LOC118945341


Basic Information

Item Value
gene id LOC118945341
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 32905087 ~ 32916224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968186.1
CCTCTGTAGAGTACAATATATATAGAGACTCACTAGCTGGTCACCTCATTTGATATCTGGCTTCTGACTTAAATAAGGTGTCACCATGGAGAGAGGAATCCTCATCTGGTCTCTCTTGTTGTTCCTTGCCCTGAATATCGTCTACCCTAGTAGAACCCTCAACTCAATCCAAGATCTAAAGGACTTTCCTGTCCATCCCCTCTCCACATCTCAGCTCAGGTTGCTCTACTGGCTCGCCAGCCAAATCAACCACatagacaacaacaacatcatgaCATTCAATTTTGATCCAACCAGAGGAGACTATGGTTCTCATTATTATAAAAACATAGAAAGGGTGTTACCTCCACTTTTAAATAACATTGGAAACTACTACACCCTAGGAAATCTAAATATGAAAAACGCTCTGGATCTCCCAGAATATGTCACTAAAGAATTTCTCATTTCAACACATATTGCAGAGAAGTTAAAGAATAACAGACAGAGGCTCATCCTCCATGCCATATGGAATCATACAACGATGTTCATCACAGTGGATCAGGTCTACCTCACTCAGCACTATCCACCCAACTGGGGGAGAGGTTCTGAATACGACCCAGATAACACCTACCGCATCACCCCCAACCTCCTGAGAGAGATCCAGACGTTCCAGACCCTCTCAGCAACTGATATCCAAAACCAATACGGCATACAAATAGGCCCAACAAATCAAATAGAAGATCCCTTGCAGAGATTAGCATTGTTTTTCAAAATttttaagaatttgaaaacaTCTTATAGCAAATGCTATTCTAATACCAAGCAACGCCGTCGACGTTCAGAGAGTAAGGAAGAGTGTGATGATTTGAAGATGAAGCTGGAGGTAAAGACCACATGTAAAGGGACAGCTAGGATCAGCTGGGATGACATCCCTAAGAGGCACTTGAACCCGGATGTGTTTGTGGTGCTTTATCAGAACAAGGACAGTGAGATCCAGCTAGACTACACCAAGATAATCGAGGCCTCTGGGAACTTCAACACAAATGCAGCTCTAAATCACGGCCTGCAGGTCAGGCTTCACAAGAGCAAAACCAATTGGGGGACAAAAACTCCCGGGGAGATCTGGAGAGGTCTTGAGTTTCACGACACCAACAGGGAGATTCCTGTTGGCATAAGAGGTTATGACGCCAGTCTGCAGCTCTACGTTAAAGATGGCAAGGCCAGCGCTCGCCTGTACGTCAGGAACTCTTTCACTAACTGGATGGATGTGTTTAAGAGCTCCTGGGTTGGTTTCTACTCCAATGGAAACACAGGCACCTCTACGTGTTATACGTGGCAGTGGGCTGTGTATTTCTCCAAGGAAACCCGCTCGGACATACCAGAGTATGATGTGTATGTGTATCAGTCTAGTATGGCCATATCTCCTGGCGTCCATGCTAGATTCATACTCTGGAGAAAAGCTGGAGAAAAAGCCCGTACCTCAGACTGGGAAATACAGAGACCTGCCAATATAAATGTTAATATAAACGGTTACGACGCCAGTCTGCAACTATTTGTTAGAGAAGGCTATGCCTGCGCTCGCCTGTACATCAAGAAGTCCTTCTCTGACTGGAAGAGTAAGTTTTACTACTCCTGGGTTGGTTTCTACTCAGATGAAAATAAAGCCAACACGAAGTATGATAAAAATATGTGGCAATGGACCATTAAATTCTCCAAGGAAATTCCGTCTGACATACCAGACTATGATGCTTATGTATACCAGTCTTCTTTAGCCATGTCTCCTGGTGTCCAGGCTAGATTCATACTGGATCACAATGAAATGGCCCGTACTCTACCCTGGGAAATACAGAGACCTGCTGATAGTAAGTCTCCTGTTGATATAAACGGTTATGATGCCCTTCTGCAGCTCTTCGTTAAAGACAACAAGGCCAGTGCTCGCCTGTACATCAAGAAGTCCTTCTCTGACTGGAAGAGTAAGTTTTACAACTCCTGGGTTGGTTTCTACTCAGATGAAAATAAAGCCAACACGAAGTATGATGCAAATATGTGGCAATGGACCATTAAATTCTCCAAGGAAATTCCGTCTGACATACCAGACTATGATGCTTATGTATACCAGTTTGGTAGGACAATGTCTCCTGGTGTCCAGGCCAGATTCCTACTGTCTGACAATATTGAAAAGGCCCGTACTCTACCTTGGAAGAATTAGGGCTTGATTCAATCTGTATAGCTGAAGTTCAGCGCTAATGCGCAATATATATTCAAAGGTAATTTGCGATTGAGCACCACATATGCAGCATCTACCGTGAATGCCATCTCCGCgaacaataagaataacaataatgaggctatatacagggggctccagtaccaagtcagtgtgcaggggtacaggctagttgctttaaaatgttgtttttttgcgcaTTAGCGCTTACTTCAGTGATACATGATTGAATAGAATttacagtgcatccggaaagtattcagaccccttgactttttcaacattttgttacgttacattcttattctaaattggattcaatcgttttt

