LOC110510069 (LOC106563585)


Basic Information

Item Value
gene id LOC110510069
gene name LOC106563585
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32343047 ~ 32346238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591383.2
TGCTGCTTCACGGTGCAAGCGGAAGTGGTTTCCCCGAGAAAGCTAAGCTAACAAGCTTGCTAACTTTAAGTGTGTGACATCGTCACGGATTGGTATTTCATTCCATTTTTATAACACACAATTCGATACGGACAAAACAGGACTGATTTAACAAAGCCTGTTAGTTTGGGAATATGCCGAAGAATAAAGGTAAGGGAGGAAAGAATCGACGACGTGGTAAAAATGAGAATGAATCAGAAAAGAGAGAGCTGGTTTTCAAAGAGGATGGCCAAGAATATGCACAGGTCATTAAGATGTTGGGTAATGGACGACTGGAAGCTATGTGTTTTGATGGAGTCAAGCGACTTTGCCACATCCGAGGAAAACTACGGAAAAAGGTTTGGATCAACAGTTCAGACATCATCCTGGTGGGACTTCGAGATTACCAGGACCAAAAAGCTGATGTTATCCTGAAGTACAATGCAGACGAGGCCAGGAGTTTGAAGGCCTATGGGGAGCTTCCTGAACATGCTAAAATCAATGAGACCGACACGTTTGGACCTGGTGACGACGAGGACATTCAGTTTGATGACATTGGAGATGATGACGAGGACATTGATGATatctgaatcaggactaTTGTGTGCCACATCATTTACGCAGAGGAAAGTGGACATTTCTATAATCCTCAAGTCAGTTGAGACTGCTTAAGACCTGGAATCTGTCAACTGAGAACATCATCACACCTACTTCAGTTCACACTTCATATTTTTGTTATAGGtgtaatatatttatattttattccaTCTCATGCGGAATATAGGCTCAAATTACAGAACACcagaatttaaaataaaaaaaactgaaataaatgttTGGTCTGAAGATTTGTTGTCTAAAACAAAGTATCCTACCCTTTTTTAGAACATACTTTTGTTTTCTTGATATTGATGATCAATAAAGTAATTATTTTAAAA

Function

NR:

description
Eukaryotic translation initiation factor 1A, X-chromosomal

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005829 cytosol cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03236 EIF1A; translation initiation factor 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591383.2 True 956 mRNA 0.39 7 32343047 32346238

Neighbor

gene id symbol gene type direction distance location
LOC110510067 NA coding downstream 866 32318517 ~ 32342181 (-)
si:ch211-114c12.2 LOC106563582 coding downstream 46621 32287422 ~ 32296426 (-)
LOC110510065 LOC106603070 coding downstream 55784 32282188 ~ 32287263 (-)
poglut3 kdelc2 coding downstream 90336 32246223 ~ 32252711 (-)
LOC110510060 LOC106563578 coding downstream 105465 32230853 ~ 32237582 (-)
LOC110510068 LOC106563584 coding upstream 119 32346357 ~ 32368661 (-)
LOC110510070 LOC106603064 coding upstream 22688 32368926 ~ 32378207 (-)
LOC110510074 LOC106563592 coding upstream 76758 32422996 ~ 32425938 (-)
cpi1 cpi1 coding upstream 85972 32395346 ~ 32433641 (-)
LOC110510075 LOC106563635 coding upstream 105109 32451347 ~ 32460638 (-)
G2175988 NA non-coding downstream 31395 32311436 ~ 32311652 (-)
G2175982 NA non-coding downstream 80499 32261785 ~ 32262548 (-)
G2175946 NA non-coding downstream 144388 32198242 ~ 32198659 (-)
G2175945 NA non-coding downstream 145354 32197202 ~ 32197693 (-)
G2176010 NA non-coding upstream 32997 32379235 ~ 32379452 (-)
G2175993 NA non-coding upstream 34154 32380392 ~ 32390112 (-)
G2175995 NA non-coding upstream 44636 32390874 ~ 32391955 (-)
G2175979 NA non-coding upstream 45954 32392192 ~ 32392688 (-)
G2175969 LOC100194703 other downstream 76958 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 604812 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 other downstream 613753 31726537 ~ 31731451 (-)
G2175503 NA other downstream 616653 31721952 ~ 31726394 (-)
G2176363 NA other upstream 297164 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1165058 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1775244 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1992673 34338911 ~ 34342460 (-)

Expression


Co-expression Network