LOC110510068 (LOC106563584)


Basic Information

Item Value
gene id LOC110510068
gene name LOC106563584
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32346357 ~ 32368661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591379.2
GTAGACCGAACCACGGCGCCATATTGAGAGAGAACGGAAGTGAGTGATTTTTGATGTGGAAAAAGTGTTTATGAAGTTCCTAGAAAACATTGGCAAGAGTGATGAAACCCGTTTAAACGCACAGTTAGAGTTGAACTGGAACCATTTTACTATTTTGGTTTTCTCGTTtaagagaacccccccccccctcaagaaATACTTTTCCGAATCCCACCCTTGACAGTGTTAAGTCACTGAAAGCGCGCGGCAGCGACTGAACTCTTGTCGAAGATGCCCTTGGCACAGTTTGGAGCAGACCCATGGCAGAAAATGGCCTTGGAGAATTCGGAAAACGAGGTCATGGATGACTCAATGGGGGAGGATGAAACTGTATGTAGTGATGAGGGCTCCGTGAATGAGATCAGTATCACAAACCATGTTAAAGAGGGCTCTGAAAGGGCTGATCCTAGGCAGTTTGAGCTCCGCAAGGTACTGGGACAGGGATCCTTTGGGAAGGTGTTCCTTGTGAAGAAAATAACAGGGCCTGATGCTGGACAGCTGTATGCTATGAAGGTGCTGAAAAAGGCCACTTTGAAAGTGCGAGATAGGGTCCGTACCAAGATGGAGCGAGACATTCTGGTAGAGGTGAACCATCCTTTCATAGTCAGACTACACTACGCATTCCAGACAGAAGGGAAGCTGTACCTGATTCTGGACTTCCTCCGAGGTGGAGATCTATTCACACGGCTGTCTAAAGAGGTGATGTTCACAGAGGAAGATGTGAAGTTCTACCTGGCAGAGCTGGCTCTGGCCCTGGACCATCTGCATGGCCTGGGAATCATCTACAGAGACCTTAAACCTGAGAACATTCTGTTAGATGAGGAGGGCCATATCAAACTCACTGACTTCGGCCTTAGTAAAGAGTCCATTGATCATGAGAACAAGGCCTACTCTTTCTGTGGAACAGTGGAGTACATGGCACCAGAGGTTGTGAACCGCCGAGGACACACCCTTAGCGCTGACTGGTGGTCCTATGGCGTGCTCATGTTTGAGATGCTGACTGGGACACTGCCTTTCCAAGGGAAGGACCGGAAGGAAACCATGACCATGATACTGAAGGCCAAGTTGGGAATGCCACAGTTCCTGAGCCAAGACGCCCAATCTCTCCTACGTAACCTTTTCAAACGCAACCCAGGCAACAGACTAGGTGCTGGTCCAGACGGAGTGGAAGAGATCAAGAGACATTCCTTATTTTCCACAATTGACTGGAACAAATTATTCAGGAGAGAACTCCATCCCCCCTTCAAACCTGCGAGTGGCAGACCTGATGACACCATCTACTTTGACTCTGAATTCACTGCAAAAACTCCACGGGACTCTCCCGGCTGTCCCCCGAGTGCCAACACCAACCAGCTGTTTAGAGGCTTCAGCTTCGTGGCTATCTCAGATGAGGAGAGTCAACCTCCACAGAACATTAACATCAACATGTCCTCTATACAGCAACTCCACAGAAACACAGCACAGTTTAGTGATGCCTACGATGTGAAGGAGGACATTGGTGTGGGCTCTTACTCCATATGCAAACGCTGTGTTCAGAAGAGCAACAGTATGGATTATGCTGTAAAGATCATCAGTAAGGCCAAGAGGGACACAACAGAAGAGGTGGAGATTCTTCTGCGCTATGGACAGCACCCCAACATCATCACTCTCAAAGATGTGTTTGACGATGGGCGCTCAGTGTACCTGGTGACAGAGCTCATGAAAGGAGGAGAGCTGCTGGATAAGATCCTCAGACAGAAGTTCTTCTCTGAGAGGGAGGCCAGTGCAGTTCTCCACACCATCACCAAAACTGTGGAGTACCTGCATGCACAGGGGGTTGTCCATAGAGATCTGAAGCCCAGTAACATACTGTACGTGGATGAGTCTGGAAACCCAGAGTCCATCCGAATCTGTGACTTTGGCTTCGCCAAACAGCTGAGAGCTGAAAATGGACTCCTGATGACTCCCTGCTACACGGCCAACTTTGTCGCCCCCGAGGTCCTGAAGAAACAGGGCTATGATGCAGCCTGTGATATCTGGAGTCTAGGAGTGCTGCTCTATACAATGCTTACTGGGTTCACTCCTTTTGCCAATGGACCAGAGGATACTCCCGAAGAGATCTTGGCTCGGATCGGCAGTGGAAAGTTCTCTCTGACGGGTGGCTACTGGAATTCAGTCTCCGCAGAGGCCAAGGACCTAGTGTCCAAGATGCTGCATGTGGACCCCCACCAGAGGCTAACTGCTGCTCAGGTACTGCGACACCCTTGGATATTACACAAGGACCAGTTGCCCAAGTACCAGCTCAATAGACAGGATGCTCCTCATTTGGTCAAGGGTGCGATGGCAGCCACTTATTCTGCTCTGAACATGCATGTTCCCCCTGTGCTGGACCCTGTAGGGCGCTCCTCGTTAGCTCAAAGAAGAGGAGTGAAGAAGTTGACCTCCACAGCCCTGTGATCCACTAGTATCAATCTCACCTGTTTAATGCTACTGCACCAGTGCATTAGTGTGTTTCGACTCCCGCTGTGTTAGAAGAACAGTGTGTAAGACCAAAAAGAAACGGTAACCCATTCACTGAGAAAATGCATCATGTATTTGCTTGTACAATCATCACTGCCTTCAGACCAAGAGTTACAAACTCTTGGAAAGGCTGAACTGTATATTTTATGAAAATGAGATATTTACTACAAAAATAGAATTAAATGTATACGGGTTCCTACAGGTCTGTGTTTAAACAGAGATTGTGTTAAGCACTGGGGGATGAAGGGGTTTGGAAAGGGTTAAAATGATGTTTCCCCCAGTTGCATGGAGCAGTCAGTCCCCCTTATTCCAAATCAACCGCTAAGCCCCTACCCCCTACCTATGCACTTGTATAGATCTGAAAATATTAGATACGTGTAAACAGTCATATTTTTAGTTAGGCCAATTTTTTAGAATGTTATATTGTTCTAATTCCAGACATTTGGTTACATAGCATTGTTTAAATATTCCCCATGTCATGTTAAATGGGGAgctaaccatagaaatagaatgaatggaACTGACTTGGtgctctaaccctggcaatttgactggttaACGAACTCACCGTATAGCCCCACAGTGAAGGTGTCATAACACTCCTAAAACCTAGCAGttaaacagggaaatggttccaattgtttttccaccattcatttttcccatatgATACTTAATAAGGGCTATTTTTGGTGTAGGTTTACCCTGGCGTGTCATTTTGATGACCATGTAAATCTCTGACAAGTTGACTAACCGATATATTTGTCTCCATTTACTCTGCTTCAAAAATGCTAATTAGTGTCCAAGTAGACATCACGCAAGATTACAAATACCTGCAAGCTCATGCACgtgctgacacctttgctaacagttATTGTGTCAAGACAGTTCACATAATTGTCAATTTAAATACATAATTGTcattttgggagggggggggggggggtaaatacaggcaaatatatttataagtcaccttgtcctagagagatttacaccgTTATCAaaagcccttattttaagtgtttctaaaatcccctatgggaaaaatgaatggagccatttccttgtttgaccccTAGGTTTTATTTGGAATATTCTATCAATAGATTCTGGattgccatggtaatgtagaatgttaatTCAAATTATGCTAGCTCAGGGGTGTCAAACCTTTTGCATGGAGGGACTTGTCTGTTGGTTTTTCGTTTCAATCAATCCCTAGACAACCAAGTGTGggggggagttccttactaatttgtgatcttaattcatcaatcaggtacaagggaggagcaaaaacacgcagacactcagccctccgtggaatgatttTGACACTCGTGTGCTAGCTGATGTGGCTCATGAATGTATTTTTTGTGATGTCAGTTGAGTTGACTTAACAGATTGAAGTTTATACTTCTTGCTTTTACTTCCTGCCATTGGTCTAGGGAAAAAATATACAGGTTAAGACAACGTCGTCACAAATCTGGGATCATTGGTGTTCGTTAACTACCAGCGCCATTGCTAACCAGCACAGCTTGTCCTATTCTTGCAAAGAGTTATGGGCTATTAGAATCTTGTTTTCTTAACCTTTGTCATATTCAACCTAGTCATAGGTACACTCAATGGATGCCAGTCCAGCCATTATGCTACCGTTGACTTTAATGGGGAtgcctgttctattcattctatttctatggaactATTATGGCTGCCATGGAATGTTTTAGTGTCATGTTTTTGCATCATTGCCCAATTCAGACATTCAGTTTTATAcaattttctattttatttttatattccCCATGTAGCTATTGTTAATAgtgagctaacatggctgccatagaatgttgaagTGTCAATATAAAATGCATCATGATGCGGAAACCGCATTGACTCAACTTTCTAAATACAAGGCTCTGGGAATAAGCAACATGGAATTATTACTATATTGCTTATTTATTGGGCAATTAGGGTTTGGACACTGACAAACTCCTTAATAGTGCAACAGTTTACCAAGGCCCTGTCAGCAATGGGGGAGAAAAAGTGCTAACCTCCTTCCTCACTCCAGTATCTGCTGCTGCACTTTCTCTCAGACCTTTGTGTTGGGGCAGGGCCCAGAGGGGTTGGAGTTTTCTTGCTTTACTTAGTCTTTAATTTTTTTTGTCCTTCTCATAATCATAAAGGGAAACGTGAACTTGGGATATACTTATAGCAATTAATATTACTTTTCCAGTCTACTTTTAAGAGACCATTAAGAATGTATTTTTGTATATGTTGATGAATGAAACATTTTCTACTTGGTGTGCATGATGGTCACAGGACAGCTTTAGTTTGGGGGGCGGGGGGTTTAAGGGAAGGGCTTTCCAAGAAGATGCTGGGGAAATGTAACATGCTAGATGGAGGGGTGAATAGATAGCGTCTTTCCCCTCTGGTTTCCATGTTTTACAGAGAAATGTTTCTCAGTAGATGTGGGCCAGGCAAGTGACTGCAGCTTCATTTGTAACCTAAAAAATGATCATGAATACATCAAATAAATATACAATCAAATAATG
>XM_021591378.2
GGTAGACCGAACCACGGCGCCATATTGAGAGAGAACGGAAGTGAGTGATTTTTGATGTGGAAAAAGTGTTTATGAAGTTCCTAGAAAACATTGGCAAGAGTGATGAAACCCGTTTAAACGCACAGTTAGAGTTGAACTGGAACCATTTTACTATTTTGGTTTTCTCGTTtaagagaacccccccccccctcaagaaATACTTTTCCGAATCCCACCCTTGACAGTGTTAAGTCACTGAAAGCGCGCGGCAGCGACTGAACTCTTGTCGAAGATGCCCTTGGCACAGTTTGGAGCAGACCCATGGCAGAAAATGGCCTTGGAGAATTCGGAAAACGAGGTCATGGATGACTCAATGGGGGAGGATGAAACTGTATGTAGTGATGAGGGCTCCGTGAATGAGATCAGTATCACAAACCATGTTAAAGAGGGCTCTGAAAGGGCTGATCCTAGGCAGTTTGAGCTCCGCAAGGTACTGGGACAGGGATCCTTTGGGAAGGTGTTCCTTGTGAAGAAAATAACAGGGCCTGATGCTGGACAGCTGTATGCTATGAAGGTGCTGAAAAAGGCCACTTTGAAAGTGCGAGATAGGGTCCGTACCAAGATGGAGCGAGACATTCTGGTAGAGGTGAACCATCCTTTCATAGTCAGACTACACTACGCATTCCAGACAGAAGGGAAGCTGTACCTGATTCTGGACTTCCTCCGAGGTGGAGATCTATTCACACGGCTGTCTAAAGAGTCTGTCTACCAGGTGATGTTCACAGAGGAAGATGTGAAGTTCTACCTGGCAGAGCTGGCTCTGGCCCTGGACCATCTGCATGGCCTGGGAATCATCTACAGAGACCTTAAACCTGAGAACATTCTGTTAGATGAGGAGGGCCATATCAAACTCACTGACTTCGGCCTTAGTAAAGAGTCCATTGATCATGAGAACAAGGCCTACTCTTTCTGTGGAACAGTGGAGTACATGGCACCAGAGGTTGTGAACCGCCGAGGACACACCCTTAGCGCTGACTGGTGGTCCTATGGCGTGCTCATGTTTGAGATGCTGACTGGGACACTGCCTTTCCAAGGGAAGGACCGGAAGGAAACCATGACCATGATACTGAAGGCCAAGTTGGGAATGCCACAGTTCCTGAGCCAAGACGCCCAATCTCTCCTACGTAACCTTTTCAAACGCAACCCAGGCAACAGACTAGGTGCTGGTCCAGACGGAGTGGAAGAGATCAAGAGACATTCCTTATTTTCCACAATTGACTGGAACAAATTATTCAGGAGAGAACTCCATCCCCCCTTCAAACCTGCGAGTGGCAGACCTGATGACACCATCTACTTTGACTCTGAATTCACTGCAAAAACTCCACGGGACTCTCCCGGCTGTCCCCCGAGTGCCAACACCAACCAGCTGTTTAGAGGCTTCAGCTTCGTGGCTATCTCAGATGAGGAGAGTCAACCTCCACAGAACATTAACATCAACATGTCCTCTATACAGCAACTCCACAGAAACACAGCACAGTTTAGTGATGCCTACGATGTGAAGGAGGACATTGGTGTGGGCTCTTACTCCATATGCAAACGCTGTGTTCAGAAGAGCAACAGTATGGATTATGCTGTAAAGATCATCAGTAAGGCCAAGAGGGACACAACAGAAGAGGTGGAGATTCTTCTGCGCTATGGACAGCACCCCAACATCATCACTCTCAAAGATGTGTTTGACGATGGGCGCTCAGTGTACCTGGTGACAGAGCTCATGAAAGGAGGAGAGCTGCTGGATAAGATCCTCAGACAGAAGTTCTTCTCTGAGAGGGAGGCCAGTGCAGTTCTCCACACCATCACCAAAACTGTGGAGTACCTGCATGCACAGGGGGTTGTCCATAGAGATCTGAAGCCCAGTAACATACTGTACGTGGATGAGTCTGGAAACCCAGAGTCCATCCGAATCTGTGACTTTGGCTTCGCCAAACAGCTGAGAGCTGAAAATGGACTCCTGATGACTCCCTGCTACACGGCCAACTTTGTCGCCCCCGAGGTCCTGAAGAAACAGGGCTATGATGCAGCCTGTGATATCTGGAGTCTAGGAGTGCTGCTCTATACAATGCTTACTGGGTTCACTCCTTTTGCCAATGGACCAGAGGATACTCCCGAAGAGATCTTGGCTCGGATCGGCAGTGGAAAGTTCTCTCTGACGGGTGGCTACTGGAATTCAGTCTCCGCAGAGGCCAAGGACCTAGTGTCCAAGATGCTGCATGTGGACCCCCACCAGAGGCTAACTGCTGCTCAGGTACTGCGACACCCTTGGATATTACACAAGGACCAGTTGCCCAAGTACCAGCTCAATAGACAGGATGCTCCTCATTTGGTCAAGGGTGCGATGGCAGCCACTTATTCTGCTCTGAACATGCATGTTCCCCCTGTGCTGGACCCTGTAGGGCGCTCCTCGTTAGCTCAAAGAAGAGGAGTGAAGAAGTTGACCTCCACAGCCCTGTGATCCACTAGTATCAATCTCACCTGTTTAATGCTACTGCACCAGTGCATTAGTGTGTTTCGACTCCCGCTGTGTTAGAAGAACAGTGTGTAAGACCAAAAAGAAACGGTAACCCATTCACTGAGAAAATGCATCATGTATTTGCTTGTACAATCATCACTGCCTTCAGACCAAGAGTTACAAACTCTTGGAAAGGCTGAACTGTATATTTTATGAAAATGAGATATTTACTACAAAAATAGAATTAAATGTATACGGGTTCCTACAGGTCTGTGTTTAAACAGAGATTGTGTTAAGCACTGGGGGATGAAGGGGTTTGGAAAGGGTTAAAATGATGTTTCCCCCAGTTGCATGGAGCAGTCAGTCCCCCTTATTCCAAATCAACCGCTAAGCCCCTACCCCCTACCTATGCACTTGTATAGATCTGAAAATATTAGATACGTGTAAACAGTCATATTTTTAGTTAGGCCAATTTTTTAGAATGTTATATTGTTCTAATTCCAGACATTTGGTTACATAGCATTGTTTAAATATTCCCCATGTCATGTTAAATGGGGAgctaaccatagaaatagaatgaatggaACTGACTTGGtgctctaaccctggcaatttgactggttaACGAACTCACCGTATAGCCCCACAGTGAAGGTGTCATAACACTCCTAAAACCTAGCAGttaaacagggaaatggttccaattgtttttccaccattcatttttcccatatgATACTTAATAAGGGCTATTTTTGGTGTAGGTTTACCCTGGCGTGTCATTTTGATGACCATGTAAATCTCTGACAAGTTGACTAACCGATATATTTGTCTCCATTTACTCTGCTTCAAAAATGCTAATTAGTGTCCAAGTAGACATCACGCAAGATTACAAATACCTGCAAGCTCATGCACgtgctgacacctttgctaacagttATTGTGTCAAGACAGTTCACATAATTGTCAATTTAAATACATAATTGTcattttgggagggggggggggggggtaaatacaggcaaatatatttataagtcaccttgtcctagagagatttacaccgTTATCAaaagcccttattttaagtgtttctaaaatcccctatgggaaaaatgaatggagccatttccttgtttgaccccTAGGTTTTATTTGGAATATTCTATCAATAGATTCTGGattgccatggtaatgtagaatgttaatTCAAATTATGCTAGCTCAGGGGTGTCAAACCTTTTGCATGGAGGGACTTGTCTGTTGGTTTTTCGTTTCAATCAATCCCTAGACAACCAAGTGTGggggggagttccttactaatttgtgatcttaattcatcaatcaggtacaagggaggagcaaaaacacgcagacactcagccctccgtggaatgatttTGACACTCGTGTGCTAGCTGATGTGGCTCATGAATGTATTTTTTGTGATGTCAGTTGAGTTGACTTAACAGATTGAAGTTTATACTTCTTGCTTTTACTTCCTGCCATTGGTCTAGGGAAAAAATATACAGGTTAAGACAACGTCGTCACAAATCTGGGATCATTGGTGTTCGTTAACTACCAGCGCCATTGCTAACCAGCACAGCTTGTCCTATTCTTGCAAAGAGTTATGGGCTATTAGAATCTTGTTTTCTTAACCTTTGTCATATTCAACCTAGTCATAGGTACACTCAATGGATGCCAGTCCAGCCATTATGCTACCGTTGACTTTAATGGGGAtgcctgttctattcattctatttctatggaactATTATGGCTGCCATGGAATGTTTTAGTGTCATGTTTTTGCATCATTGCCCAATTCAGACATTCAGTTTTATAcaattttctattttatttttatattccCCATGTAGCTATTGTTAATAgtgagctaacatggctgccatagaatgttgaagTGTCAATATAAAATGCATCATGATGCGGAAACCGCATTGACTCAACTTTCTAAATACAAGGCTCTGGGAATAAGCAACATGGAATTATTACTATATTGCTTATTTATTGGGCAATTAGGGTTTGGACACTGACAAACTCCTTAATAGTGCAACAGTTTACCAAGGCCCTGTCAGCAATGGGGGAGAAAAAGTGCTAACCTCCTTCCTCACTCCAGTATCTGCTGCTGCACTTTCTCTCAGACCTTTGTGTTGGGGCAGGGCCCAGAGGGGTTGGAGTTTTCTTGCTTTACTTAGTCTTTAATTTTTTTTGTCCTTCTCATAATCATAAAGGGAAACGTGAACTTGGGATATACTTATAGCAATTAATATTACTTTTCCAGTCTACTTTTAAGAGACCATTAAGAATGTATTTTTGTATATGTTGATGAATGAAACATTTTCTACTTGGTGTGCATGATGGTCACAGGACAGCTTTAGTTTGGGGGGCGGGGGGTTTAAGGGAAGGGCTTTCCAAGAAGATGCTGGGGAAATGTAACATGCTAGATGGAGGGGTGAATAGATAGCGTCTTTCCCCTCTGGTTTCCATGTTTTACAGAGAAATGTTTCTCAGTAGATGTGGGCCAGGCAAGTGACTGCAGCTTCATTTGTAACCTAAAAAATGATCATGAATACATCAAATAAATATACAATCAAATAATG

