LOC110510075 (LOC106563635)


Basic Information

Item Value
gene id LOC110510075
gene name LOC106563635
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32451347 ~ 32460638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591394.2
gacacagcaaaccttcctgccacagctcgcattaatgttccatcctggatgagctgcactacctgagccacttgtgtgggttgtagactcaaaacatcagccaggaagcataggaactgaaaaGTGGTCTGTGGTACGATCTGCAGAactactcctttattgggggtgtcttgctaattacctataatttccacctgttgtctatttatttgcacaacagcatgtgaaatttattgtcaatcagtgttgcttcctaagtggacagtttgatttcacagaagtgtgattgacttggagttacattgtgttgtttaagtgttccctttatacactgctcaaaaaaataaagggtttCTCTGACTAATAGGAAACGTTTTAACGTCTTACAAATATCTGTTTGATTTTGCTGTCTCTATCTTTTCCAAAATGATGTAAAGATTGGTAACTATGGTAGACTAAATAGCAATAGATTCATAGAAAGACATGAGTTAGAGAACATGTTTAAGAAACTGTAGACTACTTATTGACAGAATGCACCTGACCATAAGATTACTTCAAAGGGAGGAAAGATGTACAAGTTCTGCCAGACATGACACATGTCTGCCAGACATGACATCCTCTCACCCACGCACACTCTTTGTAGTTGAAGTGCTATTATTGTTAAGTTTTAATGTACATTACATTACTTCAACTATCCTTTTACTTGTATAAGACTAAGACTCATCTTCCTTTGTATCTTGTTTGTTTGTCAAGCCAATAAAGCATATCTTATCTATCGGCGAAGAGTGGGAGACAATGTGTATTAGTGGGGCATAAAAAAAACAGTCGACCAGGGCTGCTGTGTTCAAAGGAAGTGGCTAGAAGCTCAGTAGGCCTCATCTGTGTCATCACGGCAACAAACCTACATAATGAGAGTCTGTGTAGAACTGTCACTAGTTCGTTAGTAAGTGTACACGGTATTTTCAATATTTTAACTGTTTAAAATCCACCTCAACTTGAATTGCAAATGTGGCTACTGTTGAAGATAtgcacatgctctctctctcttactcactcgctcacacacaaacagactgatacacacacacacacactgattgtaTTTCCTGGTGTGCCTTCTGTTTCTTGTTGGACCCTTCTCACTCGCTGGCGTCTGTCATTTCCTGTCATTTCATAAAGCTCAGAGATATTCTCCATCCCCCCCAACATTGCTGTATTTCCCATCATGAGTGTCAGTACTAAAGAGTGTCTGCTTGTCCACTACTGGTCCTCAGCACCACTGGTCCTCCTGCTCCTCTGTTCTGGTTGTTTTGCAGACAGCAGGGTGAGAACTTCTGGTAACATCACAGCAAAGATTGGTCATCCTGTGACTCTGTCCTGTGAGCCGTCTGGAGACGGGAATGTGTCCCAGGTTGAGTGGAGGATTGGAGGGTGTGATGGCCGTAGGATTCTGGTTTCGAACACAAACAACCCAGTTGTCGTGGAGCAGGACTATATCGACCGTGTCTCTGCTGTGACGATGCGTGGATTCACATTACTAGGGACACAGAGGAATGACGCTGGGCCGTACTGCTGTTCTCTCACAACCTTCCCACTTGGGTCTTTGAAATGTCACCTTTTTTTGTATCTGACTGAGGACCCACAAACAGCCTTCAGTGAATCTCCTCACATAATAATTGTGTCCATTGCGAGTGGGATTCTGGGAATGCTGGTGCTGGGAGGGACCATAACAGCACTGTTGCTCTGTCAGAGGTGTAGAAGACCCGTGCAGGACCCTGTTCATGTGGCAGTTCATCCAGGGGGGCTTCCACAAAaacccccctccatcctccagAAAAGCCAGGCCCATGctcccccaccacagaggagtaacagtgaggaggaggaggagaacggggAAATGGATTACTTGAACGTTACAGTGCTTCACCTCCCCAGAATTCCACCTACTGCCTCCTCTGCCTTGAGGAAGAGCTAGAGAATACTGCACTCTCATACAAACAGAATAAAATACAAACAAAGACATGTATTCATAAAGACACAATATAatgtatacacacactcactgacacaaaAGCAGTTACATTCACACACATTACCTATATTTGGTTTGGGACCATTTCCAGTTTAGCATCTCCCCTACTCTGAAGTAAAGATTTAACGTTGGATTTGATCATTGTAAAAGCCATTGTAAAAGTCTTATTGTGCTGGCTCTGCATCCTAAATATCTTGTGTTTTGTAATAAAAAGGAATTCAATATCTCTCAAATGCACAGAATGGCCCTGCAGCATGATTTTAACAGTCACACTACACCATTAGAAAAAAATTGTTCTTTggctgtcaatcaatcaatcaaatgtacttataaagcc
>TU2487196
AGTACTAAAGAGTGTCTGCTTGTCCACTACTGGTCCTCAGCACCACTGGTCCTCCTGCTCCTCTGTTCTGGTTGTTTTGCAGACAGCAGGGTGAGAACTTCTGGTAACATCACAGCAAAGATTGGTCATCCTGTGACTCTGTCCTGTGAGCCGTCTGGAGACGGGAATGTGTCCCAGGTTGAGTGGAGGATTGGAGGGTGTGATGGCCGTAGGATTCTGGTTTCGAACACAAACAACCCAGTTGTCGTGGAGCAGGACTATATCGACCGTGTCTCTGCTGTGACGATGCGTGGATTCACATTACTAGGGACACAGAGGAATGACGCTGGGCCGTACTGCTGTTCTCTCACAACCTTCCCACTTGGGTCTTTGAAATGTCACCTTTTTTTGTATCTGACTGAGGACCCACAAACAGGTACTGCCCACCTTCACCAACTCCAAACCAGGCTAACATGTACCTCACATATTTCTCTTCTACGCCAAGTTGTTCTGCCATAGAAGTACCTAGTCACCAAGATGACACCCACAACAACCATGCGCGTGCTTCCTTTCTGAACTGTCACACTAACTTATACGTCAGCTATTGTAATAATCTGAACAAGGATGTAGAAAAGATAAGAAATGTCTAACTAGTTCCCTCCTGTTTTGTCAGCCTTCAGTGAATCTCCTCACATAATAATTGTGTCCATTGCGAGTGGGATTCTGGGAATGCTGGTGCTGGGAGGGACCATAACAGCACTGTTGCTCTGTCAGAGGTGTAGAAGACCCGTGCAGGACCCTGTTCATGTGGCAGTTCATCCAGGGGGGCTTCCACAAAaacccccctccatcctccagAAAAGCCAGGCCCATGctcccccaccacagaggagtaacagtgaggaggaggaggagaacggggAAATGGATTACTTGAACGTTACAGTGCTTCACCTCCCCAGAATTCCACCTACTGCCTCCTCTGCCTTGAGGAAGAGCTAGAGAATACTGCACTCTCATACAAACAGAATAAAATACAAACAAAGACATGTATTCATAAAGACACAATATAatgtatacacacactcactgacacaaaAGCAGTTACATTCACACACATTACCTATATTTGGTTTGGGACCATTTCCAGTTTAGCATCTCCCCTACTCTGAAGTAAAGATTTAACGTTGGATTTGATCATTGTAAAAGCCATTGTAAAAGT

