ecscr (LOC106563624)


Basic Information

Item Value
gene id ecscr
gene name LOC106563624
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 33062451 ~ 33066498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591445.2
TAGAGGGCAAGTAGCTACTAACCACCACTCTATGCAACACAACGGCAACATCTCGCTTCCAGGACCTTAACCatactctctcattaacacaggcaaatacacacagacacacacccaggcCACAAGTTGAGACAGCTGCCACACACGGACACACTCAGAGAGACTCCATACTCTCTCTAGTACGTTCATGACAGTGGGTTCTCTTGCCCTGAGTGACCCCACACATTTTACACATTCAATAATACATACACACAGTGGGAATTTGCAAAGCTCCAGACAGAGGAAACGCTGTGGATTTGGACATGGATCTGCTTCTGTATCCTATCCCTCTGCTGAGTGTGTTTCTCCTCATTCCAGCAGTTTCAGCCCAATCTGCCATCAATCTGACCAACCAGACAGATGTTCCCATGGTGACCTCACCCACAACACTGTCATCCAACACTATGCATGTGGCTGGCAACGCAACAACCCCAACTACAGCCCATCCAATGACTGATGTGACATCATCCCCAGCACTCTCACCGCCAGgGAACAACCCTCTTGTGACAACCCTCAGTGCCCTGCAGTCAAATCAATCAACAGCCTCACCTGGAAATGCCAGCAGTGACAATGAGGCACCCACATCCTCACCTCGACTATCGTGTCCTAACGTCAGAAGCTCTGCTCAGGCTAAAATACCTAGTACCCCCTCACAAGACACTGCTGCTGGACCAGTCTTCGGATCAACGGCTGCTGCAACAGCAACCACTTCGACCTCTGTGACTTCCCCTGAGGGACCCaaagggacacacacagacatccctCCCACTCAGTCACCGGGCAAGAGCCTCACCATGCTTGCCTTTGGTGTCATGACTTTAATCCTCATTCTCATCATTATCATGGTGGTTTTAGTAACAGTGGTCAACCTAAAAGACAAGTGCAGCAACTCCAAGGAGGAAGGTAAAAAGAGCAGTGATTCTGTGGTGTCTGAAAGCAATGTCACGTTTAGTGGAGAAAAAGAGAGCATCACTTTGATCTCCATGAAGACCATTAACACAGAAACTGACACAGAGTCCCCCCAGGTCTCCTCCATTCACAGTACAACACTGGACTATGAGGAGCAGGAGCAAAACAGGGACCTATTGAACAACAAGCTGGTGTGAAAATAAAGACCCTAGATGTTCCGTTCCAAAACACAGAAATCACCAAACTACTCAAACAAAATAGTACAGTGGTTGTTCTATACACCTGAGATCAAGTTACCGGGAGTCCACACAGCACCTGAATTCATAGCTGTGGAGATATTATACATTAAGCTACAACTAGGCCTACCGTTGTGTCTGATGTGTCTACATGTTGCCATTCTAATACAAATATCACATGTATTTGTGTGATGATATCAAAACTGCCTTTATGGAGAcaatgttgtgtgttctgtttcatatatatatatatatatatatattatttatttatttatttcacctttatttaacc

Function

NR:

description
endothelial cell-specific chemotaxis regulator

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591445.2 True 1479 mRNA 0.46 11 33062451 33066498

Neighbor

gene id symbol gene type direction distance location
LOC110510107 djc18 coding downstream 4294 33040945 ~ 33058157 (-)
trnaa-agc-231 NA coding downstream 42188 33020191 ~ 33020263 (-)
kif20a LOC106563621 coding downstream 43079 33011238 ~ 33019372 (-)
LOC118945287 NA coding downstream 104650 32954859 ~ 32957801 (-)
LOC118945341 NA coding downstream 146227 32905087 ~ 32916224 (-)
ppp3ca UBE2D2 coding upstream 407 33066905 ~ 33205175 (-)
zgc:100829 LOC106563646 coding upstream 260212 33326710 ~ 33390385 (-)
puraa LOC107684715 coding upstream 360121 33426619 ~ 33434693 (-)
LOC110509437 NA coding upstream 549020 33615518 ~ 33617217 (-)
slc22a6l s22a6 coding upstream 553545 33620043 ~ 33627271 (-)
G2176615 NA non-coding downstream 23 33058769 ~ 33062428 (-)
G2176596 NA non-coding downstream 23301 33038944 ~ 33039150 (-)
G2176552 NA non-coding downstream 68583 32993625 ~ 32993868 (-)
G2176550 NA non-coding downstream 71480 32990750 ~ 32990971 (-)
G2176707 NA non-coding upstream 60049 33126547 ~ 33129922 (-)
G2176709 NA non-coding upstream 63561 33130059 ~ 33133784 (-)
G2176712 NA non-coding upstream 97996 33164494 ~ 33165906 (-)
G2176729 NA non-coding upstream 125873 33192371 ~ 33192615 (-)
G2176730 NA non-coding upstream 126280 33192778 ~ 33193110 (-)
G2176363 NA other downstream 417879 32643402 ~ 32644572 (-)
cpi1 cpi1 other downstream 628810 32395346 ~ 32433641 (-)
LOC110510065 LOC106603070 other downstream 776968 32282188 ~ 32287263 (-)
G2175969 LOC100194703 other downstream 796362 32263283 ~ 32266089 (-)
LOC110509376 LOC107567170 other downstream 1324216 31736713 ~ 31738259 (-)
G2177695 NA other upstream 444798 33511296 ~ 33512326 (-)
G2177991 cfb other upstream 1054984 34092047 ~ 34216247 (-)
LOC110510135 LOC106563696 other upstream 1272413 34338911 ~ 34342460 (-)
G2178372 NA other upstream 1736693 34792330 ~ 34809382 (-)
G2179862 NA other upstream 2895486 35961984 ~ 35962832 (-)

Expression


Co-expression Network