LOC110510077 (LOC106563593)


Basic Information

Item Value
gene id LOC110510077
gene name LOC106563593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32480854 ~ 32486342 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967817.1
CCAGAGCTCGTATTTTCTAATGTAATCTCGGGTCTCCGAGCCACAATGGTGATTGTTTCCCAAAGTAGTCTTGGGCCTGTCAGCTGATCAGTCTCCTAATCTGATAGAAATTTCTGAAGGGCCCTGGACTATTGAATACTAAGAGAAGGTAcagacacacacacacacacactcaggatgGACACTTCCAAGCTTCCTAAGATCCGTGATGAAGAGCGGGAAAGCGAGTTTGGATATGTGCATGGAGTTTCTGGTCCAGTGGTGACGGCCACCGCCATGGCAGGAGCGGCCATGTACGAGCTGGTGCGTGTGGGTCACAGTGAGCTGGTGGGAGAGATCATCAGGCTGGAGGGAGACATGGCAACCATTCAGGTCTACGAGGAGACCTCTGGTGTGTCTGTCGGAGACCCTGTCCTTCGGACAGGAAAGCCCCTGTCTGTAGAGTTGGGTCCGGGAATCATGGGGTCCATTTTTGATGGCATCCAGCGGCCCCTCAAAGACATCAATGACCTCACTCAAAGCATTTACATCCCTAGAGGAGTCAACATTGGAGCCCTCAACCGTGACCTCAAGTGGGAGTTTACACCTGGCCAGAGTCTTAGGACTGGCAGTCACATAACAGGTGGGGATATCTATGGCACGGTCTTTGAGAACTCGCTGATCAAACACAAGTTGATGCTGCCTCCCCGGAGCAGAGGCACTGTCACCTACGTGGCCCCACCTGGAAACTATGATGTCAATGATGTGGTGCTGGAACTGGAGTTTGAGGGTTTGAAAGAGAAGTTTACCATGATCCAGGTCTGGCCAGTGCGACAGATTCGCCCGGTCACAGAGAAGCTACCTGCCAATCACCCCCTGCTCACCGGCCAGAGAGTGTTGGATGCCCTCTTCCCGTGTGTCCAGGGTGGTACTACTGCTATCCCAGGAGCCTTCGGTTGTGGCAAGACTGTGATCTCACAGTCCCTGTCCAAGTATTCCAACAGTGATGTCATCATCTATGTGGGCTGTGGAGAGCGTGGAAATGAGATGTCTGAAGTGTTGAGAGATTTCCCTGAGCTTACAATGGAAGTGGATGGAAAGGTTGAAAGTATCATGAAGAGAACAGCTCTAGTGGCCAATACTTCCAACATGCCTGTCGCTGCTAGAGAGGCCTCTATTTACACAGGAATCACTCTGTCTGAGTACTTCAGAGACATGGGCTACAACGTCAGCATGATGGCCGACTCCACCTCCCGGTGGGCCGAGGCTCTCAGGGAGATCTCAGGACGATTGGCTGAGATGCCTGCTGACAGCGGGTACCCTGCCTACCTGGGAGCCAGACTGGCCTCCTTCTATGAGCGTGCTGGCAGGGTTAAGTGCCTGggtaacccagagagagagggcagcgtCAGCATTGTTGGAGCTGTGTCTCCCCCTGGTGGAGACTTCTCTGATCCTGTGACTTCGGCTACACTGGGTATTGTACAGgTGTTCTGGGGTCTAGATAAGAAGCTGGCTCAGAGAAAGCATTTCCCGTCAGTCAACTGGCTGATCAGCTACAGCAAGTACACACGGGCGCTGGACGAGTACTACGACAAGCACTTCCCTGAGTTTGTGCCGCTTCGCACCAAGGCCAAGGAGATCctgcaggaggaggaggatttgGCTGAGATTGTACAGCTTGTAGGCAAGGCATCTCTCGCTGAGACCGACAAAATCACATTGGAGGTTGCTAAACTACTCAAGGATGACTTCCTGCAGCAGAATGGCTATACTCCGTATGACAGGTTCTGCCCTTTCTACAAAACGGTGGGCATCCTTTCCAACACAATTGCGTTCTATGACTTGGCGCGACATGCAGTGGAGACCACGGCTCAGAGTGACAACAAGATCACCTGGTCCATGATCCGGGAGCACATGGGAGAGATCCTCTACAGACTCAGCTCTATGAAGTTCAAGGATCCAGTGAAGGAGGGCGAGGCCAAAATCAAAGCAGACTACTCTCAGCTGCTGGAGGACATGCAGAATGCCTTCCGTACCCTGGAGGACTGagctctcacctccctcccttcctacccCCAGTGCTCTCTGGCCCCTGTTTGTGAATGTCTACTTAGGCCAGTGACAGTCAAACCTCAGTCATTCCTCCACATTCCAACACGATGGTCGACCCATTTATTTCAACCATGCTCTTTTAATTTCACCATACTGTCATGTACAAGGCAGTAATGGAATCATTTTTTTCTCAGTTTTCTCAGAATTCATGTTTACCAAATCTATTACCATTAGCAATACCATCATCCGTGACCCCATCGTATggatgttctcctcctctcccttcagcCCCCTtgtcatccatgaagagcacacgaCTACAGCCCTGGTTACAGACAATAATCAGTGGACCCAGATCAGGTACTACACTTGTAATTAACTACTAGCTGAAACTTCATCTCCCAGGTGTGACTGACCACCACCAATAGATGGTTGACAAAAATGGGAACGTACACAGGGGTAAAGGGACAGAGGCACCTTGTTTATTTCAGGAGGTTGAGGCCCTCTTCCTCTCAATGCCTCTTAGATGGTATTTTGTGTTCTTACTTCTCTCTGTGGATATTTTGATGTTGTTTTTCTGTTGAGTGAAACagaaagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaatcagTTGCCTCCACCTTGAAGGCATATTTATGTCACATGTATTGTGTAAGTctaaagaaaataaatgaatgGGAAATAA
>XM_036967818.1
CCAGAGCTCGTATTTTCTAATGTAATCTCGGGTCTCCGAGCCACAATGGTGATTGTTTCCCAAAGTAGTCTTGGGCCTGTCAGCTGATCAGTCTCCTAATCTGATAGAAATTTCTGAAGGGCCCTGGACTATTGAATACTAAGAGAAGgcagacacacacacacacacactcaggatgGACACTTCCAAGCTTCCTAAGATCCGTGATGAAGAGCGGGAAAGCGAGTTTGGATATGTGCATGGAGTTTCTGGTCCAGTGGTGACGGCCACCGCCATGGCAGGAGCGGCCATGTACGAGCTGGTGCGTGTGGGTCACAGTGAGCTGGTGGGAGAGATCATCAGGCTGGAGGGAGACATGGCAACCATTCAGGTCTACGAGGAGACCTCTGGTGTGTCTGTCGGAGACCCTGTCCTTCGGACAGGAAAGCCCCTGTCTGTAGAGTTGGGTCCGGGAATCATGGGGTCCATTTTTGATGGCATCCAGCGGCCCCTCAAAGACATCAATGACCTCACTCAAAGCATTTACATCCCTAGAGGAGTCAACATTGGAGCCCTCAACCGTGACCTCAAGTGGGAGTTTACACCTGGCCAGAGTCTTAGGACTGGCAGTCACATAACAGGTGGGGATATCTATGGCACGGTCTTTGAGAACTCGCTGATCAAACACAAGTTGATGCTGCCTCCCCGGAGCAGAGGCACTGTCACCTACGTGGCCCCACCTGGAAACTATGATGTCAATGATGTGGTGCTGGAACTGGAGTTTGAGGGTTTGAAAGAGAAGTTTACCATGATCCAGGTCTGGCCAGTGCGACAGATTCGCCCGGTCACAGAGAAGCTACCTGCCAATCACCCCCTGCTCACCGGCCAGAGAGTGTTGGATGCCCTCTTCCCGTGTGTCCAGGGTGGTACTACTGCTATCCCAGGAGCCTTCGGTTGTGGCAAGACTGTGATCTCACAGTCCCTGTCCAAGTATTCCAACAGTGATGTCATCATCTATGTGGGCTGTGGAGAGCGTGGAAATGAGATGTCTGAAGTGTTGAGAGATTTCCCTGAGCTTACAATGGAAGTGGATGGAAAGGTTGAAAGTATCATGAAGAGAACAGCTCTAGTGGCCAATACTTCCAACATGCCTGTCGCTGCTAGAGAGGCCTCTATTTACACAGGAATCACTCTGTCTGAGTACTTCAGAGACATGGGCTACAACGTCAGCATGATGGCCGACTCCACCTCCCGGTGGGCCGAGGCTCTCAGGGAGATCTCAGGACGATTGGCTGAGATGCCTGCTGACAGCGGGTACCCTGCCTACCTGGGAGCCAGACTGGCCTCCTTCTATGAGCGTGCTGGCAGGGTTAAGTGCCTGggtaacccagagagagagggcagcgtCAGCATTGTTGGAGCTGTGTCTCCCCCTGGTGGAGACTTCTCTGATCCTGTGACTTCGGCTACACTGGGTATTGTACAGgTGTTCTGGGGTCTAGATAAGAAGCTGGCTCAGAGAAAGCATTTCCCGTCAGTCAACTGGCTGATCAGCTACAGCAAGTACACACGGGCGCTGGACGAGTACTACGACAAGCACTTCCCTGAGTTTGTGCCGCTTCGCACCAAGGCCAAGGAGATCctgcaggaggaggaggatttgGCTGAGATTGTACAGCTTGTAGGCAAGGCATCTCTCGCTGAGACCGACAAAATCACATTGGAGGTTGCTAAACTACTCAAGGATGACTTCCTGCAGCAGAATGGCTATACTCCGTATGACAGGTTCTGCCCTTTCTACAAAACGGTGGGCATCCTTTCCAACACAATTGCGTTCTATGACTTGGCGCGACATGCAGTGGAGACCACGGCTCAGAGTGACAACAAGATCACCTGGTCCATGATCCGGGAGCACATGGGAGAGATCCTCTACAGACTCAGCTCTATGAAGTTCAAGGATCCAGTGAAGGAGGGCGAGGCCAAAATCAAAGCAGACTACTCTCAGCTGCTGGAGGACATGCAGAATGCCTTCCGTACCCTGGAGGACTGagctctcacctccctcccttcctacccCCAGTGCTCTCTGGCCCCTGTTTGTGAATGTCTACTTAGGCCAGTGACAGTCAAACCTCAGTCATTCCTCCACATTCCAACACGATGGTCGACCCATTTATTTCAACCATGCTCTTTTAATTTCACCATACTGTCATGTACAAGGCAGTAATGGAATCATTTTTTTCTCAGTTTTCTCAGAATTCATGTTTACCAAATCTATTACCATTAGCAATACCATCATCCGTGACCCCATCGTATggatgttctcctcctctcccttcagcCCCCTtgtcatccatgaagagcacacgaCTACAGCCCTGGTTACAGACAATAATCAGTGGACCCAGATCAGGTACTACACTTGTAATTAACTACTAGCTGAAACTTCATCTCCCAGGTGTGACTGACCACCACCAATAGATGGTTGACAAAAATGGGAACGTACACAGGGGTAAAGGGACAGAGGCACCTTGTTTATTTCAGGAGGTTGAGGCCCTCTTCCTCTCAATGCCTCTTAGATGGTATTTTGTGTTCTTACTTCTCTCTGTGGATATTTTGATGTTGTTTTTCTGTTGAGTGAAACagaaagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaatcagTTGCCTCCACCTTGAAGGCATATTTATGTCACATGTATTGTGTAAGTctaaagaaaataaatgaatgGGAAATAA
>XM_036967819.1
TTGACTCCCAGAGCTCGTATTTTCTAATGTAATCTCGGGTCTCCGAGCCACAATGGTGATTGTTTCCCAAAGTAGTCTTGGGCCTGTCAGCTGATCAGTCTCCTAATCTGATAGAAATTTCTGAAGGGCCCTGGACTATTGAATACTAAGAGAAGacacacacacacacacactcaggatgGACACTTCCAAGCTTCCTAAGATCCGTGATGAAGAGCGGGAAAGCGAGTTTGGATATGTGCATGGAGTTTCTGGTCCAGTGGTGACGGCCACCGCCATGGCAGGAGCGGCCATGTACGAGCTGGTGCGTGTGGGTCACAGTGAGCTGGTGGGAGAGATCATCAGGCTGGAGGGAGACATGGCAACCATTCAGGTCTACGAGGAGACCTCTGGTGTGTCTGTCGGAGACCCTGTCCTTCGGACAGGAAAGCCCCTGTCTGTAGAGTTGGGTCCGGGAATCATGGGGTCCATTTTTGATGGCATCCAGCGGCCCCTCAAAGACATCAATGACCTCACTCAAAGCATTTACATCCCTAGAGGAGTCAACATTGGAGCCCTCAACCGTGACCTCAAGTGGGAGTTTACACCTGGCCAGAGTCTTAGGACTGGCAGTCACATAACAGGTGGGGATATCTATGGCACGGTCTTTGAGAACTCGCTGATCAAACACAAGTTGATGCTGCCTCCCCGGAGCAGAGGCACTGTCACCTACGTGGCCCCACCTGGAAACTATGATGTCAATGATGTGGTGCTGGAACTGGAGTTTGAGGGTTTGAAAGAGAAGTTTACCATGATCCAGGTCTGGCCAGTGCGACAGATTCGCCCGGTCACAGAGAAGCTACCTGCCAATCACCCCCTGCTCACCGGCCAGAGAGTGTTGGATGCCCTCTTCCCGTGTGTCCAGGGTGGTACTACTGCTATCCCAGGAGCCTTCGGTTGTGGCAAGACTGTGATCTCACAGTCCCTGTCCAAGTATTCCAACAGTGATGTCATCATCTATGTGGGCTGTGGAGAGCGTGGAAATGAGATGTCTGAAGTGTTGAGAGATTTCCCTGAGCTTACAATGGAAGTGGATGGAAAGGTTGAAAGTATCATGAAGAGAACAGCTCTAGTGGCCAATACTTCCAACATGCCTGTCGCTGCTAGAGAGGCCTCTATTTACACAGGAATCACTCTGTCTGAGTACTTCAGAGACATGGGCTACAACGTCAGCATGATGGCCGACTCCACCTCCCGGTGGGCCGAGGCTCTCAGGGAGATCTCAGGACGATTGGCTGAGATGCCTGCTGACAGCGGGTACCCTGCCTACCTGGGAGCCAGACTGGCCTCCTTCTATGAGCGTGCTGGCAGGGTTAAGTGCCTGggtaacccagagagagagggcagcgtCAGCATTGTTGGAGCTGTGTCTCCCCCTGGTGGAGACTTCTCTGATCCTGTGACTTCGGCTACACTGGGTATTGTACAGgTGTTCTGGGGTCTAGATAAGAAGCTGGCTCAGAGAAAGCATTTCCCGTCAGTCAACTGGCTGATCAGCTACAGCAAGTACACACGGGCGCTGGACGAGTACTACGACAAGCACTTCCCTGAGTTTGTGCCGCTTCGCACCAAGGCCAAGGAGATCctgcaggaggaggaggatttgGCTGAGATTGTACAGCTTGTAGGCAAGGCATCTCTCGCTGAGACCGACAAAATCACATTGGAGGTTGCTAAACTACTCAAGGATGACTTCCTGCAGCAGAATGGCTATACTCCGTATGACAGGTTCTGCCCTTTCTACAAAACGGTGGGCATCCTTTCCAACACAATTGCGTTCTATGACTTGGCGCGACATGCAGTGGAGACCACGGCTCAGAGTGACAACAAGATCACCTGGTCCATGATCCGGGAGCACATGGGAGAGATCCTCTACAGACTCAGCTCTATGAAGTTCAAGGATCCAGTGAAGGAGGGCGAGGCCAAAATCAAAGCAGACTACTCTCAGCTGCTGGAGGACATGCAGAATGCCTTCCGTACCCTGGAGGACTGagctctcacctccctcccttcctacccCCAGTGCTCTCTGGCCCCTGTTTGTGAATGTCTACTTAGGCCAGTGACAGTCAAACCTCAGTCATTCCTCCACATTCCAACACGATGGTCGACCCATTTATTTCAACCATGCTCTTTTAATTTCACCATACTGTCATGTACAAGGCAGTAATGGAATCATTTTTTTCTCAGTTTTCTCAGAATTCATGTTTACCAAATCTATTACCATTAGCAATACCATCATCCGTGACCCCATCGTATggatgttctcctcctctcccttcagcCCCCTtgtcatccatgaagagcacacgaCTACAGCCCTGGTTACAGACAATAATCAGTGGACCCAGATCAGGTACTACACTTGTAATTAACTACTAGCTGAAACTTCATCTCCCAGGTGTGACTGACCACCACCAATAGATGGTTGACAAAAATGGGAACGTACACAGGGGTAAAGGGACAGAGGCACCTTGTTTATTTCAGGAGGTTGAGGCCCTCTTCCTCTCAATGCCTCTTAGATGGTATTTTGTGTTCTTACTTCTCTCTGTGGATATTTTGATGTTGTTTTTCTGTTGAGTGAAACagaaagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagaatcagTTGCCTCCACCTTGAAGGCATATTTATGTCACATGTATTGTGTAAGTctaaagaaaataaatgaatgGGAAATAA