Function

NR:

description
PREDICTED: uncharacterized protein LOC105031026

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968186.1 True 2535 mRNA 0.43 2 32905087 32916224

Neighbor

gene id symbol gene type direction distance location
si:ch211-107p11.3 LOC106563619 coding downstream 60776 32842113 ~ 32844311 (-)
LOC110510097 LOC106563615 coding downstream 91490 32800580 ~ 32813597 (-)
si:dkey-251i10.1 LOC106563614 coding downstream 105174 32797625 ~ 32799913 (-)
LOC110510092 cssa11h3orf30 coding downstream 178085 32718378 ~ 32727002 (-)
zgc:175280 LOC106563607 coding downstream 235717 32662292 ~ 32669370 (-)
LOC118945287 NA coding upstream 38635 32954859 ~ 32957801 (-)
kif20a LOC106563621 coding upstream 95014 33011238 ~ 33019372 (-)
trnaa-agc-231 NA coding upstream 103967 33020191 ~ 33020263 (-)
LOC110510107 djc18 coding upstream 124721 33040945 ~ 33058157 (-)
ecscr LOC106563624 coding upstream 146227 33062451 ~ 33066498 (-)
G2176470 NA non-coding downstream 44421 32860101 ~ 32860666 (-)
G2176465 NA non-coding downstream 54109 32850745 ~ 32850978 (-)
G2176464 NA non-coding downstream 54871 32850001 ~ 32850216 (-)
G2176443 NA non-coding downstream 78038 32826641 ~ 32827049 (-)
G2176442 NA non-coding downstream 79093 32825232 ~ 32825994 (-)
G2176506 NA non-coding upstream 15163 32931387 ~ 32932091 (-)
G2176515 NA non-coding upstream 30523 32946747 ~ 32947173 (-)
G2176544 NA non-coding upstream 70749 32986973 ~ 32987250 (-)
G2176549 NA non-coding upstream 74197 32990421 ~ 32990708 (-)
G2176550 NA non-coding upstream 74526 32990750 ~ 32990971 (-)
G2176363 NA other downstream 260515 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 471446 32395346 ~ 32433641 (-)
LOC110510065 LOC106603070 other downstream 619604 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 638998 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 1166852 31736713 ~ 31738259 (-)
G2177695 NA other upstream 595072 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1205258 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1422687 34338911 ~ 34342460 (-)
G2178372 NA other upstream 1886967 34792330 ~ 34809382 (-)
G2179862 NA other upstream 3045760 35961984 ~ 35962832 (-)

Expression


Co-expression Network