920308 (-)
LOC118945355 LOC106563561 coding upstream 142405 31920420 ~ 31929067 (-)
LOC100135879 cbr1 coding upstream 164727 31942742 ~ 31947694 (-)
G2175512 NA non-coding downstream 9241 31762030 ~ 31762658 (-)
G2175476 selenow non-coding downstream 21484 31747773 ~ 31750415 (-)
G2175491 NA non-coding downstream 60854 31710809 ~ 31711045 (-)
G2175489 NA non-coding downstream 64526 31707041 ~ 31707373 (-)
G2175418 LOC106563537 non-coding downstream 83222 31602449 ~ 31688677 (-)
G2175520 NA non-coding upstream 28278 31806293 ~ 31806703 (-)
G2175519 NA non-coding upstream 29449 31807464 ~ 31807891 (-)
G2175521 NA non-coding upstream 31015 31809030 ~ 31809693 (-)
G2175522 NA non-coding upstream 33082 31811097 ~ 31811336 (-)
G2175524 NA non-coding upstream 35547 31813562 ~ 31813776 (-)
LOC110510037 LOC106563414 other downstream 42605 31726537 ~ 31731451 (-)
G2175503 NA other downstream 45505 31721952 ~ 31726394 (-)
G2175969 LOC100194703 other upstream 485268 32263283 ~ 32266089 (-)
LOC110510065 LOC106603070 other upstream 506735 32282188 ~ 32287263 (-)
cpi1 cpi1 other upstream 653495 32395346 ~ 32433641 (-)
G2176363 NA other upstream 865387 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1733281 33511296 ~ 33512326 (-)

Expression


Co-expression Network