Function

NR:

description
uncharacterized protein LOC109874428

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591394.2 False 2372 mRNA 0.43 4 32451347 32460638
TU2487196 True 1201 lncRNA 0.47 3 32451521 32459404

Neighbor

gene id symbol gene type direction distance location
cpi1 cpi1 coding downstream 17759 32395346 ~ 32433641 (-)
LOC110510074 LOC106563592 coding downstream 25409 32422996 ~ 32425938 (-)
LOC110510070 LOC106603064 coding downstream 73140 32368926 ~ 32378207 (-)
LOC110510068 LOC106563584 coding downstream 82686 32346357 ~ 32368661 (-)
LOC110510069 LOC106563585 coding downstream 105109 32343047 ~ 32346238 (-)
LOC110510076 LOC106563637 coding upstream 1044 32461682 ~ 32471105 (-)
LOC110510077 LOC106563593 coding upstream 20216 32480854 ~ 32486342 (-)
LOC110510084 LOC106563605 coding upstream 189788 32650426 ~ 32660465 (-)
zgc:175280 LOC106563607 coding upstream 201654 32662292 ~ 32669370 (-)
LOC110510092 cssa11h3orf30 coding upstream 257740 32718378 ~ 32727002 (-)
G2176045 NA non-coding downstream 4212 32446936 ~ 32447135 (-)
G2175979 NA non-coding downstream 58659 32392192 ~ 32392688 (-)
G2175995 NA non-coding downstream 59392 32390874 ~ 32391955 (-)
G2175993 NA non-coding downstream 61235 32380392 ~ 32390112 (-)
G2176141 NA non-coding upstream 37675 32498313 ~ 32499573 (-)
G2176142 NA non-coding upstream 39285 32499923 ~ 32500268 (-)
G2176146 LOC106578716 non-coding upstream 46927 32507565 ~ 32507888 (-)
G2176148 NA non-coding upstream 49504 32510142 ~ 32510831 (-)
G2176153 LOC106563597 non-coding upstream 52768 32513406 ~ 32533371 (-)
LOC110510065 LOC106603070 other downstream 165864 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 185258 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 713112 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 other downstream 722053 31726537 ~ 31731451 (-)
G2176363 NA other upstream 182764 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1050658 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1660844 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1878273 34338911 ~ 34342460 (-)
G2178372 NA other upstream 2342553 34792330 ~ 34809382 (-)

Expression


Co-expression Network