Function

NR:

description
ribosomal protein S6 kinase alpha-3-like isoform X1

GO:

id name namespace
GO:0043588 skin development biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0048565 digestive tract development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591379.2 False 5096 mRNA 0.44 22 32346357 32368660
XM_021591378.2 True 5109 mRNA 0.44 22 32346357 32368661

Neighbor

gene id symbol gene type direction distance location
LOC110510069 LOC106563585 coding downstream 119 32343047 ~ 32346238 (-)
LOC110510067 NA coding downstream 4176 32318517 ~ 32342181 (-)
si:ch211-114c12.2 LOC106563582 coding downstream 49931 32287422 ~ 32296426 (-)
LOC110510065 LOC106603070 coding downstream 59094 32282188 ~ 32287263 (-)
poglut3 kdelc2 coding downstream 93646 32246223 ~ 32252711 (-)
LOC110510070 LOC106603064 coding upstream 265 32368926 ~ 32378207 (-)
LOC110510074 LOC106563592 coding upstream 54335 32422996 ~ 32425938 (-)
cpi1 cpi1 coding upstream 63549 32395346 ~ 32433641 (-)
LOC110510075 LOC106563635 coding upstream 82686 32451347 ~ 32460638 (-)
LOC110510076 LOC106563637 coding upstream 93021 32461682 ~ 32471105 (-)
G2175988 NA non-coding downstream 34705 32311436 ~ 32311652 (-)
G2175982 NA non-coding downstream 83809 32261785 ~ 32262548 (-)
G2175946 NA non-coding downstream 147698 32198242 ~ 32198659 (-)
G2175945 NA non-coding downstream 148664 32197202 ~ 32197693 (-)
G2176010 NA non-coding upstream 10574 32379235 ~ 32379452 (-)
G2175993 NA non-coding upstream 11731 32380392 ~ 32390112 (-)
G2175995 NA non-coding upstream 22213 32390874 ~ 32391955 (-)
G2175979 NA non-coding upstream 23531 32392192 ~ 32392688 (-)
G2175969 LOC100194703 other downstream 80268 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 608122 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 other downstream 617063 31726537 ~ 31731451 (-)
G2175503 NA other downstream 619963 31721952 ~ 31726394 (-)
G2176363 NA other upstream 274741 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1142635 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1752821 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1970250 34338911 ~ 34342460 (-)

Expression


Co-expression Network