Function

NR:

description
PREDICTED: V-type proton ATPase catalytic subunit A-like

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967817.1 False 2754 mRNA 0.50 15 32480854 32486335
XM_036967818.1 False 2752 mRNA 0.50 15 32480854 32486335
XM_036967819.1 True 2755 mRNA 0.50 15 32480854 32486342

Neighbor

gene id symbol gene type direction distance location
LOC110510076 LOC106563637 coding downstream 9749 32461682 ~ 32471105 (-)
LOC110510075 LOC106563635 coding downstream 20216 32451347 ~ 32460638 (-)
cpi1 cpi1 coding downstream 47266 32395346 ~ 32433641 (-)
LOC110510074 LOC106563592 coding downstream 54916 32422996 ~ 32425938 (-)
LOC110510070 LOC106603064 coding downstream 102647 32368926 ~ 32378207 (-)
LOC110510084 LOC106563605 coding upstream 164084 32650426 ~ 32660465 (-)
zgc:175280 LOC106563607 coding upstream 175950 32662292 ~ 32669370 (-)
LOC110510092 cssa11h3orf30 coding upstream 232036 32718378 ~ 32727002 (-)
si:dkey-251i10.1 LOC106563614 coding upstream 311283 32797625 ~ 32799913 (-)
LOC110510097 LOC106563615 coding upstream 314238 32800580 ~ 32813597 (-)
G2176045 NA non-coding downstream 33719 32446936 ~ 32447135 (-)
G2175979 NA non-coding downstream 88166 32392192 ~ 32392688 (-)
G2175995 NA non-coding downstream 88899 32390874 ~ 32391955 (-)
G2176141 NA non-coding upstream 11971 32498313 ~ 32499573 (-)
G2176142 NA non-coding upstream 13581 32499923 ~ 32500268 (-)
G2176146 LOC106578716 non-coding upstream 21223 32507565 ~ 32507888 (-)
G2176148 NA non-coding upstream 23800 32510142 ~ 32510831 (-)
G2176153 LOC106563597 non-coding upstream 27064 32513406 ~ 32533371 (-)
LOC110510065 LOC106603070 other downstream 195371 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 214765 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 742619 31736713 ~ 31738259 (-)
LOC110510037 LOC106563414 other downstream 751560 31726537 ~ 31731451 (-)
G2176363 NA other upstream 157060 32643402 ~ 32644572 (-)
G2177695 NA other upstream 1024954 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1635140 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1852569 34338911 ~ 34342460 (-)
G2178372 NA other upstream 2316849 34792330 ~ 34809382 (-)

Expression


Co-expression Network